Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 2.3e-88 328.9 173 100.0
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 1.4e-69 266.5 173 80.9
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.1e-63 246.9 173 76.3
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 1.1e-63 246.9 173 76.3
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.5e-63 246.5 173 76.3
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 1.6e-33 146.7 174 51.1
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 3.0e-32 142.5 166 48.8
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 6.7e-32 141.4 174 47.7
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 8.8e-32 141.0 173 48.0
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 1.1e-31 140.6 173 48.6
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 2.0e-31 139.8 174 48.9
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 2.6e-31 139.4 174 47.7
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 4.4e-31 138.7 174 48.3
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 4.8e-30 135.2 176 50.6
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 1.1e-29 134.0 173 46.2
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 3.1e-29 132.5 175 48.0
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 4.1e-29 132.1 172 47.7
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 7.0e-29 131.3 174 45.4
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 9.1e-29 131.0 177 48.6
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 1.2e-28 130.6 173 46.2
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 1.2e-28 130.6 174 46.6
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 3.5e-28 129.0 173 45.7
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 4.5e-28 128.6 173 45.1
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 5.9e-28 128.3 177 47.5
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 1.7e-27 126.7 171 45.6
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 1.7e-27 126.7 177 46.9
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 1.7e-27 126.7 173 43.4
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 1.7e-27 126.7 170 45.9
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 1.7e-27 126.7 176 47.7
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 2.2e-27 126.3 173 42.8
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 2.9e-27 125.9 173 43.9
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.9e-27 125.9 174 46.0
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 3.8e-27 125.6 174 46.0
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 5.0e-27 125.2 173 43.9
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 6.5e-27 124.8 177 47.5
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 6.5e-27 124.8 173 43.4
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 6.5e-27 124.8 174 43.1
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 8.5e-27 124.4 175 42.3
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 1.1e-26 124.0 173 43.4
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 1.1e-26 124.0 173 42.2
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 1.1e-26 124.0 174 43.7
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 1.1e-26 124.0 175 43.4
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 1.1e-26 124.0 173 42.2
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 1.5e-26 123.6 174 45.4
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 1.9e-26 123.2 179 41.9
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 2.5e-26 122.9 174 43.7
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 4.2e-26 122.1 165 48.5
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 5.5e-26 121.7 173 42.2
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 5.5e-26 121.7 173 42.2
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 7.2e-26 121.3 175 44.0
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 7.2e-26 121.3 175 42.9
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 1.2e-25 120.6 175 44.6
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 2.1e-25 119.8 173 41.0
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 2.1e-25 119.8 173 42.8
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 8.0e-25 117.9 174 42.0
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 1.8e-24 116.7 176 44.9
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 5.2e-24 115.2 177 40.1
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 6.7e-24 114.8 181 39.2
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 6.7e-24 114.8 175 41.1
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 2.6e-23 112.8 175 40.6
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 3.3e-23 112.5 176 39.2
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 5.7e-23 111.7 174 39.7
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 1.3e-22 110.5 174 41.4
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 1.3e-22 110.5 165 40.0
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 2.2e-22 109.8 184 41.3
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 2.8e-22 109.4 181 37.6
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 4.8e-22 108.6 180 38.9
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 4.8e-22 108.6 172 39.5
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 6.3e-22 108.2 182 38.5
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 8.2e-22 107.8 203 36.5
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 8.2e-22 107.8 182 38.5
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 8.2e-22 107.8 165 39.4
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 1.8e-21 106.7 172 38.4
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 1.8e-21 106.7 176 39.2
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 1.8e-21 106.7 172 38.4
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 1.8e-21 106.7 172 38.4
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 1.8e-21 106.7 176 39.2
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 3.1e-21 105.9 176 39.2
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 3.1e-21 105.9 169 40.8
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 4.1e-21 105.5 175 41.7
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 5.3e-21 105.1 181 37.0
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 5.3e-21 105.1 179 38.5
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 9.1e-21 104.4 116 51.7
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 9.1e-21 104.4 181 37.6
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 1.2e-20 104.0 181 37.6
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 2.0e-20 103.2 115 53.0
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 3.5e-20 102.4 181 35.9
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.3e-19 100.5 148 45.3
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 1.7e-19 100.1 182 37.9
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 8.5e-19 97.8 174 42.0
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 1.1e-18 97.4 113 49.6
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.9e-18 96.7 111 50.5
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 1.2e-17 94.0 136 39.7
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.2e-17 94.0 131 43.5
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 8.0e-17 91.3 181 38.1
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 1.4e-16 90.5 108 45.4
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 8.8e-16 87.8 106 49.1
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 4.8e-14 82.0 176 29.0
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 9.1e-13 77.8 173 31.8
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 4.5e-12 75.5 111 44.1
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 1.0e-11 74.3 116 37.1
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 5.0e-11 72.0 116 34.5
Duzib213G1086 Durio zibethinus HOM05D006478 ORTHO05D008071 9.4e-10 67.8 124 41.9
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 2.1e-09 66.6 146 32.2
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 1.0e-08 64.3 67 55.2
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 1.8e-08 63.5 138 31.2
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 2.3e-08 63.2 166 30.7
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 3.0e-08 62.8 79 48.1
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 9.8e-07 57.8 174 28.2
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 2.8e-06 56.2 144 34.7


User provided reference genes

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