Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G180800 Theobroma cacao HOM05D004798 ORTHO05D005809 3.6e-100 368.2 183 100.0
Thecc.06G226700 Theobroma cacao HOM05D004798 ORTHO05D005809 1.7e-78 296.2 182 81.9
Duzib205G0692 Durio zibethinus HOM05D004798 ORTHO05D005809 4.4e-66 255.0 183 69.4
Gohir.A07G022225 Gossypium hirsutum HOM05D004798 ORTHO05D005809 3.2e-64 248.8 183 68.9
Gohir.D07G024300 Gossypium hirsutum HOM05D004798 ORTHO05D005809 4.1e-64 248.4 183 68.3
Gorai.001G025500 Gossypium raimondii HOM05D004798 ORTHO05D005809 4.1e-64 248.4 183 68.3
Gorai.002G042200 Gossypium raimondii HOM05D004798 ORTHO05D005809 3.5e-63 245.4 182 67.6
Gohir.D01G034100 Gossypium hirsutum HOM05D004798 ORTHO05D005809 7.8e-63 244.2 184 67.9
Gorai.002G041600 Gossypium raimondii HOM05D004798 ORTHO05D005809 1.5e-61 240.0 183 66.7
Gorai.002G041700 Gossypium raimondii HOM05D004798 ORTHO05D005809 2.6e-50 202.6 185 60.0
Cfa019269 Carpinus fangiana HOM05D004798 ORTHO05D005809 4.6e-47 191.8 152 58.6
COL.COLO4_32241 Corchorus olitorius HOM05D004798 ORTHO05D005809 6.6e-46 188.0 182 53.8
Manes.14G010600 Manihot esculenta HOM05D004798 ORTHO05D005809 8.7e-46 187.6 151 57.6
COL.COLO4_32250 Corchorus olitorius HOM05D004798 ORTHO05D005809 3.6e-44 182.2 182 53.8
QL04p063277 Quercus lobata HOM05D004798 ORTHO05D005809 3.6e-44 182.2 152 56.6
Cpa.g.sc36.174 Carica papaya HOM05D004798 ORTHO05D005809 1.3e-41 173.7 214 43.9
CiPaw.11G062500 Carya illinoinensis HOM05D004798 ORTHO05D005809 3.8e-41 172.2 182 50.5
Prupe.4G134600 Prunus persica HOM05D004798 ORTHO05D005809 1.9e-40 169.9 182 48.4
Rhsim06G0242400 Rhododendron simsii HOM05D004798 ORTHO05D005809 4.2e-40 168.7 161 52.2
Ciclev10007175m.g Citrus clementina HOM05D004798 ORTHO05D005809 7.1e-40 167.9 185 49.2
Actinidia07389 Actinidia chinensis HOM05D004798 ORTHO05D005809 4.6e-39 165.2 162 50.6
CSS0004676 Camellia sinensis var. sinensis HOM05D004798 ORTHO05D005809 7.8e-39 164.5 130 60.0
RcHm_v2.0_Chr5g0024801 Rosa chinensis HOM05D004798 ORTHO05D005809 1.3e-38 163.7 150 51.3
Sabra07G0056500 Salix brachista HOM05D004798 ORTHO05D005809 3.9e-38 162.2 163 47.9
CANSAT80G0679 Cannabis sativa HOM05D004798 ORTHO05D005809 5.1e-38 161.8 153 51.0
Potri.007G069100 Populus trichocarpa HOM05D004798 ORTHO05D005809 5.1e-38 161.8 163 47.9
PGR142G0128 Punica granatum HOM05D004798 ORTHO05D005809 5.1e-38 161.8 157 51.0
Rhsim05G0210400 Rhododendron simsii HOM05D004798 ORTHO05D005809 5.1e-38 161.8 161 50.3
Migut.D00034 Erythranthe guttata HOM05D004798 ORTHO05D005809 8.7e-38 161.0 151 52.3
CiPaw.11G062300 Carya illinoinensis HOM05D004798 ORTHO05D005809 1.1e-37 160.6 152 52.0
FAN21G4068 Fragaria x ananassa HOM05D004798 ORTHO05D005809 1.9e-37 159.8 150 50.7
TWI59G1404 Tripterygium wilfordii HOM05D004798 ORTHO05D005809 1.9e-37 159.8 154 50.6
Sopen02g017090 Solanum pennellii HOM05D004798 ORTHO05D005809 7.3e-37 157.9 145 49.7
FAN16G3266 Fragaria x ananassa HOM05D004798 ORTHO05D005809 9.6e-37 157.5 150 49.3
Solyc02g067960.3 Solanum lycopersicum HOM05D004798 ORTHO05D005809 9.6e-37 157.5 145 49.7
CAN.G1057.22 Capsicum annuum HOM05D004798 ORTHO05D005809 1.6e-36 156.8 182 43.4
Sc09g0007570 Simmondsia chinensis HOM05D004798 ORTHO05D005809 1.6e-36 156.8 140 52.1
FvH4_3g15040 Fragaria vesca HOM05D004798 ORTHO05D005809 2.8e-36 156.0 150 48.7
MD10G1208400 Malus domestica HOM05D004798 ORTHO05D005809 2.8e-36 156.0 150 50.0
Dinv42483 Davidia involucrata HOM05D004798 ORTHO05D005809 3.6e-36 155.6 136 52.2
FAN11G3190 Fragaria x ananassa HOM05D004798 ORTHO05D005809 3.6e-36 155.6 150 48.7
GSVIVG01036787001 Vitis vinifera HOM05D004798 ORTHO05D005809 3.6e-36 155.6 138 53.6
TWI23G0839 Tripterygium wilfordii HOM05D004798 ORTHO05D005809 4.8e-36 155.2 154 48.1
arahy.Tifrunner.gnm1.ann1.1JZ67N Arachis hypogaea HOM05D004798 ORTHO05D005809 1.1e-35 154.1 151 50.3
Nitab4.5_0001804g0010 Nicotiana tabacum HOM05D004798 ORTHO05D005809 1.5e-34 150.2 186 41.9
Nitab4.5_0003318g0110 Nicotiana tabacum HOM05D000048 ORTHO05D005809 1.5e-34 150.2 182 42.3
MSTRG.21720 Avicennia marina HOM05D004798 ORTHO05D005809 2.0e-34 149.8 161 45.3
MD10G1208300 Malus domestica HOM05D004798 ORTHO05D005809 9.9e-34 147.5 151 49.0
Peaxi162Scf00535g00737 Petunia axillaris HOM05D004798 ORTHO05D005809 1.7e-33 146.7 179 40.2
Lalb_Chr07g0194461 Lupinus albus HOM05D004798 ORTHO05D005809 2.2e-33 146.4 151 48.3
THA.LOC104813610 Tarenaya hassleriana HOM05D004798 ORTHO05D005809 2.9e-33 146.0 211 40.8
Haze_07644 Corylus avellana HOM05D004798 ORTHO05D005809 1.1e-32 144.1 121 57.9
Cfa000971 Carpinus fangiana HOM05D004798 ORTHO05D005809 2.4e-32 142.9 151 50.3
SGA_v2.0_scaffold80G25698 Striga asiatica HOM05D004798 ORTHO05D005809 2.4e-32 142.9 129 49.6
vmacro11698 Vaccinium macrocarpon HOM05D004798 ORTHO05D005809 7.1e-32 141.4 130 53.1
Cc06_g09150 Coffea canephora HOM05D004798 ORTHO05D005809 2.7e-31 139.4 187 42.2
Eucgr.B03144 Eucalyptus grandis HOM05D004798 ORTHO05D005809 3.5e-31 139.0 130 46.9
Sed0007670 Sechium edule HOM05D004798 ORTHO05D005809 4.6e-31 138.7 182 41.8
Lsat_1_v5_gn_4_10120 Lactuca sativa HOM05D004798 ORTHO05D005809 6.0e-31 138.3 182 37.4
EL10Ac5g10930 Beta vulgaris HOM05D004798 ORTHO05D005809 1.0e-30 137.5 177 42.9
BraA07t31942Z Brassica rapa HOM05D004798 ORTHO05D005809 1.0e-30 137.5 177 40.1
BcaB02g08675 Brassica carinata HOM05D004798 ORTHO05D005809 1.8e-30 136.7 185 37.8
Cfa000972 Carpinus fangiana HOM05D004798 ORTHO05D005809 3.9e-30 135.6 151 47.0
SalBow6G1027 Salvia bowleyana HOM05D004798 ORTHO05D005809 3.9e-30 135.6 153 44.4
AL2G39690 Arabidopsis lyrata HOM05D004798 ORTHO05D005809 5.1e-30 135.2 170 38.8
ECA234G4198 Erigeron canadensis HOM05D007647 ORTHO05D009644 5.1e-30 135.2 171 39.8
Sp5g34270 Schrenkiella parvula HOM05D004798 ORTHO05D005809 6.7e-30 134.8 125 49.6
Prupe.4G134700 Prunus persica HOM05D004798 ORTHO05D005809 8.7e-30 134.4 182 40.1
Phvul.010G025900 Phaseolus vulgaris HOM05D004798 ORTHO05D005809 1.1e-29 134.0 152 45.4
BcaC08g47487 Brassica carinata HOM05D004798 ORTHO05D005809 3.3e-29 132.5 172 38.4
C06p53110 Brassica napus HOM05D004798 ORTHO05D005809 3.3e-29 132.5 172 38.4
BolC6t40328H Brassica oleracea HOM05D004798 ORTHO05D005809 3.3e-29 132.5 172 38.4
RcHm_v2.0_Chr5g0024811 Rosa chinensis HOM05D004798 ORTHO05D005809 3.3e-29 132.5 182 42.3
A07p44340 Brassica napus HOM05D004798 ORTHO05D005809 5.6e-29 131.7 177 37.3
FvH4_3g15050 Fragaria vesca HOM05D004798 ORTHO05D005809 5.6e-29 131.7 149 44.3
Carub.0002s2609 Capsella rubella HOM05D004798 ORTHO05D005809 2.8e-28 129.4 124 46.0
HanXRQChr05g0152291 Helianthus annuus HOM05D004798 ORTHO05D005809 2.8e-28 129.4 130 43.8
TAR624G0684 Trochodendron aralioides HOM05D004798 ORTHO05D005809 2.8e-28 129.4 169 41.4
Glyma.16G085500 Glycine max HOM05D004798 ORTHO05D005809 4.8e-28 128.6 163 43.6
Aqoxy3G00727_Aqoxy3G00728 Aquilegia oxysepala HOM05D004798 ORTHO05D005809 6.2e-28 128.3 132 48.5
Psat4g205840 Pisum sativum HOM05D004798 ORTHO05D005809 6.2e-28 128.3 154 47.4
TPR.G16444 Trifolium pratense HOM05D004798 ORTHO05D005809 6.2e-28 128.3 151 45.0
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 8.1e-28 127.9 125 46.4
Thhalv10019771m.g Eutrema salsugineum HOM05D004798 ORTHO05D005809 8.1e-28 127.9 172 38.4
Medtr8g012210 Medicago truncatula HOM05D004798 ORTHO05D005809 8.1e-28 127.9 154 43.5
Ca_23201_v3 Cicer arietinum L. HOM05D004798 ORTHO05D005809 2.4e-27 126.3 155 45.2
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 2.4e-27 126.3 129 46.5
AT1G79220 Arabidopsis thaliana HOM05D004798 ORTHO05D005809 4.0e-27 125.6 203 36.5
CSS0022520 Camellia sinensis var. sinensis HOM05D004798 ORTHO05D005809 9.9e-26 120.9 92 63.0
Oeu044747.1 Olea europaea HOM05D004798 ORTHO05D005809 2.9e-25 119.4 107 53.3
DCAR_013726 Daucus carota HOM05D004798 ORTHO05D005809 3.8e-25 119.0 149 43.6
Lj3g0011819 Lotus japonicus HOM05D004798 ORTHO05D005809 3.8e-25 119.0 154 44.2
AUR62020832 Chenopodium quinoa HOM05D004798 ORTHO05D005809 8.4e-25 117.9 133 42.1
Nitab4.5_0000049g0040 Nicotiana tabacum HOM05D004798 ORTHO05D005809 1.6e-23 113.6 140 39.3
FAN25G3737 Fragaria x ananassa HOM05D004798 ORTHO05D005809 2.7e-23 112.8 182 35.7
AUR62018586 Chenopodium quinoa HOM05D004798 ORTHO05D005809 4.6e-23 112.1 133 40.6
Lj2C15T15 Lonicera japonica HOM05D004798 ORTHO05D005809 1.8e-22 110.2 130 41.5
Peaxi162Scf00292g00042 Petunia axillaris HOM05D004798 ORTHO05D005809 1.8e-22 110.2 99 50.5
Haze_05550 Corylus avellana HOM05D004798 ORTHO05D005809 5.1e-22 108.6 150 42.7
Nitab4.5_0001189g0020 Nicotiana tabacum HOM05D004798 ORTHO05D005809 1.9e-21 106.7 126 42.9
ATR0796G246 Amborella trichopoda HOM05D004798 ORTHO05D005809 9.6e-21 104.4 125 39.2
Nn7g35901 Nelumbo nucifera HOM05D004798 ORTHO05D005809 1.6e-20 103.6 171 36.8
Nitab4.5_0001189g0010 Nicotiana tabacum HOM05D004798 ORTHO05D005809 2.9e-17 92.8 75 54.7
Nitab4.5_0000049g0020 Nicotiana tabacum HOM05D004798 ORTHO05D005809 1.0e-14 84.3 91 44.0
unitig_85.g27191 Utricularia gibba HOM05D004798 ORTHO05D005809 5.1e-14 82.0 94 38.3
CDE02G3781 Ceratophyllum demersum HOM05D004798 ORTHO05D005809 7.2e-08 61.6 91 30.8
SEGI_15647 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 7.2e-08 61.6 121 25.6
Peaxi162Scf00154g00132 Petunia axillaris HOM05D000161 ORTHO05D000111 1.6e-07 60.5 135 26.7
Peaxi162Scf00154g00133 Petunia axillaris HOM05D000161 ORTHO05D000111 1.6e-07 60.5 140 25.7
CsaV3_3G014500 Cucumis sativus L. HOM05D000161 ORTHO05D000111 6.1e-07 58.5 138 25.4
CsaV3_3G014520 Cucumis sativus L. HOM05D000161 ORTHO05D000111 6.1e-07 58.5 138 25.4
PSO447G0054 Papaver somniferum HOM05D000161 ORTHO05D000111 7.9e-07 58.2 115 31.3
PSO210G1994 Papaver somniferum HOM05D000161 ORTHO05D000111 1.0e-06 57.8 115 31.3
Nitab4.5_0004233g0070 Nicotiana tabacum HOM05D000161 ORTHO05D000111 1.8e-06 57.0 147 26.5
Nitab4.5_0004323g0050 Nicotiana tabacum HOM05D000161 ORTHO05D000111 3.9e-06 55.8 147 25.2
Nitab4.5_0001378g0060 Nicotiana tabacum HOM05D000161 ORTHO05D000111 5.1e-06 55.5 134 25.4
HanXRQChr05g0133521 Helianthus annuus HOM05D000161 ORTHO05D000111 6.7e-06 55.1 132 25.8
Dinv44717 Davidia involucrata HOM05D000161 ORTHO05D000111 8.8e-06 54.7 128 26.6


User provided reference genes

Program Settings