Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G174200 Theobroma cacao HOM05D011997 ORTHO05D015628 7.2e-47 190.7 129 100.0
Thecc.07G174400 Theobroma cacao HOM05D011997 ORTHO05D015628 7.2e-47 190.7 129 100.0
Thecc.07G174600 Theobroma cacao HOM05D011997 ORTHO05D015628 7.2e-47 190.7 129 100.0
Thecc.07G173900 Theobroma cacao HOM05D011997 ORTHO05D015628 3.8e-24 115.2 106 85.8
Thecc.07G174000 Theobroma cacao HOM05D011997 ORTHO05D015628 9.5e-23 110.5 107 85.0
Duzib138G0371 Durio zibethinus HOM05D011192 ORTHO05D015638 5.2e-13 78.2 56 64.3
Gohir.D13G128300 Gossypium hirsutum HOM05D011997 ORTHO05D015628 9.8e-12 73.9 53 67.9
Gohir.D13G128350 Gossypium hirsutum HOM05D011997 ORTHO05D015628 9.8e-12 73.9 53 67.9
Gorai.013G144200 Gossypium raimondii HOM05D011997 ORTHO05D015628 9.8e-12 73.9 53 67.9
Gohir.A13G124800 Gossypium hirsutum HOM05D011997 ORTHO05D015628 2.2e-11 72.8 52 67.3
Gorai.013G144000 Gossypium raimondii HOM05D011997 ORTHO05D015628 8.3e-11 70.9 53 66.0
Gohir.D13G128266 Gossypium hirsutum HOM05D011997 ORTHO05D015628 1.4e-10 70.1 55 58.2
Thecc.02G266200 Theobroma cacao HOM05D011192 ORTHO05D015638 1.4e-10 70.1 58 55.2
Gorai.001G236600 Gossypium raimondii HOM05D011192 ORTHO05D015638 4.1e-10 68.6 58 53.4
COL.COLO4_03334 Corchorus olitorius HOM05D006944 ORTHO05D015628 1.2e-09 67.0 49 67.3
Duzib211G0488 Durio zibethinus HOM05D006944 ORTHO05D009910 3.5e-09 65.5 51 58.8
Gohir.D07G209600 Gossypium hirsutum HOM05D011192 ORTHO05D015638 3.5e-09 65.5 58 51.7
Gohir.A07G203400 Gossypium hirsutum HOM05D011192 ORTHO05D015638 6.0e-09 64.7 56 53.6
COL.COLO4_32294 Corchorus olitorius HOM05D006944 ORTHO05D009910 7.8e-09 64.3 59 52.5
Gohir.A07G203500 Gossypium hirsutum HOM05D011192 ORTHO05D015638 7.8e-09 64.3 55 56.4
COL.COLO4_32293 Corchorus olitorius HOM05D011997 ORTHO05D163488 1.0e-08 63.9 38 78.9
Gorai.001G236900 Gossypium raimondii HOM05D011192 ORTHO05D047871 1.0e-08 63.9 55 54.5
Thecc.07G172800 Theobroma cacao HOM05D006944 ORTHO05D009910 1.0e-08 63.9 56 53.6
Thecc.K0001700 Theobroma cacao HOM05D006944 ORTHO05D009910 1.0e-08 63.9 56 53.6
Gohir.A07G203600 Gossypium hirsutum HOM05D011192 ORTHO05D015638 1.3e-08 63.5 58 50.0
Duzib213G0044 Durio zibethinus HOM05D006944 ORTHO05D009910 3.9e-08 62.0 59 44.1
Gorai.004G269200 Gossypium raimondii HOM05D006944 ORTHO05D009910 3.9e-08 62.0 60 53.3
Thecc.05G191200 Theobroma cacao HOM05D006944 ORTHO05D035094 3.9e-08 62.0 57 52.6
Gohir.D08G252466 Gossypium hirsutum HOM05D006944 ORTHO05D009910 5.0e-08 61.6 58 53.4
Thecc.05G191800 Theobroma cacao HOM05D006944 ORTHO05D407174 5.0e-08 61.6 57 49.1
COL.COLO4_32287 Corchorus olitorius HOM05D006944 ORTHO05D009910 6.6e-08 61.2 56 51.8
Gorai.001G236700 Gossypium raimondii HOM05D011192 ORTHO05D015638 6.6e-08 61.2 55 54.5
Gohir.D07G209633 Gossypium hirsutum HOM05D011192 ORTHO05D015638 1.1e-07 60.5 55 54.5
Gorai.001G236800 Gossypium raimondii HOM05D011192 ORTHO05D015638 1.1e-07 60.5 55 54.5
Gorai.005G105000 Gossypium raimondii HOM05D011192 ORTHO05D048127 1.5e-07 60.1 55 54.5
Thecc.07G173400 Theobroma cacao HOM05D006944 ORTHO05D009910 1.5e-07 60.1 57 47.4
Gohir.A07G203550 Gossypium hirsutum HOM05D011192 ORTHO05D015638 1.9e-07 59.7 54 51.9
Thecc.05G142700 Theobroma cacao HOM05D006944 ORTHO05D009910 1.9e-07 59.7 57 50.9
Gohir.D13G128401 Gossypium hirsutum HOM05D006944 ORTHO05D048132 2.5e-07 59.3 60 45.0
TWI63G1346 Tripterygium wilfordii HOM05D029604 ORTHO05D030703 3.3e-07 58.9 57 49.1
Duzib213G0468 Durio zibethinus HOM05D006944 ORTHO05D009910 5.6e-07 58.2 57 45.6
Thecc.07G175800 Theobroma cacao HOM05D006944 ORTHO05D009910 5.6e-07 58.2 56 50.0
Gohir.A08G232050 Gossypium hirsutum HOM05D006944 ORTHO05D009910 7.3e-07 57.8 58 51.7
Gohir.A08G232100 Gossypium hirsutum HOM05D006944 ORTHO05D009910 7.3e-07 57.8 58 51.7
Gorai.013G144300 Gossypium raimondii HOM05D006944 ORTHO05D048132 7.3e-07 57.8 60 45.0
Duzib128G1252 Durio zibethinus HOM05D006944 ORTHO05D186093 9.5e-07 57.4 58 48.3
Sabra01G0055400 Salix brachista HOM05D006944 ORTHO05D009910 9.5e-07 57.4 59 49.2
Gohir.A01G097800 Gossypium hirsutum HOM05D006944 ORTHO05D036286 1.2e-06 57.0 59 49.2
Thecc.05G142800 Theobroma cacao HOM05D006944 ORTHO05D035085 1.2e-06 57.0 59 47.5
TWI63G0079 Tripterygium wilfordii HOM05D029604 ORTHO05D030703 1.2e-06 57.0 57 47.4
Gorai.013G143800 Gossypium raimondii HOM05D011997 ORTHO05D047178 1.6e-06 56.6 45 55.6
COL.COLO4_32286 Corchorus olitorius HOM05D006944 ORTHO05D009910 2.1e-06 56.2 57 47.4
Thecc.07G175700 Theobroma cacao HOM05D006944 ORTHO05D009910 2.1e-06 56.2 56 50.0
Duzib032G0001 Durio zibethinus HOM05D006944 ORTHO05D035094 2.8e-06 55.8 59 50.8
Duzib128G1158 Durio zibethinus HOM05D006944 ORTHO05D035094 2.8e-06 55.8 59 50.8
Duzib128G1583 Durio zibethinus HOM05D006944 ORTHO05D009910 2.8e-06 55.8 56 48.2
Duzib268G0833 Durio zibethinus HOM05D006944 ORTHO05D009910 2.8e-06 55.8 56 50.0
Sabra03G0111300 Salix brachista HOM05D006944 ORTHO05D009910 2.8e-06 55.8 55 47.3
COL.COLO4_03335 Corchorus olitorius HOM05D006944 ORTHO05D009910 4.7e-06 55.1 52 48.1
Gohir.A13G124700 Gossypium hirsutum HOM05D011997 ORTHO05D047178 4.7e-06 55.1 44 56.8
Gohir.A13G124825 Gossypium hirsutum HOM05D006944 ORTHO05D009910 4.7e-06 55.1 58 41.4
Gohir.D01G082300 Gossypium hirsutum HOM05D006944 ORTHO05D036286 4.7e-06 55.1 59 47.5
Potri.003G101900 Populus trichocarpa HOM05D006944 ORTHO05D009910 4.7e-06 55.1 57 45.6
Potri.003G102000 Populus trichocarpa HOM05D006944 ORTHO05D009910 4.7e-06 55.1 57 45.6
Thecc.07G164100 Theobroma cacao HOM05D006944 ORTHO05D045182 4.7e-06 55.1 48 54.2
Gohir.A08G232200 Gossypium hirsutum HOM05D006944 ORTHO05D009910 6.2e-06 54.7 60 48.3
Thecc.05G191600 Theobroma cacao HOM05D006944 ORTHO05D009910 6.2e-06 54.7 57 49.1
COL.COLO4_32292 Corchorus olitorius HOM05D006944 ORTHO05D009910 8.1e-06 54.3 52 50.0
Duzib187G0900 Durio zibethinus HOM05D006944 ORTHO05D009910 8.1e-06 54.3 55 49.1
Duzib213G0640 Durio zibethinus HOM05D006944 ORTHO05D009910 8.1e-06 54.3 57 47.4
Duzib213G0882 Durio zibethinus HOM05D006944 ORTHO05D009910 8.1e-06 54.3 57 43.9
Duzib213G0885 Durio zibethinus HOM05D006944 ORTHO05D186234 8.1e-06 54.3 58 46.6
Duzib268G0495 Durio zibethinus HOM05D006944 ORTHO05D009910 8.1e-06 54.3 57 45.6
Gohir.A13G124500 Gossypium hirsutum HOM05D006944 ORTHO05D009910 8.1e-06 54.3 57 45.6
Sabra03G0111100 Salix brachista HOM05D006944 ORTHO05D009910 8.1e-06 54.3 56 44.6


User provided reference genes

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