Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G174000 Theobroma cacao HOM05D011997 ORTHO05D015628 1.3e-28 129.8 107 100.0
Thecc.07G173900 Theobroma cacao HOM05D011997 ORTHO05D015628 7.1e-24 114.0 106 88.7
Thecc.07G174200 Theobroma cacao HOM05D011997 ORTHO05D015628 2.3e-22 109.0 107 85.0
Thecc.07G174400 Theobroma cacao HOM05D011997 ORTHO05D015628 2.3e-22 109.0 107 85.0
Thecc.07G174600 Theobroma cacao HOM05D011997 ORTHO05D015628 2.3e-22 109.0 107 85.0
Duzib138G0371 Durio zibethinus HOM05D011192 ORTHO05D015638 1.5e-13 79.7 55 61.8
COL.COLO4_03334 Corchorus olitorius HOM05D006944 ORTHO05D015628 6.2e-12 74.3 51 68.6
Gohir.D13G128266 Gossypium hirsutum HOM05D011997 ORTHO05D015628 1.5e-10 69.7 56 55.4
Gohir.D13G128300 Gossypium hirsutum HOM05D011997 ORTHO05D015628 2.0e-10 69.3 53 62.3
Gohir.D13G128350 Gossypium hirsutum HOM05D011997 ORTHO05D015628 2.0e-10 69.3 53 62.3
Gorai.013G144200 Gossypium raimondii HOM05D011997 ORTHO05D015628 2.0e-10 69.3 53 62.3
Gohir.A13G124800 Gossypium hirsutum HOM05D011997 ORTHO05D015628 5.8e-10 67.8 52 61.5
Thecc.02G266200 Theobroma cacao HOM05D011192 ORTHO05D015638 7.6e-10 67.4 57 52.6
Gorai.001G236600 Gossypium raimondii HOM05D011192 ORTHO05D015638 1.0e-09 67.0 57 49.1
Gorai.013G144000 Gossypium raimondii HOM05D011997 ORTHO05D015628 1.7e-09 66.2 53 60.4
Duzib211G0488 Durio zibethinus HOM05D006944 ORTHO05D009910 2.9e-09 65.5 53 54.7
COL.COLO4_32294 Corchorus olitorius HOM05D006944 ORTHO05D009910 6.5e-09 64.3 57 50.9
Gohir.A07G203400 Gossypium hirsutum HOM05D011192 ORTHO05D015638 8.4e-09 63.9 57 47.4
Gohir.D07G209600 Gossypium hirsutum HOM05D011192 ORTHO05D015638 8.4e-09 63.9 57 47.4
Thecc.07G172800 Theobroma cacao HOM05D006944 ORTHO05D009910 8.4e-09 63.9 57 50.9
Gohir.A07G203600 Gossypium hirsutum HOM05D011192 ORTHO05D015638 1.1e-08 63.5 57 47.4
Gorai.004G269200 Gossypium raimondii HOM05D006944 ORTHO05D009910 1.1e-08 63.5 54 55.6
Gohir.A07G203500 Gossypium hirsutum HOM05D011192 ORTHO05D015638 1.9e-08 62.8 57 49.1
Thecc.05G191200 Theobroma cacao HOM05D006944 ORTHO05D035094 2.5e-08 62.4 57 49.1
Thecc.05G191800 Theobroma cacao HOM05D006944 ORTHO05D407174 2.5e-08 62.4 57 47.4
Gohir.D08G252466 Gossypium hirsutum HOM05D006944 ORTHO05D009910 3.2e-08 62.0 52 55.8
Gorai.001G236900 Gossypium raimondii HOM05D011192 ORTHO05D047871 3.2e-08 62.0 54 50.0
Thecc.K0001700 Theobroma cacao HOM05D006944 ORTHO05D009910 7.1e-08 60.8 57 47.4
Gohir.A07G203550 Gossypium hirsutum HOM05D011192 ORTHO05D015638 1.2e-07 60.1 57 45.6
Duzib213G0044 Durio zibethinus HOM05D006944 ORTHO05D009910 1.6e-07 59.7 57 42.1
Gohir.A08G232050 Gossypium hirsutum HOM05D006944 ORTHO05D009910 1.6e-07 59.7 54 51.9
Gohir.A08G232100 Gossypium hirsutum HOM05D006944 ORTHO05D009910 1.6e-07 59.7 54 51.9
Gorai.001G236700 Gossypium raimondii HOM05D011192 ORTHO05D015638 1.6e-07 59.7 57 47.4
Thecc.07G173400 Theobroma cacao HOM05D006944 ORTHO05D009910 1.6e-07 59.7 57 43.9
TWI63G1346 Tripterygium wilfordii HOM05D029604 ORTHO05D030703 2.1e-07 59.3 53 50.9
Gohir.D07G209633 Gossypium hirsutum HOM05D011192 ORTHO05D015638 2.7e-07 58.9 57 47.4
Gorai.001G236800 Gossypium raimondii HOM05D011192 ORTHO05D015638 2.7e-07 58.9 57 47.4
COL.COLO4_32287 Corchorus olitorius HOM05D006944 ORTHO05D009910 4.6e-07 58.2 55 49.1
Thecc.05G142700 Theobroma cacao HOM05D006944 ORTHO05D009910 4.6e-07 58.2 57 49.1
Gohir.D13G128401 Gossypium hirsutum HOM05D006944 ORTHO05D048132 6.0e-07 57.8 59 44.1
Duzib128G1583 Durio zibethinus HOM05D006944 ORTHO05D009910 7.9e-07 57.4 57 47.4
Duzib213G0468 Durio zibethinus HOM05D006944 ORTHO05D009910 7.9e-07 57.4 55 43.6
Gorai.005G105000 Gossypium raimondii HOM05D011192 ORTHO05D048127 7.9e-07 57.4 57 47.4
TWI63G0079 Tripterygium wilfordii HOM05D029604 ORTHO05D030703 7.9e-07 57.4 53 49.1
Duzib032G0001 Durio zibethinus HOM05D006944 ORTHO05D035094 1.0e-06 57.0 57 45.6
Duzib128G1158 Durio zibethinus HOM05D006944 ORTHO05D035094 1.0e-06 57.0 57 45.6
Thecc.05G142800 Theobroma cacao HOM05D006944 ORTHO05D035085 1.0e-06 57.0 57 45.6
COL.COLO4_32293 Corchorus olitorius HOM05D011997 ORTHO05D163488 1.3e-06 56.6 38 71.1
Gorai.013G143800 Gossypium raimondii HOM05D011997 ORTHO05D047178 1.3e-06 56.6 45 55.6
Sabra03G0111300 Salix brachista HOM05D006944 ORTHO05D009910 1.3e-06 56.6 57 43.9
Gorai.013G144300 Gossypium raimondii HOM05D006944 ORTHO05D048132 1.8e-06 56.2 54 46.3
COL.COLO4_03335 Corchorus olitorius HOM05D006944 ORTHO05D009910 2.3e-06 55.8 54 44.4
Gohir.A08G232200 Gossypium hirsutum HOM05D006944 ORTHO05D009910 2.3e-06 55.8 54 50.0
Thecc.07G175800 Theobroma cacao HOM05D006944 ORTHO05D009910 2.3e-06 55.8 57 45.6
Duzib128G1252 Durio zibethinus HOM05D006944 ORTHO05D186093 3.0e-06 55.5 57 45.6
COL.COLO4_32292 Corchorus olitorius HOM05D006944 ORTHO05D009910 3.9e-06 55.1 54 46.3
Gohir.A13G124700 Gossypium hirsutum HOM05D011997 ORTHO05D047178 3.9e-06 55.1 44 56.8
Thecc.02G007500 Theobroma cacao HOM05D006944 ORTHO05D013071 3.9e-06 55.1 57 40.4
Thecc.07G174800 Theobroma cacao HOM05D006944 ORTHO05D009910 3.9e-06 55.1 54 46.3
Thecc.05G191600 Theobroma cacao HOM05D006944 ORTHO05D009910 5.1e-06 54.7 57 47.4
Thecc.07G164100 Theobroma cacao HOM05D006944 ORTHO05D045182 5.1e-06 54.7 50 50.0
Potri.003G152900 Populus trichocarpa HOM05D006944 ORTHO05D009910 6.7e-06 54.3 51 47.1
Thecc.07G173000 Theobroma cacao HOM05D006944 ORTHO05D009910 8.7e-06 53.9 46 56.5


User provided reference genes

Program Settings