Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G170100 Theobroma cacao HOM05D002099 ORTHO05D002080 1.9e-56 222.2 110 100.0
Thecc.05G199100 Theobroma cacao HOM05D002099 ORTHO05D002080 3.8e-12 75.1 49 79.6
Glyma.09G250400 Glycine max HOM05D002099 ORTHO05D002080 1.4e-11 73.2 60 63.3
VMungo1383G2001 Vigna mungo HOM05D002099 ORTHO05D002080 2.4e-11 72.4 60 63.3
Glyma.18G242100 Glycine max HOM05D002099 ORTHO05D002080 9.3e-11 70.5 60 61.7
GSVIVG01019108001 Vitis vinifera HOM05D002099 ORTHO05D002080 9.3e-11 70.5 49 71.4
CSS0048982 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 1.2e-10 70.1 44 77.3
COL.COLO4_19824 Corchorus olitorius HOM05D002099 ORTHO05D002080 1.2e-10 70.1 48 75.0
Sabra13G0077900 Salix brachista HOM05D002099 ORTHO05D002080 1.2e-10 70.1 48 68.8
Lalb_Chr03g0038621 Lupinus albus HOM05D002099 ORTHO05D002080 1.6e-10 69.7 60 65.0
Ciclev10013740m.g Citrus clementina HOM05D002099 ORTHO05D002080 4.6e-10 68.2 48 70.8
Haze_02117 Corylus avellana HOM05D002099 ORTHO05D002080 4.6e-10 68.2 49 67.3
Phvul.008G054075 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 6.0e-10 67.8 60 58.3
Prupe.6G361500 Prunus persica HOM05D002099 ORTHO05D002080 6.0e-10 67.8 60 60.0
Lj3A637T23 Lonicera japonica HOM05D002099 ORTHO05D002080 7.8e-10 67.4 49 63.3
Psat3g138200 Pisum sativum HOM05D002099 ORTHO05D002080 7.8e-10 67.4 49 67.3
RcHm_v2.0_Chr3g0447871 Rosa chinensis HOM05D002099 ORTHO05D002080 7.8e-10 67.4 48 64.6
Sed0005400 Sechium edule HOM05D002099 ORTHO05D002080 1.0e-09 67.0 49 63.3
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.3e-09 66.6 48 66.7
vmacro19652 Vaccinium macrocarpon HOM05D002099 ORTHO05D002080 1.3e-09 66.6 44 72.7
Ca_07988_v3 Cicer arietinum L. HOM05D002099 ORTHO05D002080 1.7e-09 66.2 49 65.3
Gohir.A05G391800 Gossypium hirsutum HOM05D002099 ORTHO05D002080 1.7e-09 66.2 49 69.4
MBI11_g19463_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 1.7e-09 66.2 49 63.3
MBI11_g39359_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 1.7e-09 66.2 49 63.3
Potri.013G085850 Populus trichocarpa HOM05D002099 ORTHO05D002080 1.7e-09 66.2 48 68.8
TAR362G0096 Trochodendron aralioides HOM05D002099 ORTHO05D002080 1.7e-09 66.2 49 61.2
Medtr7g080030 Medicago truncatula HOM05D002099 ORTHO05D002080 2.3e-09 65.9 49 65.3
arahy.Tifrunner.gnm1.ann1.U4C2R0 Arachis hypogaea HOM05D002099 ORTHO05D002080 3.0e-09 65.5 48 62.5
FAN02G0985 Fragaria x ananassa HOM05D002099 ORTHO05D002080 3.0e-09 65.5 48 62.5
Gohir.D04G025500 Gossypium hirsutum HOM05D002099 ORTHO05D002080 3.0e-09 65.5 49 69.4
Gorai.012G028100 Gossypium raimondii HOM05D002099 ORTHO05D002080 3.0e-09 65.5 49 69.4
MD04G1244900 Malus domestica HOM05D002099 ORTHO05D002080 3.0e-09 65.5 60 58.3
Actinidia06808 Actinidia chinensis HOM05D002099 ORTHO05D002080 3.9e-09 65.1 49 61.2
FvH4_6g00490 Fragaria vesca HOM05D002099 ORTHO05D002080 3.9e-09 65.1 48 62.5
FAN09G2981 Fragaria x ananassa HOM05D002099 ORTHO05D002080 3.9e-09 65.1 48 62.5
FAN14G4226 Fragaria x ananassa HOM05D002099 ORTHO05D002080 3.9e-09 65.1 48 62.5
Lj1g0024785 Lotus japonicus HOM05D002099 ORTHO05D002080 3.9e-09 65.1 66 57.6
FAN05G4152 Fragaria x ananassa HOM05D002099 ORTHO05D002080 5.1e-09 64.7 48 62.5
Aa31LG11G13200 Aethionema arabicum HOM05D002099 ORTHO05D002080 6.6e-09 64.3 64 50.0
Manes.12G005700 Manihot esculenta HOM05D002099 ORTHO05D002080 6.6e-09 64.3 49 63.3
arahy.Tifrunner.gnm1.ann1.05THYH Arachis hypogaea HOM05D002099 ORTHO05D002080 8.7e-09 63.9 44 65.9
Cpa.g.sc39.11 Carica papaya HOM05D002099 ORTHO05D002080 8.7e-09 63.9 49 61.2
MELO3C010056.2 Cucumis melo HOM05D002099 ORTHO05D002080 8.7e-09 63.9 49 63.3
CsaV3_1G044520 Cucumis sativus L. HOM05D000081 ORTHO05D000036 1.1e-08 63.5 66 53.0
Eucgr.H01389 Eucalyptus grandis HOM05D002099 ORTHO05D002080 1.1e-08 63.5 49 61.2
C02p08360 Brassica napus HOM05D002099 ORTHO05D002080 1.5e-08 63.2 49 59.2
BolC2t06753H Brassica oleracea HOM05D002099 ORTHO05D002080 1.5e-08 63.2 49 59.2
Atru.chr12.2088 Acer truncatum HOM05D002099 ORTHO05D002080 1.9e-08 62.8 48 64.6
Oeu046894.1 Olea europaea HOM05D002099 ORTHO05D002080 1.9e-08 62.8 44 63.6
CANSAT54G1934 Cannabis sativa HOM05D002099 ORTHO05D002080 2.5e-08 62.4 60 56.7
Dinv29097 Davidia involucrata HOM05D002099 ORTHO05D002080 2.5e-08 62.4 49 63.3
PSO017G0082 Papaver somniferum HOM05D002099 ORTHO05D002080 2.5e-08 62.4 49 55.1
PSO675G9338 Papaver somniferum HOM05D002099 ORTHO05D002080 2.5e-08 62.4 49 55.1
TPR.G31800 Trifolium pratense HOM05D002099 ORTHO05D002080 3.3e-08 62.0 49 61.2
SalBow1G1769 Salvia bowleyana HOM05D002099 ORTHO05D002080 4.3e-08 61.6 49 57.1
SGA_v2.0_scaffold62G21503 Striga asiatica HOM05D002099 ORTHO05D002080 4.3e-08 61.6 49 55.1
DCAR_031610 Daucus carota HOM05D002099 ORTHO05D002080 5.6e-08 61.2 48 64.6
A02p03540 Brassica napus HOM05D002099 ORTHO05D002080 7.3e-08 60.8 49 57.1
BraA02t05325Z Brassica rapa HOM05D002099 ORTHO05D002080 7.3e-08 60.8 49 57.1
CAN.G1191.11 Capsicum annuum HOM05D002099 ORTHO05D002080 7.3e-08 60.8 47 59.6
CAN.G1191.12 Capsicum annuum HOM05D002099 ORTHO05D002080 7.3e-08 60.8 47 59.6
Thhalv10015351m.g Eutrema salsugineum HOM05D002099 ORTHO05D002080 7.3e-08 60.8 49 59.2
Sp6g27720 Schrenkiella parvula HOM05D002099 ORTHO05D002080 7.3e-08 60.8 49 57.1
TWI36G0914 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 9.6e-08 60.5 45 66.7
AL6G27400 Arabidopsis lyrata HOM05D002099 ORTHO05D002080 1.3e-07 60.1 49 57.1
AT5G16460 Arabidopsis thaliana HOM05D002099 ORTHO05D002080 1.3e-07 60.1 49 57.1
Carub.0006s1466 Capsella rubella HOM05D002099 ORTHO05D002080 1.3e-07 60.1 49 57.1
CAN.G217.9 Capsicum annuum HOM05D002099 ORTHO05D002080 1.3e-07 60.1 52 50.0
CARHR196790 Cardamine hirsuta HOM05D002099 ORTHO05D002080 1.3e-07 60.1 49 57.1
ClCG03G010670 Citrullus lanatus HOM05D002099 ORTHO05D002080 1.3e-07 60.1 44 63.6
Migut.F02134 Erythranthe guttata HOM05D002099 ORTHO05D002080 1.3e-07 60.1 44 63.6
BcaB01g04981 Brassica carinata HOM05D002099 ORTHO05D002080 2.1e-07 59.3 44 61.4
C03p09010 Brassica napus HOM05D002099 ORTHO05D002080 2.1e-07 59.3 44 61.4
BolC3t13397H Brassica oleracea HOM05D002099 ORTHO05D002080 2.1e-07 59.3 44 61.4
A03p07790 Brassica napus HOM05D002099 ORTHO05D002080 2.8e-07 58.9 44 61.4
BraA03t10106Z Brassica rapa HOM05D002099 ORTHO05D002080 2.8e-07 58.9 44 61.4
PGR031G1225 Punica granatum HOM05D002099 ORTHO05D002080 2.8e-07 58.9 49 55.1
THA.LOC104827173 Tarenaya hassleriana HOM05D002099 ORTHO05D002080 2.8e-07 58.9 49 57.1
Ah.06g195480 Amaranthus hybridus HOM05D002099 ORTHO05D002080 3.6e-07 58.5 48 56.2
Cc09_g03650 Coffea canephora HOM05D002099 ORTHO05D002080 6.2e-07 57.8 44 54.5
DCAR_002121 Daucus carota HOM05D002099 ORTHO05D002080 6.2e-07 57.8 44 61.4
BcaC03g18491 Brassica carinata HOM05D002099 ORTHO05D002080 8.1e-07 57.4 47 57.4
CDE04G0871 Ceratophyllum demersum HOM05D002099 ORTHO05D002080 8.1e-07 57.4 44 61.4
HanXRQChr05g0141781 Helianthus annuus HOM05D002099 ORTHO05D002080 1.1e-06 57.0 49 55.1
Aqoxy2G02749 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 1.4e-06 56.6 56 51.8
Nitab4.5_0001435g0060 Nicotiana tabacum HOM05D002099 ORTHO05D002080 1.4e-06 56.6 66 43.9
EL10Ac4g09964 Beta vulgaris HOM05D002099 ORTHO05D002080 2.4e-06 55.8 48 54.2
AUR62006654 Chenopodium quinoa HOM05D002099 ORTHO05D002080 4.0e-06 55.1 48 47.9
Nitab4.5_0000083g0130 Nicotiana tabacum HOM05D002099 ORTHO05D002080 6.9e-06 54.3 44 52.3
PGSC0003DMG400007260 Solanum tuberosum HOM05D002099 ORTHO05D002080 6.9e-06 54.3 44 56.8
AUR62000310 Chenopodium quinoa HOM05D002099 ORTHO05D002080 9.0e-06 53.9 44 47.7
Solyc04g056380.3 Solanum lycopersicum HOM05D002099 ORTHO05D002080 9.0e-06 53.9 44 56.8
Sopen04g025290 Solanum pennellii HOM05D002099 ORTHO05D002080 9.0e-06 53.9 44 56.8


User provided reference genes

Program Settings