Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1571.6 835 100.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1377.8 836 87.8
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 0.0e+00 1307.0 832 84.3
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 0.0e+00 1300.4 837 84.6
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 0.0e+00 1296.2 828 83.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 0.0e+00 1294.3 831 83.4
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 0.0e+00 1119.4 845 73.4
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 0.0e+00 1109.4 831 72.1
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 0.0e+00 1098.6 838 72.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1096.3 845 71.4
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1095.1 832 71.2
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1093.6 832 71.4
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 0.0e+00 1092.8 834 71.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 0.0e+00 1092.0 842 71.3
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 0.0e+00 1089.7 826 71.7
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 0.0e+00 1084.3 838 71.2
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 5.7e-312 1073.9 831 71.0
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.3e-311 1072.0 838 70.2
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 5.3e-308 1060.8 837 69.5
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 7.6e-307 1057.0 835 68.7
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 2.9e-306 1055.0 843 69.9
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.8e-303 1045.8 839 68.4
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 4.3e-302 1041.2 835 68.7
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.4e-302 1040.4 830 68.8
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.1e-300 1036.6 844 68.4
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 9.0e-300 1033.5 844 68.7
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.3e-298 1029.6 844 67.7
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.5e-297 1025.4 827 68.6
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.2e-297 1025.0 829 67.2
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 9.3e-297 1023.5 829 67.1
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 2.1e-296 1022.3 835 66.7
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 2.7e-296 1021.9 835 66.3
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 6.7e-295 1017.3 829 67.8
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.7e-294 1014.2 840 67.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.6e-293 1012.7 838 66.2
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 3.7e-293 1011.5 826 67.1
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 3.7e-293 1011.5 845 65.2
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 3.1e-292 1008.4 841 65.4
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 4.1e-292 1008.1 839 67.9
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 9.0e-292 1006.9 833 66.1
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.2e-290 1002.3 824 66.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.2e-290 1002.3 838 65.9
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 6.5e-290 1000.7 829 66.5
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.2e-289 998.0 844 66.8
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 2.7e-288 995.3 858 64.9
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.6e-288 995.0 839 65.3
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 5.1e-287 991.1 847 65.2
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.4e-286 988.0 844 66.2
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.8e-284 982.6 830 65.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.3e-279 965.7 835 64.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 3.9e-279 964.9 835 62.5
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 3.7e-277 958.4 825 66.2
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.9e-273 946.0 842 62.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 7.2e-273 944.1 823 62.0
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.6e-272 943.0 831 62.3
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.1e-272 942.6 821 63.2
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.1e-272 942.6 830 62.4
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 6.1e-272 941.0 855 61.8
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 8.0e-272 940.6 830 62.4
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.4e-271 939.9 827 63.0
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.0e-271 938.7 822 61.7
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.2e-271 937.9 844 64.5
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 4.8e-269 931.4 825 61.3
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-268 930.2 832 60.9
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.2e-267 926.8 838 62.4
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 7.7e-267 924.1 840 62.9
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 8.5e-266 920.6 842 62.2
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 6.8e-263 911.0 841 60.0
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 5.7e-262 907.9 812 62.7
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.8e-261 904.8 828 59.7
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 4.1e-260 901.7 926 55.9
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.3e-258 896.7 842 59.4
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 8.5e-258 894.0 815 61.3
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 8.5e-258 894.0 815 61.3
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 4.2e-257 891.7 816 61.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.1e-256 889.4 832 60.0
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.6e-256 888.6 816 61.9
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.6e-256 888.6 816 61.9
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 7.5e-254 880.9 830 60.7
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 4.9e-253 878.2 786 62.2
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.1e-252 877.1 843 59.5
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 2.1e-248 862.8 880 58.0
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.7e-248 861.7 828 58.6
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-247 859.8 841 59.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 3.0e-242 842.4 865 56.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.9e-241 839.7 827 60.6
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 6.2e-240 834.7 841 57.3
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.2e-237 826.2 845 56.1
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.2e-237 826.2 828 57.4
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.9e-237 825.9 855 55.0
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.7e-237 825.5 842 57.7
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.4e-236 822.8 840 55.6
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 4.6e-227 792.0 827 54.9
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 6.6e-226 788.1 677 63.8
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.2e-224 783.9 686 63.6
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 8.1e-224 781.2 861 54.6
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 7.3e-209 731.5 825 52.2
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 7.3e-209 731.5 620 64.2
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.6e-208 730.3 857 51.1
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.0e-203 711.8 837 51.4
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.4e-199 700.7 562 67.3
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.5e-181 638.3 607 60.0
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 4.5e-174 615.9 596 58.2
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 4.2e-156 556.2 882 40.4
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 9.1e-151 538.5 451 65.2
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 2.6e-145 520.4 377 73.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 7.5e-145 518.8 841 40.7
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 3.4e-137 493.4 883 37.9
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 4.4e-137 493.0 787 39.4
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.5e-132 477.2 386 66.8
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.3e-132 476.9 484 57.0
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.7e-126 457.2 449 58.4
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.5e-116 424.9 447 57.3
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-112 411.4 310 68.4
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 5.1e-109 399.8 941 33.6
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.2e-99 368.6 447 49.0
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 3.2e-95 354.0 292 64.0
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.1e-90 339.0 239 76.6
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 9.9e-89 332.4 329 56.5
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 2.9e-88 330.9 242 74.4
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.4e-87 327.8 227 71.8
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.4e-87 327.8 336 54.2
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.9e-85 320.5 279 67.4
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 7.9e-78 296.2 200 73.5
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 3.8e-72 277.3 265 63.0
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 3.9e-61 240.7 195 66.2
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.5e-60 238.8 953 26.8
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.9e-56 224.6 215 58.1
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 2.1e-54 218.4 158 69.6
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-51 209.1 181 65.2
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 4.2e-47 194.1 217 55.3
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.6e-38 164.5 155 58.7
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 6.8e-37 160.2 153 60.8
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.5e-36 159.1 143 58.7
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 2.0e-36 158.7 172 55.8
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 4.1e-34 151.0 270 41.1
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.7e-32 145.6 579 26.9
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 8.5e-32 143.3 272 39.7
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-30 139.0 279 38.4
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.6e-30 139.0 180 45.6
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 7.5e-28 130.2 699 25.6
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.8e-27 128.3 73 76.7
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.7e-27 127.9 108 63.9
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 4.1e-26 124.4 104 62.5
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 2.7e-25 121.7 849 23.2
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 5.5e-23 114.0 118 55.1
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.3e-19 100.5 76 65.8
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 5.9e-17 94.0 172 44.2
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 2.9e-16 91.7 200 40.0
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 8.6e-16 90.1 203 39.4
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 3.3e-15 88.2 96 51.0
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 7.3e-15 87.0 54 74.1
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.8e-14 85.1 55 76.4
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 8.0e-14 83.6 73 54.8
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 8.9e-13 80.1 83 51.8
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.8e-12 77.4 122 44.3
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 6.4e-11 73.9 58 65.5
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.7e-09 68.6 65 55.4
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 4.6e-09 67.8 111 41.4
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 6.0e-09 67.4 81 49.4
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 1.6e-06 59.3 88 44.3
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.6e-06 59.3 81 44.4
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.6e-06 58.2 67 49.3


User provided reference genes

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