Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G158600 Theobroma cacao HOM05D002881 ORTHO05D002983 1.1e-103 379.8 173 100.0
Thecc.04G051200 Theobroma cacao HOM05D002881 ORTHO05D002983 1.4e-90 336.3 154 99.4
Thecc.05G072600 Theobroma cacao HOM05D002881 ORTHO05D002983 4.1e-90 334.7 154 98.7
Thecc.07G191800 Theobroma cacao HOM05D002881 ORTHO05D002983 5.4e-90 334.3 154 98.7
Thecc.02G286200 Theobroma cacao HOM05D002881 ORTHO05D002983 5.8e-68 261.2 151 77.5
Thecc.10G137400 Theobroma cacao HOM05D002881 ORTHO05D002983 1.3e-62 243.4 152 69.7
Thecc.05G210100 Theobroma cacao HOM05D002881 ORTHO05D002983 4.8e-62 241.5 152 69.1
Duzib235G1144 Durio zibethinus HOM05D002881 ORTHO05D002983 1.2e-44 183.7 155 51.0
Thecc.06G098800 Theobroma cacao HOM05D002881 ORTHO05D010329 5.5e-42 174.9 152 53.9
Thecc.03G121800 Theobroma cacao HOM05D002881 ORTHO05D002983 2.1e-33 146.4 152 45.4
Gorai.010G160500 Gossypium raimondii HOM05D002881 ORTHO05D002983 2.8e-30 136.0 146 45.2
Thecc.08G178300 Theobroma cacao HOM05D002881 ORTHO05D002983 7.0e-29 131.3 131 48.1
Gohir.D12G068401 Gossypium hirsutum HOM05D002881 ORTHO05D002983 2.1e-25 119.8 127 44.1
COL.COLO4_36857 Corchorus olitorius HOM05D015028 ORTHO05D002983 6.1e-25 118.2 136 40.4
Gorai.001G080800 Gossypium raimondii HOM05D002881 ORTHO05D002983 1.8e-24 116.7 139 40.3
COL.COLO4_03287 Corchorus olitorius HOM05D015028 ORTHO05D002983 2.3e-24 116.3 136 37.5
Gohir.A04G057152 Gossypium hirsutum HOM05D002881 ORTHO05D002983 2.3e-24 116.3 128 39.8
Gohir.D01G148150 Gossypium hirsutum HOM05D002881 ORTHO05D002983 1.1e-23 114.0 127 41.7
Gohir.D13G093150 Gossypium hirsutum HOM05D002881 ORTHO05D002983 1.3e-22 110.5 128 42.2
Duzib151G1070 Durio zibethinus HOM05D002881 ORTHO05D002983 4.5e-20 102.1 103 49.5
Sed0006040 Sechium edule HOM05D002881 ORTHO05D010329 1.7e-19 100.1 142 35.2
COL.COLO4_37633 Corchorus olitorius HOM05D015028 ORTHO05D002983 5.5e-18 95.1 85 49.4
MELO3C025327.2 Cucumis melo HOM05D002881 ORTHO05D002983 9.4e-18 94.4 137 33.6
TWI56G0801 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 2.7e-17 92.8 154 30.5
Gorai.010G121200 Gossypium raimondii HOM05D002881 ORTHO05D002983 5.7e-15 85.1 69 56.5
MELO3C034570.2 Cucumis melo HOM05D002881 ORTHO05D002983 4.8e-14 82.0 107 36.4
MELO3C028745.2 Cucumis melo HOM05D002881 ORTHO05D002983 6.3e-14 81.6 110 36.4
MELO3C034687.2 Cucumis melo HOM05D002881 ORTHO05D002983 1.4e-13 80.5 95 37.9
TWI23G0459 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 5.4e-13 78.6 109 34.9
TWI79G0344 Tripterygium wilfordii HOM05D002881 ORTHO05D002983 2.0e-12 76.6 127 30.7
MELO3C032930.2 Cucumis melo HOM05D002881 ORTHO05D002983 4.5e-12 75.5 105 35.2
Thecc.02G279500 Theobroma cacao HOM05D002881 ORTHO05D010329 7.7e-12 74.7 150 30.0
MELO3C033597.2 Cucumis melo HOM05D002881 ORTHO05D002983 1.7e-11 73.6 84 40.5
Medtr2g049380 Medicago truncatula HOM05D002881 ORTHO05D002983 7.2e-10 68.2 108 28.7
Medtr0866s0010 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-09 67.4 108 28.7
Medtr5g028560 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-09 67.4 121 29.8
Medtr3g018710 Medicago truncatula HOM05D002881 ORTHO05D002983 2.1e-09 66.6 99 33.3
Thecc.02G226000 Theobroma cacao HOM05D002881 ORTHO05D002983 2.1e-09 66.6 35 71.4
MELO3C034633.2 Cucumis melo HOM05D002881 ORTHO05D002983 2.7e-09 66.2 58 46.6
Medtr0029s0060 Medicago truncatula HOM05D002881 ORTHO05D002983 3.6e-09 65.9 121 29.8
Medtr4g009470 Medicago truncatula HOM05D002881 ORTHO05D002983 6.1e-09 65.1 119 31.1
Medtr5g015640 Medicago truncatula HOM05D002881 ORTHO05D002983 6.1e-09 65.1 121 29.8
Medtr6g027000 Medicago truncatula HOM05D002881 ORTHO05D002983 6.1e-09 65.1 121 29.8
Medtr7g028120 Medicago truncatula HOM05D002881 ORTHO05D002983 6.1e-09 65.1 121 29.8
Medtr3g020590 Medicago truncatula HOM05D002881 ORTHO05D002983 8.0e-09 64.7 121 29.8
Medtr4g054440 Medicago truncatula HOM05D002881 ORTHO05D002983 8.0e-09 64.7 98 32.7
Medtr6g084020 Medicago truncatula HOM05D002881 ORTHO05D002983 8.0e-09 64.7 109 28.4
Medtr7g079940 Medicago truncatula HOM05D002881 ORTHO05D002983 8.0e-09 64.7 108 30.6
Medtr3g100770 Medicago truncatula HOM05D002881 ORTHO05D002983 1.0e-08 64.3 121 29.8
Medtr5g036210 Medicago truncatula HOM05D002881 ORTHO05D002983 1.0e-08 64.3 121 29.8
Medtr5g040810 Medicago truncatula HOM05D002881 ORTHO05D002983 1.0e-08 64.3 121 28.9
Medtr5g074255 Medicago truncatula HOM05D002881 ORTHO05D002983 1.4e-08 63.9 108 31.5
Thecc.10G091900 Theobroma cacao HOM05D002881 ORTHO05D010329 1.4e-08 63.9 29 93.1
Medtr4g031710 Medicago truncatula HOM05D002881 ORTHO05D002983 1.8e-08 63.5 98 32.7
TPR.G35764 Trifolium pratense HOM05D002881 ORTHO05D002983 1.8e-08 63.5 113 32.7
Medtr0047s0160 Medicago truncatula HOM05D002881 ORTHO05D002983 2.3e-08 63.2 98 31.6
Medtr1g053435 Medicago truncatula HOM05D002881 ORTHO05D002983 2.3e-08 63.2 98 31.6
Medtr5g084310 Medicago truncatula HOM05D002881 ORTHO05D002983 3.0e-08 62.8 108 30.6
Medtr5g085650 Medicago truncatula HOM05D002881 ORTHO05D002983 3.0e-08 62.8 108 30.6
Medtr7g045955 Medicago truncatula HOM05D002881 ORTHO05D002983 3.0e-08 62.8 98 31.6
CsaV3_1G030040 Cucumis sativus L. HOM05D002881 ORTHO05D002983 4.0e-08 62.4 72 36.1
Medtr1g018990 Medicago truncatula HOM05D002881 ORTHO05D002983 4.0e-08 62.4 108 30.6
Medtr3g015377 Medicago truncatula HOM05D002881 ORTHO05D002983 4.0e-08 62.4 98 31.6
Medtr3g082580 Medicago truncatula HOM05D002881 ORTHO05D002983 4.0e-08 62.4 108 30.6
Medtr3g034870 Medicago truncatula HOM05D002881 ORTHO05D002983 5.2e-08 62.0 98 31.6
Medtr3g051650 Medicago truncatula HOM05D002881 ORTHO05D002983 5.2e-08 62.0 124 27.4
Medtr3g058020 Medicago truncatula HOM05D002881 ORTHO05D002983 5.2e-08 62.0 98 31.6
Medtr3g060990 Medicago truncatula HOM05D002881 ORTHO05D002983 5.2e-08 62.0 98 31.6
Medtr5g005270 Medicago truncatula HOM05D002881 ORTHO05D002983 5.2e-08 62.0 98 31.6
Medtr5g011880 Medicago truncatula HOM05D002881 ORTHO05D002983 5.2e-08 62.0 98 31.6
Medtr8g038320 Medicago truncatula HOM05D002881 ORTHO05D002983 5.2e-08 62.0 98 31.6
Medtr3g022320 Medicago truncatula HOM05D002881 ORTHO05D002983 6.8e-08 61.6 98 31.6
Medtr3g067340 Medicago truncatula HOM05D002881 ORTHO05D002983 8.8e-08 61.2 124 27.4
Medtr5g080530 Medicago truncatula HOM05D002881 ORTHO05D002983 8.8e-08 61.2 124 27.4
Medtr7g006680 Medicago truncatula HOM05D002881 ORTHO05D002983 8.8e-08 61.2 124 27.4
Ca_07212_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 1.2e-07 60.8 78 37.2
Medtr7g046110 Medicago truncatula HOM05D002881 ORTHO05D002983 1.2e-07 60.8 124 27.4
Medtr0048s0010 Medicago truncatula HOM05D002881 ORTHO05D002983 1.5e-07 60.5 108 31.5
Medtr3g013580 Medicago truncatula HOM05D002881 ORTHO05D002983 1.5e-07 60.5 124 27.4
TPR.G36338 Trifolium pratense HOM05D002881 ORTHO05D002983 2.6e-07 59.7 106 29.2
Ca_18459_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 3.4e-07 59.3 75 37.3
Medtr2g435990 Medicago truncatula HOM05D002881 ORTHO05D002983 3.4e-07 59.3 99 35.4
Medtr4g039657 Medicago truncatula HOM05D002881 ORTHO05D002983 3.4e-07 59.3 55 41.8
Medtr5g470710 Medicago truncatula HOM05D002881 ORTHO05D002983 3.4e-07 59.3 53 43.4
Ca_23936_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 4.4e-07 58.9 145 25.5
Medtr0038s0010 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr0143s0020 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr0336s0030 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr0350s0030 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr2g038655 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr3g023410 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 108 30.6
Medtr3g026088 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr4g016445 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr5g015985 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr5g423980 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr7g010875 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr7g071103 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr7g077015 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 108 30.6
Medtr7g081465 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
Medtr8g047030 Medicago truncatula HOM05D002881 ORTHO05D002983 4.4e-07 58.9 53 43.4
TPR.G18565 Trifolium pratense HOM05D002881 ORTHO05D002983 4.4e-07 58.9 58 44.8
Medtr2g090930 Medicago truncatula HOM05D002881 ORTHO05D002983 5.7e-07 58.5 53 43.4
Medtr3g047220 Medicago truncatula HOM05D002881 ORTHO05D002983 5.7e-07 58.5 107 29.0
Medtr6g061790 Medicago truncatula HOM05D002881 ORTHO05D002983 5.7e-07 58.5 108 30.6
Medtr6g072867 Medicago truncatula HOM05D002881 ORTHO05D002983 5.7e-07 58.5 103 33.0
Medtr8g052425 Medicago truncatula HOM05D002881 ORTHO05D002983 5.7e-07 58.5 53 43.4
Medtr0418s0010 Medicago truncatula HOM05D002881 ORTHO05D002983 7.5e-07 58.2 99 34.3
Medtr3g091160 Medicago truncatula HOM05D002881 ORTHO05D002983 7.5e-07 58.2 124 26.6
Medtr4g044730 Medicago truncatula HOM05D002881 ORTHO05D002983 7.5e-07 58.2 98 30.6
Medtr7g071873 Medicago truncatula HOM05D002881 ORTHO05D002983 7.5e-07 58.2 53 41.5
Ca_22303_v3 Cicer arietinum L. HOM05D010731 ORTHO05D002983 9.8e-07 57.8 136 26.5
Medtr1g051570 Medicago truncatula HOM05D002881 ORTHO05D002983 9.8e-07 57.8 99 32.3
Medtr3g049113 Medicago truncatula HOM05D002881 ORTHO05D002983 9.8e-07 57.8 53 41.5
Medtr6g046375 Medicago truncatula HOM05D002881 ORTHO05D002983 9.8e-07 57.8 53 41.5
Medtr7g010390 Medicago truncatula HOM05D002881 ORTHO05D002983 9.8e-07 57.8 98 30.6
Medtr0089s0070 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 103 31.1
Medtr1g036610 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 108 28.7
Medtr3g451310 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 53 41.5
Medtr3g457840 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 53 41.5
Medtr4g049270 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 51 43.1
Medtr4g465410 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 53 41.5
Medtr5g041255 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 53 41.5
Medtr5g059485 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 53 43.4
Medtr5g071147 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 53 41.5
Medtr5g078975 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 53 41.5
Medtr5g095335 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 53 41.5
Medtr6g074695 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 53 41.5
Medtr8g442840 Medicago truncatula HOM05D002881 ORTHO05D002983 1.3e-06 57.4 99 32.3
Dinv18789 Davidia involucrata HOM05D012821 ORTHO05D001422 1.7e-06 57.0 101 34.7
Medtr0237s0060 Medicago truncatula HOM05D002881 ORTHO05D002983 1.7e-06 57.0 53 41.5
Medtr3g026893 Medicago truncatula HOM05D002881 ORTHO05D002983 1.7e-06 57.0 103 31.1
Medtr3g046487 Medicago truncatula HOM05D002881 ORTHO05D002983 1.7e-06 57.0 57 38.6
Medtr3g451910 Medicago truncatula HOM05D002881 ORTHO05D002983 1.7e-06 57.0 51 41.2
Medtr4g044687 Medicago truncatula HOM05D002881 ORTHO05D002983 1.7e-06 57.0 99 33.3
Medtr0089s0130 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 103 31.1
Medtr0109s0050 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 57 38.6
Medtr0143s0050 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 103 31.1
Medtr3g026875 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 57 38.6
Medtr4g043765 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 57 38.6
Medtr5g081070 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 90 30.0
Medtr6g065615 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 57 38.6
Medtr6g073790 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 70 35.7
Medtr7g046515 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 57 38.6
Medtr8g009322 Medicago truncatula HOM05D002881 ORTHO05D002983 2.2e-06 56.6 103 31.1
Nitab4.5_0001510g0080 Nicotiana tabacum HOM05D002047 ORTHO05D001422 2.2e-06 56.6 79 35.4
Ca_02961_v3 Cicer arietinum L. HOM05D010731 ORTHO05D002983 2.8e-06 56.2 157 25.5
Ca_14824_v3 Cicer arietinum L. HOM05D002881 ORTHO05D002983 2.8e-06 56.2 78 35.9
Medtr0029s0020 Medicago truncatula HOM05D002881 ORTHO05D002983 2.8e-06 56.2 57 38.6
Medtr0089s0050 Medicago truncatula HOM05D002881 ORTHO05D002983 2.8e-06 56.2 57 38.6
Medtr3g448820 Medicago truncatula HOM05D002881 ORTHO05D002983 2.8e-06 56.2 57 38.6
Medtr5g060015 Medicago truncatula HOM05D002881 ORTHO05D002983 2.8e-06 56.2 99 32.3
Medtr6g464470 Medicago truncatula HOM05D002881 ORTHO05D002983 2.8e-06 56.2 57 38.6
Medtr6g014055 Medicago truncatula HOM05D002881 ORTHO05D002983 3.7e-06 55.8 53 41.5
Medtr6g466430 Medicago truncatula HOM05D002881 ORTHO05D002983 3.7e-06 55.8 57 38.6
Medtr6g471550 Medicago truncatula HOM05D002881 ORTHO05D002983 3.7e-06 55.8 108 29.6
Nitab4.5_0001165g0050 Nicotiana tabacum HOM05D002047 ORTHO05D001422 3.7e-06 55.8 83 32.5
Medtr2g065338 Medicago truncatula HOM05D002881 ORTHO05D002983 4.9e-06 55.5 53 39.6
Nitab4.5_0003207g0020 Nicotiana tabacum HOM05D002047 ORTHO05D001422 4.9e-06 55.5 96 30.2
TPR.G14977 Trifolium pratense HOM05D002881 ORTHO05D002983 4.9e-06 55.5 57 38.6
Nitab4.5_0011312g0040 Nicotiana tabacum HOM05D002047 ORTHO05D001422 6.3e-06 55.1 79 34.2
Medtr6g072130 Medicago truncatula HOM05D002881 ORTHO05D002983 8.3e-06 54.7 63 36.5
Nitab4.5_0010859g0020 Nicotiana tabacum HOM05D002047 ORTHO05D001422 8.3e-06 54.7 79 32.9


User provided reference genes

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