Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 5.5e-181 637.5 317 100.0
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 3.0e-126 455.7 281 81.1
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 1.5e-122 443.4 274 81.8
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 2.2e-121 439.5 274 81.0
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 3.9e-110 402.1 277 71.8
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 9.9e-106 387.5 282 67.7
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 2.1e-103 379.8 282 65.6
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 3.3e-101 372.5 278 66.5
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 7.3e-101 371.3 267 67.0
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 9.6e-101 370.9 275 66.9
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 8.9e-99 364.4 277 65.3
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 4.4e-98 362.1 265 65.3
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 4.4e-98 362.1 265 65.3
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 1.3e-97 360.5 266 66.9
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 2.9e-97 359.4 266 64.3
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 1.1e-96 357.5 265 64.9
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 1.4e-96 357.1 277 62.8
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 5.4e-96 355.1 280 62.5
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 7.1e-96 354.8 274 64.2
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 7.1e-96 354.8 274 63.9
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 2.7e-95 352.8 273 64.5
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 7.8e-95 351.3 266 63.5
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 1.7e-94 350.1 276 63.8
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 1.7e-94 350.1 271 63.8
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 2.3e-94 349.7 282 62.1
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 1.5e-93 347.1 284 62.0
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 1.9e-93 346.7 284 62.0
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 3.3e-93 345.9 284 60.9
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 9.6e-93 344.4 277 63.2
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 9.6e-93 344.4 292 60.3
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 9.6e-93 344.4 292 60.3
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 2.8e-92 342.8 272 62.1
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 2.8e-92 342.8 202 82.7
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 3.6e-92 342.4 281 60.9
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 3.6e-92 342.4 266 62.8
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 4.8e-92 342.0 283 60.4
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 6.2e-92 341.7 277 63.2
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 8.1e-92 341.3 276 62.0
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 1.1e-91 340.9 284 60.6
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 1.4e-91 340.5 210 83.8
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 2.4e-91 339.7 283 60.4
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 4.0e-91 339.0 281 61.9
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 6.9e-91 338.2 276 61.6
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 2.6e-90 336.3 280 61.4
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 2.6e-90 336.3 285 58.2
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 4.5e-90 335.5 295 59.3
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 9.9e-90 334.3 276 60.5
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 1.7e-89 333.6 281 59.8
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 2.2e-89 333.2 286 58.7
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 2.2e-89 333.2 289 58.8
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 2.9e-89 332.8 292 58.6
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 3.8e-89 332.4 295 58.6
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 4.9e-89 332.0 288 60.4
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 8.4e-89 331.3 284 59.9
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 5.4e-88 328.6 280 59.3
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 9.3e-88 327.8 276 61.2
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 9.3e-88 327.8 276 62.0
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 2.7e-87 326.2 274 61.3
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 3.5e-87 325.9 295 59.0
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 3.5e-87 325.9 283 60.8
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 1.0e-86 324.3 281 60.1
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 1.3e-86 323.9 304 56.2
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 5.1e-86 322.0 297 57.6
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 9.6e-85 317.8 241 64.3
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 1.3e-84 317.4 286 55.6
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 1.6e-84 317.0 281 55.5
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 2.8e-84 316.2 276 58.3
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 3.6e-84 315.8 279 55.6
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 1.8e-83 313.5 282 58.5
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 2.0e-82 310.1 282 56.0
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.3e-81 307.4 290 56.2
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 2.2e-81 306.6 266 56.8
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 1.5e-77 293.9 282 54.3
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 7.4e-77 291.6 284 53.9
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 2.1e-76 290.0 286 52.1
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 1.5e-74 283.9 202 65.8
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 7.6e-74 281.6 276 52.2
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 1.0e-73 281.2 289 51.6
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 1.7e-73 280.4 300 52.7
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 4.2e-64 249.2 246 54.1
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 7.2e-64 248.4 249 53.8
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.4e-56 224.2 264 46.2
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 2.3e-54 216.9 266 45.1
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 3.3e-53 213.0 249 47.0
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 2.6e-50 203.4 230 49.1
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 2.8e-44 183.3 258 40.7
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 3.1e-43 179.9 128 64.1
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 2.7e-39 166.8 98 76.5
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 3.0e-38 163.3 117 59.8
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 3.3e-37 159.8 145 57.9
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 6.1e-31 139.0 180 43.9
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 2.7e-26 123.6 153 45.8
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 2.9e-25 120.2 215 37.7
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 5.0e-25 119.4 134 53.0
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 3.1e-19 100.1 95 60.0
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 1.6e-10 71.2 89 48.3
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 2.0e-10 70.9 77 49.4
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 1.3e-09 68.2 82 51.2
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 4.3e-08 63.2 71 53.5


User provided reference genes

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