Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 6.0e-75 284.3 162 100.0
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 4.3e-57 224.9 161 82.0
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 2.4e-55 219.2 163 82.8
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.2e-53 212.6 162 80.2
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.6e-51 206.5 162 78.4
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.5e-44 181.4 162 72.2
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 9.4e-36 154.1 162 64.2
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 8.2e-32 141.0 136 69.9
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 1.8e-31 139.8 98 80.6
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.8e-31 139.8 128 71.9
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 7.7e-30 134.4 178 56.7
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 5.0e-29 131.7 180 59.4
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.1e-28 130.6 150 60.0
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 4.2e-28 128.6 174 57.5
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.5e-28 128.3 173 56.6
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 9.4e-28 127.5 175 57.1
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.2e-27 127.1 177 54.8
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 2.7e-27 125.9 173 56.1
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 6.1e-27 124.8 176 54.5
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.3e-26 122.9 127 65.4
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 3.0e-26 122.5 172 54.7
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 5.2e-26 121.7 162 57.4
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.2e-26 121.7 173 55.5
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.2e-26 121.7 173 55.5
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 8.8e-26 120.9 181 55.2
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 1.5e-25 120.2 175 53.1
Gorai.001G244300 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.6e-25 119.4 100 67.0
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.3e-25 119.0 162 56.8
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 4.4e-25 118.6 181 55.2
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 9.7e-25 117.5 183 53.6
Gohir.D07G172500 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.3e-24 117.1 100 68.0
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.7e-24 116.7 124 64.5
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 3.7e-24 115.5 179 53.6
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 8.2e-24 114.4 145 61.4
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 8.2e-24 114.4 165 53.3
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 1.1e-23 114.0 183 53.6
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.1e-23 114.0 87 72.4
Gohir.D12G083501 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.1e-23 114.0 100 66.0
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 1.4e-23 113.6 166 56.6
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.4e-23 113.6 129 62.0
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 2.4e-23 112.8 166 54.8
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 2.4e-23 112.8 166 56.6
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 3.1e-23 112.5 166 56.6
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.1e-23 112.1 184 53.3
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 9.1e-23 110.9 120 60.8
Gohir.A01G038800 Gossypium hirsutum HOM05D004577 ORTHO05D005062 9.1e-23 110.9 100 65.0
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.0e-22 109.8 164 53.7
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.7e-22 109.4 183 52.5
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.5e-22 109.0 129 60.5
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 3.5e-22 109.0 108 74.1
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 4.5e-22 108.6 142 58.5
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 5.9e-22 108.2 121 63.6
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 7.7e-22 107.8 119 64.7
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.0e-21 107.5 162 56.2
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.3e-21 107.1 102 73.5
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.3e-21 107.1 102 73.5
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.7e-21 106.7 165 55.2
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 2.9e-21 105.9 98 72.4
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.9e-21 105.9 129 59.7
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.9e-21 105.9 167 51.5
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.8e-21 105.5 129 62.0
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 3.8e-21 105.5 167 51.5
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 3.8e-21 105.5 127 60.6
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 6.5e-21 104.8 97 73.2
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 6.5e-21 104.8 168 51.8
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 8.5e-21 104.4 96 74.0
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 8.5e-21 104.4 170 51.2
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 8.5e-21 104.4 140 57.1
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.1e-20 104.0 167 51.5
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.9e-20 103.2 98 69.4
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 2.5e-20 102.8 160 51.9
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.2e-20 102.4 68 92.6
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 3.2e-20 102.4 107 69.2
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 4.2e-20 102.1 125 60.8
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 4.2e-20 102.1 112 69.6
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 4.2e-20 102.1 113 60.2
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 5.5e-20 101.7 101 67.3
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 5.5e-20 101.7 128 59.4
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 5.5e-20 101.7 167 52.7
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 7.2e-20 101.3 167 48.5
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 9.4e-20 100.9 87 74.7
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 9.4e-20 100.9 106 68.9
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 9.4e-20 100.9 87 74.7
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.2e-19 100.5 162 53.7
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 1.2e-19 100.5 172 48.8
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.6e-19 100.1 162 51.2
Gohir.D11G274650 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.1e-19 99.8 78 70.5
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 2.1e-19 99.8 105 71.4
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.6e-19 99.0 68 91.2
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.7e-19 98.6 125 59.2
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 4.7e-19 98.6 104 70.2
Gorai.001G066700 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.7e-19 98.6 91 63.7
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 6.1e-19 98.2 112 67.0
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 6.1e-19 98.2 112 67.0
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 6.1e-19 98.2 112 67.0
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.0e-18 97.4 105 69.5
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 1.4e-18 97.1 106 69.8
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.3e-18 96.3 165 50.9
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.3e-18 96.3 154 44.8
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 4.0e-18 95.5 171 50.3
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 4.0e-18 95.5 107 62.6
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 4.0e-18 95.5 162 49.4
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.2e-18 95.1 107 67.3
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 5.2e-18 95.1 153 51.0
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 6.8e-18 94.7 160 53.8
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 6.8e-18 94.7 156 50.0
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 8.8e-18 94.4 137 56.2
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.2e-17 94.0 112 65.2
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.5e-17 93.6 68 79.4
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.5e-17 93.6 112 63.4
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 2.0e-17 93.2 107 67.3
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.6e-17 92.8 107 63.6
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 4.4e-17 92.0 107 63.6
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 7.5e-17 91.3 100 67.0
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 9.8e-17 90.9 102 67.6
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 9.8e-17 90.9 197 44.7
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 1.7e-16 90.1 127 54.3
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.2e-16 89.7 124 56.5
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 2.2e-16 89.7 109 63.3
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.2e-16 89.7 68 82.4
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 2.8e-16 89.4 124 60.5
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 3.7e-16 89.0 114 58.8
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 4.8e-16 88.6 68 82.4
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 4.8e-16 88.6 130 56.9
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 4.8e-16 88.6 100 68.0
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 6.3e-16 88.2 154 53.2
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 6.3e-16 88.2 169 49.7
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 6.3e-16 88.2 123 59.3
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 6.3e-16 88.2 146 52.7
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.4e-15 87.0 151 49.7
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 2.4e-15 86.3 109 58.7
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 4.1e-15 85.5 115 61.7
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 5.4e-15 85.1 96 59.4
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 5.4e-15 85.1 167 50.9
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 9.1e-15 84.3 102 64.7
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.6e-14 83.6 148 48.6
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.6e-14 83.6 115 53.9
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.6e-14 83.6 159 50.9
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.0e-14 83.2 89 68.5
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.7e-14 81.3 97 60.8
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.0e-13 80.9 165 43.0
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 5.0e-13 78.6 154 48.1
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.1e-12 77.4 159 44.0
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.1e-12 77.4 141 48.2
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.5e-12 77.0 83 66.3
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.2e-12 75.5 186 42.5
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.2e-11 73.9 112 56.2
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.7e-11 72.8 112 55.4
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 4.7e-11 72.0 104 54.8
Sabra11G0141000 Salix brachista HOM05D002312 ORTHO05D006455 4.7e-11 72.0 89 48.3
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 1.0e-10 70.9 120 55.0
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.0e-10 70.9 124 51.6
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 3.0e-10 69.3 125 53.6
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.7e-08 63.5 124 48.4
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 1.1e-07 60.8 104 51.9
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 3.1e-07 59.3 123 46.3
FvH4_3g42261 Fragaria vesca HOM05D019050 ORTHO05D035443 7.0e-07 58.2 141 46.8
Aa31LG6G11730 Aethionema arabicum HOM05D004577 ORTHO05D005062 9.2e-07 57.8 150 44.0
FAN16G1216 Fragaria x ananassa HOM05D019050 ORTHO05D035374 1.6e-06 57.0 141 46.8
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 2.7e-06 56.2 114 41.2
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 3.5e-06 55.8 81 50.6
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 5.9e-06 55.1 165 41.8
Aa31LG10G60 Aethionema arabicum HOM05D004577 ORTHO05D005062 7.7e-06 54.7 64 51.6
Medtr5g032760 Medicago truncatula HOM05D011393 ORTHO05D013493 7.7e-06 54.7 147 42.2


User provided reference genes

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