Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G150400 Theobroma cacao HOM05D000003 ORTHO05D002259 2.0e-62 242.3 122 100.0
Thecc.04G000700 Theobroma cacao HOM05D000003 ORTHO05D002259 2.6e-14 82.4 90 52.2
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-13 80.1 78 52.6
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 3.8e-13 78.6 79 51.9
COL.COLO4_27741 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.1e-12 77.0 70 51.4
Atru.chr6.253 Acer truncatum HOM05D000003 ORTHO05D002259 1.4e-12 76.6 73 50.7
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 5.4e-12 74.7 75 50.7
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 7.1e-12 74.3 73 49.3
Atru.chr13.1770 Acer truncatum HOM05D000003 ORTHO05D002259 3.5e-11 72.0 117 36.8
Atru.chr2.2563 Acer truncatum HOM05D000003 ORTHO05D002259 6.0e-11 71.2 107 37.4
Thecc.04G262700 Theobroma cacao HOM05D000003 ORTHO05D002259 6.0e-11 71.2 82 45.1
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 7.9e-11 70.9 76 46.1
Atru.chr1.3206 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-10 70.5 74 48.6
COL.COLO4_32709 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.0e-10 70.5 77 48.1
Hma1.2p1_1132F.1_g260220 Hydrangea macrophylla HOM05D000155 ORTHO05D000022 1.0e-10 70.5 108 38.0
Thecc.06G027200 Theobroma cacao HOM05D000003 ORTHO05D002259 1.0e-10 70.5 82 43.9
Thecc.05G035100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-10 70.1 79 45.6
Thecc.03G002300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-10 69.7 91 44.0
Atru.chr2.2465 Acer truncatum HOM05D000003 ORTHO05D002259 2.3e-10 69.3 81 44.4
Hma1.2p1_1241F.1_g269710 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.9e-10 68.6 64 56.2
Thecc.01G176600 Theobroma cacao HOM05D000003 ORTHO05D002259 3.9e-10 68.6 79 48.1
Atru.chr1.2519 Acer truncatum HOM05D000003 ORTHO05D002259 1.5e-09 66.6 72 43.1
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-09 66.6 71 47.9
Atru.chr8.1166 Acer truncatum HOM05D003047 ORTHO05D000627 1.5e-09 66.6 80 45.0
Duzib264G0111 Durio zibethinus HOM05D000003 ORTHO05D002259 1.9e-09 66.2 90 43.3
Atru.chr10.984 Acer truncatum HOM05D000502 ORTHO05D002259 3.3e-09 65.5 83 47.0
Thecc.06G027000 Theobroma cacao HOM05D000003 ORTHO05D002259 3.3e-09 65.5 117 35.0
Thecc.K0005100 Theobroma cacao HOM05D000003 ORTHO05D002259 3.3e-09 65.5 82 42.7
Atru.chr3.2994 Acer truncatum HOM05D000003 ORTHO05D002259 4.3e-09 65.1 72 45.8
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-09 65.1 81 43.2
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 5.6e-09 64.7 81 40.7
Cpa.g.sc80.115 Carica papaya HOM05D001107 ORTHO05D001095 7.4e-09 64.3 75 45.3
COL.COLO4_22651 Corchorus olitorius HOM05D000003 ORTHO05D002259 7.4e-09 64.3 59 52.5
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 9.6e-09 63.9 78 42.3
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 63.5 71 45.1
Thecc.04G004700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-08 63.5 64 51.6
Thecc.06G100900 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-08 63.5 73 43.8
COL.COLO4_20696 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.6e-08 63.2 79 41.8
Thecc.02G166000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.6e-08 63.2 80 40.0
Atru.chr1.3836 Acer truncatum HOM05D000003 ORTHO05D002259 2.1e-08 62.8 58 53.4
Atru.chr2.2918 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-08 62.8 82 45.1
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-08 62.0 65 47.7
COL.COLO4_06100 Corchorus olitorius HOM05D000003 ORTHO05D002259 3.7e-08 62.0 67 43.3
Thecc.04G117300 Theobroma cacao HOM05D000003 ORTHO05D002259 4.8e-08 61.6 76 39.5
Atru.chr7.902 Acer truncatum HOM05D000003 ORTHO05D002259 6.2e-08 61.2 65 43.1
Hma1.2p1_0585F.1_g183600 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 6.2e-08 61.2 56 55.4
Atru.chr13.1845 Acer truncatum HOM05D000003 ORTHO05D002259 8.1e-08 60.8 75 45.3
Thecc.05G076400 Theobroma cacao HOM05D000003 ORTHO05D002259 8.1e-08 60.8 70 45.7
Atru.chr10.950 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-07 60.5 64 46.9
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 60.5 76 46.1
Atru.chr7.607 Acer truncatum HOM05D000003 ORTHO05D002259 1.1e-07 60.5 72 45.8
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 1.4e-07 60.1 64 45.3
Atru.chr3.2345 Acer truncatum HOM05D000003 ORTHO05D002259 1.4e-07 60.1 64 46.9
Atru.chr5.1380 Acer truncatum HOM05D000003 ORTHO05D002259 1.4e-07 60.1 115 34.8
Atru.chr6.208 Acer truncatum HOM05D000003 ORTHO05D002259 1.4e-07 60.1 64 45.3
Hma1.2p1_0055F.1_g031300 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.4e-07 60.1 103 36.9
Thecc.02G094300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-07 60.1 66 45.5
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.4e-07 60.1 81 42.0
Atru.chr1.3979 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-07 59.7 109 35.8
Atru.chr6.413 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-07 59.7 68 45.6
Hma1.2p1_3154F.1_g333360 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.8e-07 59.7 149 30.9
Atru.chr2.1988 Acer truncatum HOM05D000003 ORTHO05D002259 2.4e-07 59.3 75 44.0
MBI16_g06244_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.4e-07 59.3 78 41.0
Thecc.02G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 2.4e-07 59.3 84 48.8
Atru.chr1.182 Acer truncatum HOM05D000003 ORTHO05D002259 3.1e-07 58.9 66 43.9
Atru.chr5.2972 Acer truncatum HOM05D000003 ORTHO05D002259 3.1e-07 58.9 117 32.5
Thecc.04G103900 Theobroma cacao HOM05D000003 ORTHO05D002259 3.1e-07 58.9 60 50.0
Atru.chr10.991 Acer truncatum HOM05D000003 ORTHO05D002259 4.0e-07 58.5 74 43.2
Atru.chr5.3360 Acer truncatum HOM05D000003 ORTHO05D002259 4.0e-07 58.5 66 42.4
Atru.chr7.765 Acer truncatum HOM05D000003 ORTHO05D002259 4.0e-07 58.5 73 41.1
COL.COLO4_05921 Corchorus olitorius HOM05D008457 ORTHO05D029079 4.0e-07 58.5 93 36.6
Hma1.2p1_3886F.1_g337920 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.3e-07 58.2 62 46.8
Atru.chr11.1599 Acer truncatum HOM05D000003 ORTHO05D002259 6.9e-07 57.8 65 47.7
Atru.chr2.3326 Acer truncatum HOM05D000003 ORTHO05D002259 9.0e-07 57.4 76 44.7
Atru.chr13.1833 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-06 57.0 81 44.4
Atru.chr3.2341 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-06 57.0 83 41.0
MBI05_g02408_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.2e-06 57.0 70 41.4
Thecc.09G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-06 57.0 68 45.6
Hma1.2p1_0024F.1_g016160 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.5e-06 56.6 69 42.0
Hma1.2p1_0731F.1_g209885 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.5e-06 56.6 62 46.8
Hma1.2p1_1414F.1_g281865 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.5e-06 56.6 62 46.8
Hma1.2p1_2732F.1_g327655 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 1.5e-06 56.6 62 46.8
MBI11_g16100_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.5e-06 56.6 69 37.7
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.5e-06 56.6 83 41.0
Atru.chr9.1620 Acer truncatum HOM05D000003 ORTHO05D002259 2.0e-06 56.2 119 34.5
Duzib093G1266 Durio zibethinus HOM05D008457 ORTHO05D002259 2.6e-06 55.8 94 38.3
Atru.chr4.2618 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-06 55.5 75 41.3
Atru.chr6.103 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-06 55.5 66 39.4
Atru.chr7.381 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-06 55.5 77 40.3
Hma1.2p1_0353F.1_g133190 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.4e-06 55.5 70 44.3
Thecc.09G040100 Theobroma cacao HOM05D000682 ORTHO05D000510 3.4e-06 55.5 79 38.0
Atru.chr1.1751 Acer truncatum HOM05D000003 ORTHO05D002259 4.5e-06 55.1 77 42.9
Atru.chr12.2402 Acer truncatum HOM05D000003 ORTHO05D002259 4.5e-06 55.1 75 42.7
Atru.chr3.2588 Acer truncatum HOM05D000003 ORTHO05D000022 4.5e-06 55.1 72 40.3
Thecc.06G038000 Theobroma cacao HOM05D066557 ORTHO05D002259 4.5e-06 55.1 81 40.7
Atru.chr2.283 Acer truncatum HOM05D000003 ORTHO05D002259 5.8e-06 54.7 115 31.3
Hma1.2p1_0596F.1_g186305 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.8e-06 54.7 54 51.9
Hma1.2p1_0596F.1_g186310 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.8e-06 54.7 54 51.9
Hma1.2p1_0719F.1_g208490 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 5.8e-06 54.7 74 43.2
Thecc.04G121700 Theobroma cacao HOM05D000003 ORTHO05D002259 5.8e-06 54.7 53 54.7
Thecc.05G094900 Theobroma cacao HOM05D000003 ORTHO05D002259 5.8e-06 54.7 77 41.6
Atru.chr10.866 Acer truncatum HOM05D000003 ORTHO05D002259 7.6e-06 54.3 65 43.1
Atru.chr2.1449 Acer truncatum HOM05D000003 ORTHO05D002259 7.6e-06 54.3 71 39.4
Atru.chr4.1973 Acer truncatum HOM05D000003 ORTHO05D002259 7.6e-06 54.3 58 43.1
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-06 54.3 65 46.2
Hma1.2p1_0897F.1_g234290 Hydrangea macrophylla HOM05D000155 ORTHO05D000022 7.6e-06 54.3 68 44.1
MBI17_g13563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.6e-06 54.3 65 36.9
Thecc.04G054400 Theobroma cacao HOM05D000003 ORTHO05D002259 7.6e-06 54.3 69 44.9
Atru.chr13.2301 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-05 53.9 70 40.0
Atru.chr6.1326 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-05 53.9 71 46.5
MBI08_g23501_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-05 53.9 69 40.6


User provided reference genes

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