Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 2.5e-53 211.8 106 100.0
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 9.8e-42 173.3 106 83.0
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 1.0e-35 153.3 106 74.5
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.3e-35 152.1 110 70.9
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.3e-35 152.1 110 70.9
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 4.9e-25 117.9 109 67.9
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.1e-24 116.7 103 58.3
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.8e-19 97.4 99 52.5
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 8.9e-19 97.1 95 58.9
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 4.4e-18 94.7 96 57.3
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 7.5e-18 94.0 96 57.3
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 9.8e-18 93.6 96 56.2
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 2.2e-17 92.4 104 53.8
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 3.7e-17 91.7 96 56.2
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.1e-16 90.1 98 50.0
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.4e-16 89.7 103 51.5
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 1.9e-16 89.4 103 55.3
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 5.4e-16 87.8 96 51.0
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 7.1e-16 87.4 96 53.1
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 9.2e-16 87.0 117 44.4
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 1.2e-15 86.7 94 52.1
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.1e-15 85.9 97 52.6
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.7e-15 85.5 113 46.0
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.5e-15 85.1 113 45.1
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 4.6e-15 84.7 120 46.7
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 4.6e-15 84.7 101 51.5
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 6.0e-15 84.3 101 48.5
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 6.0e-15 84.3 99 54.5
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 7.8e-15 84.0 124 43.5
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 7.8e-15 84.0 111 47.7
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.7e-14 82.8 95 53.7
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.7e-14 82.8 114 44.7
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 5.1e-14 81.3 107 46.7
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 8.6e-14 80.5 109 45.0
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 8.6e-14 80.5 113 44.2
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.5e-13 79.7 126 40.5
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 1.5e-13 79.7 108 47.2
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 4.3e-13 78.2 106 48.1
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 4.3e-13 78.2 94 46.8
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.6e-13 77.8 103 40.8
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 9.5e-13 77.0 96 43.8
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 9.5e-13 77.0 109 42.2
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 9.5e-13 77.0 114 45.6
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 9.5e-13 77.0 114 45.6
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.2e-12 76.6 98 48.0
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 1.2e-12 76.6 107 46.7
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.2e-12 76.6 94 46.8
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 2.1e-12 75.9 102 45.1
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.1e-12 75.9 93 47.3
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.8e-12 75.5 104 46.2
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 3.6e-12 75.1 102 45.1
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 3.6e-12 75.1 104 43.3
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 3.6e-12 75.1 95 46.3
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 3.6e-12 75.1 93 47.3
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 4.7e-12 74.7 116 43.1
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 6.2e-12 74.3 103 42.7
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 8.1e-12 73.9 101 47.5
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.1e-11 73.6 101 46.5
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-11 73.2 101 46.5
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 1.4e-11 73.2 101 46.5
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 1.8e-11 72.8 101 46.5
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 1.8e-11 72.8 112 42.0
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.8e-11 72.8 113 44.2
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.8e-11 72.8 95 46.3
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 2.3e-11 72.4 104 47.1
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 2.3e-11 72.4 104 47.1
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 2.3e-11 72.4 104 47.1
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.3e-11 72.4 101 46.5
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.3e-11 72.4 104 45.2
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 2.3e-11 72.4 92 45.7
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.3e-11 72.4 104 44.2
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 2.3e-11 72.4 106 44.3
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 3.1e-11 72.0 110 43.6
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.1e-11 72.0 94 46.8
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 4.0e-11 71.6 103 44.7
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 5.2e-11 71.2 95 47.4
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 5.2e-11 71.2 103 45.6
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 5.2e-11 71.2 104 44.2
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 5.2e-11 71.2 95 49.5
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 5.2e-11 71.2 101 46.5
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 6.8e-11 70.9 116 39.7
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 6.8e-11 70.9 103 45.6
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 6.8e-11 70.9 88 48.9
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 6.8e-11 70.9 96 42.7
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 6.8e-11 70.9 105 43.8
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 8.9e-11 70.5 97 48.5
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 8.9e-11 70.5 102 45.1
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 8.9e-11 70.5 102 43.1
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.2e-10 70.1 95 43.2
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.2e-10 70.1 103 44.7
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 1.2e-10 70.1 96 43.8
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 1.2e-10 70.1 98 44.9
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.2e-10 70.1 101 41.6
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 1.5e-10 69.7 115 39.1
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.5e-10 69.7 100 45.0
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 2.0e-10 69.3 104 46.2
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 2.0e-10 69.3 100 42.0
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 2.0e-10 69.3 100 43.0
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 2.0e-10 69.3 103 40.8
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 2.6e-10 68.9 100 43.0
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 2.6e-10 68.9 104 46.2
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 2.6e-10 68.9 100 43.0
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 3.4e-10 68.6 104 44.2
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 3.4e-10 68.6 100 42.0
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 3.4e-10 68.6 100 42.0
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 3.4e-10 68.6 110 40.9
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 4.4e-10 68.2 104 45.2
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 4.4e-10 68.2 104 45.2
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 4.4e-10 68.2 104 45.2
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 4.4e-10 68.2 92 45.7
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 4.4e-10 68.2 104 45.2
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 5.8e-10 67.8 100 43.0
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 5.8e-10 67.8 100 43.0
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 5.8e-10 67.8 100 43.0
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 5.8e-10 67.8 104 46.2
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 7.6e-10 67.4 104 44.2
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 7.6e-10 67.4 100 41.0
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 7.6e-10 67.4 103 39.8
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 9.9e-10 67.0 103 44.7
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.7e-09 66.2 100 42.0
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 1.7e-09 66.2 100 41.0
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 1.7e-09 66.2 92 44.6
Lj4g0014771 Lotus japonicus HOM05D012904 ORTHO05D004090 1.7e-09 66.2 103 41.7
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 2.2e-09 65.9 95 42.1
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 2.2e-09 65.9 97 43.3
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 2.2e-09 65.9 97 43.3
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 2.9e-09 65.5 100 42.0
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.9e-09 65.5 102 42.2
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.9e-09 65.5 94 42.6
Migut.M00649 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.9e-09 65.5 87 42.5
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 2.9e-09 65.5 104 38.5
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 3.8e-09 65.1 97 40.2
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 3.8e-09 65.1 100 43.0
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 4.9e-09 64.7 100 41.0
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 4.9e-09 64.7 98 41.8
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 8.4e-09 63.9 98 41.8
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 8.4e-09 63.9 100 39.0
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 1.1e-08 63.5 110 34.5
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 1.4e-08 63.2 105 38.1
Glyma.05G140700 Glycine max HOM05D012904 ORTHO05D004090 1.4e-08 63.2 107 38.3
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 2.4e-08 62.4 95 40.0
MBI07_g23436_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 2.4e-08 62.4 98 38.8
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 3.2e-08 62.0 92 43.5
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 3.2e-08 62.0 92 43.5
arahy.Tifrunner.gnm1.ann1.SH745U Arachis hypogaea HOM05D012904 ORTHO05D004090 4.1e-08 61.6 108 37.0
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 4.1e-08 61.6 100 41.0
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 7.1e-08 60.8 100 42.0
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 7.1e-08 60.8 109 39.4
DCAR_013798 Daucus carota HOM05D057188 ORTHO05D004090 7.1e-08 60.8 95 44.2
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 7.1e-08 60.8 99 38.4
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 7.1e-08 60.8 100 39.0
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 7.1e-08 60.8 101 39.6
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 9.2e-08 60.5 103 39.8
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.2e-07 60.1 71 47.9
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 2.1e-07 59.3 38 76.3
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.7e-07 58.9 41 70.7
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 4.6e-07 58.2 102 36.3
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 6.0e-07 57.8 32 84.4
TPR.G26259 Trifolium pratense HOM05D012904 ORTHO05D004090 7.8e-07 57.4 97 34.0
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 1.0e-06 57.0 109 34.9
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 1.0e-06 57.0 100 41.0
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.3e-06 56.6 43 67.4
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 1.3e-06 56.6 105 39.0
Medtr2g019320 Medicago truncatula HOM05D012904 ORTHO05D004090 2.3e-06 55.8 118 33.9
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 3.0e-06 55.5 111 39.6
Nn3g20788 Nelumbo nucifera HOM05D004022 ORTHO05D004090 3.0e-06 55.5 100 38.0
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.0e-06 55.5 35 71.4
Sed0018028 Sechium edule HOM05D024889 ORTHO05D004090 3.0e-06 55.5 97 38.1
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.9e-06 55.1 99 37.4
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 8.6e-06 53.9 37 73.0


User provided reference genes

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