Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G144400 Theobroma cacao HOM05D008142 ORTHO05D009674 3.9e-87 324.7 157 100.0
COL.COLO4_17430 Corchorus olitorius HOM05D008142 ORTHO05D009674 1.1e-36 157.1 152 60.5
Thecc.07G144200 Theobroma cacao HOM05D008142 ORTHO05D009674 7.2e-33 144.4 160 51.9
COL.COLO4_17432 Corchorus olitorius HOM05D008142 ORTHO05D009674 2.2e-26 122.9 163 47.9
Gorai.002G040500 Gossypium raimondii HOM05D008142 ORTHO05D009674 2.9e-26 122.5 165 44.8
Gohir.A01G043100 Gossypium hirsutum HOM05D008142 ORTHO05D009674 3.8e-26 122.1 162 43.2
Gohir.D01G033700 Gossypium hirsutum HOM05D008142 ORTHO05D009674 3.8e-26 122.1 145 46.2
Gohir.D01G033600 Gossypium hirsutum HOM05D008142 ORTHO05D009674 5.0e-26 121.7 145 46.9
Gohir.A01G043000 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.1e-25 120.6 162 43.8
Gorai.002G040600 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.1e-25 120.6 162 45.7
Gohir.A01G042800 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.5e-25 120.2 162 43.8
Gohir.D01G033500 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.9e-25 119.8 162 45.7
Gorai.002G040800 Gossypium raimondii HOM05D008142 ORTHO05D009674 3.2e-25 119.0 145 46.2
Gohir.A01G042900 Gossypium hirsutum HOM05D008142 ORTHO05D009674 5.5e-25 118.2 162 43.8
Gohir.D01G033400 Gossypium hirsutum HOM05D008142 ORTHO05D009674 7.2e-25 117.9 162 43.2
Gorai.002G040700 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.2e-24 117.1 145 45.5
Gorai.002G040900 Gossypium raimondii HOM05D008142 ORTHO05D009674 2.1e-24 116.3 162 44.4
Gohir.A01G043200 Gossypium hirsutum HOM05D008142 ORTHO05D009674 8.0e-24 114.4 160 44.4
QL04p069987 Quercus lobata HOM05D008142 ORTHO05D009674 2.3e-23 112.8 152 46.7
Eucgr.F03213 Eucalyptus grandis HOM05D008142 ORTHO05D009674 4.8e-21 105.1 163 42.3
QL04p069966 Quercus lobata HOM05D008142 ORTHO05D009674 1.8e-20 103.2 156 41.7
CSS0003990 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 1.2e-19 100.5 178 38.8
CSS0017983 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 5.0e-18 95.1 178 37.1
Cfa019469 Carpinus fangiana HOM05D008142 ORTHO05D009674 1.9e-17 93.2 159 40.3
TAR627G0365 Trochodendron aralioides HOM05D008142 ORTHO05D009674 7.2e-17 91.3 159 40.3
Ciclev10022628m.g Citrus clementina HOM05D008142 ORTHO05D009674 1.6e-16 90.1 143 42.0
Hma1.2p1_0280F.1_g112890 Hydrangea macrophylla HOM05D008142 ORTHO05D009674 1.6e-16 90.1 168 38.7
Nn3g20734 Nelumbo nucifera HOM05D008142 ORTHO05D009674 2.8e-16 89.4 175 40.0
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 8.0e-16 87.8 147 40.1
Actinidia35170 Actinidia chinensis HOM05D008142 ORTHO05D009674 1.8e-15 86.7 153 37.9
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 1.8e-15 86.7 159 39.0
RhsimUnG0205300 Rhododendron simsii HOM05D008142 ORTHO05D009674 1.8e-15 86.7 160 38.8
Haze_08481 Corylus avellana HOM05D008142 ORTHO05D009674 3.0e-15 85.9 156 38.5
Nn4g26546 Nelumbo nucifera HOM05D008142 ORTHO05D009674 4.0e-15 85.5 164 38.4
Actinidia18850 Actinidia chinensis HOM05D008142 ORTHO05D009674 5.2e-15 85.1 147 40.1
Oeu001311.1 Olea europaea HOM05D008142 ORTHO05D009674 8.9e-15 84.3 157 38.9
Dinv26679 Davidia involucrata HOM05D008142 ORTHO05D009674 1.5e-14 83.6 132 42.4
FvH4_3g16940 Fragaria vesca HOM05D008142 ORTHO05D009674 2.0e-14 83.2 149 38.9
FAN11G1471 Fragaria x ananassa HOM05D008142 ORTHO05D009674 2.0e-14 83.2 149 38.9
FAN16G2943 Fragaria x ananassa HOM05D008142 ORTHO05D009674 2.6e-14 82.8 149 38.9
Potri.001G379400 Populus trichocarpa HOM05D008142 ORTHO05D009674 2.6e-14 82.8 146 44.5
CSS0032813 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 3.4e-14 82.4 149 44.3
FAN21G3515 Fragaria x ananassa HOM05D008142 ORTHO05D009674 7.5e-14 81.3 149 36.9
Aqoxy1G01717 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 2.2e-13 79.7 168 37.5
Ca_03397_v3 Cicer arietinum L. HOM05D012055 ORTHO05D014183 4.9e-13 78.6 157 34.4
TAR629G2490 Trochodendron aralioides HOM05D008142 ORTHO05D009674 6.3e-13 78.2 161 37.3
RcHm_v2.0_Chr5g0028181 Rosa chinensis HOM05D008142 ORTHO05D009674 2.4e-12 76.3 149 38.3
Oeu020029.1 Olea europaea HOM05D008142 ORTHO05D009674 4.1e-12 75.5 148 37.2
Aqoxy1G01721 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 9.2e-12 74.3 165 37.6
Gohir.D01G033300 Gossypium hirsutum HOM05D023069 ORTHO05D009674 1.6e-11 73.6 146 33.6
Lj3g0014819 Lotus japonicus HOM05D012055 ORTHO05D014183 2.0e-11 73.2 164 32.3
Prupe.4G151600 Prunus persica HOM05D008142 ORTHO05D009674 2.0e-11 73.2 149 34.9
Sabra16G0249900 Salix brachista HOM05D008142 ORTHO05D009674 3.5e-11 72.4 145 39.3
Oeu020030.1 Olea europaea HOM05D008142 ORTHO05D009674 1.0e-10 70.9 147 40.8
Gorai.002G040400 Gossypium raimondii HOM05D023069 ORTHO05D009674 1.3e-10 70.5 146 32.9
Medtr2g071750 Medicago truncatula HOM05D012055 ORTHO05D014183 2.3e-10 69.7 165 32.7
Phvul.005G061600 Phaseolus vulgaris HOM05D012055 ORTHO05D014183 2.3e-10 69.7 146 34.2
Gohir.A01G042700 Gossypium hirsutum HOM05D023069 ORTHO05D009674 2.9e-10 69.3 146 32.2
TAR627G0610 Trochodendron aralioides HOM05D008142 ORTHO05D009674 3.8e-10 68.9 67 50.7
COL.COLO4_17431 Corchorus olitorius HOM05D023069 ORTHO05D009674 5.0e-10 68.6 158 32.9
Thecc.07G144300 Theobroma cacao HOM05D023069 ORTHO05D009674 5.0e-10 68.6 135 38.5
Psat1g009360 Pisum sativum HOM05D012055 ORTHO05D014183 1.5e-09 67.0 137 31.4
Nitab4.5_0004038g0030 Nicotiana tabacum HOM05D026636 ORTHO05D022967 2.5e-09 66.2 139 36.0
Medtr2g071760 Medicago truncatula HOM05D012055 ORTHO05D014183 3.3e-09 65.9 169 32.0
Psat0s1353g0040 Pisum sativum HOM05D012055 ORTHO05D014183 7.3e-09 64.7 138 32.6
MD03G1255500 Malus domestica HOM05D008142 ORTHO05D009674 9.5e-09 64.3 167 33.5
Medtr2g071740 Medicago truncatula HOM05D012055 ORTHO05D014183 9.5e-09 64.3 166 32.5
TPR.G26637 Trifolium pratense HOM05D012055 ORTHO05D014183 9.5e-09 64.3 164 30.5
TAR626G0317 Trochodendron aralioides HOM05D008142 ORTHO05D009674 1.6e-08 63.5 152 34.9
DCAR_021049 Daucus carota HOM05D008142 ORTHO05D009674 2.1e-08 63.2 155 33.5
TPR.G26651 Trifolium pratense HOM05D012055 ORTHO05D014183 3.6e-08 62.4 149 32.2
ECA236G2480 Erigeron canadensis HOM05D002418 ORTHO05D002572 1.0e-07 60.8 174 34.5
Glyma.13G260000 Glycine max HOM05D012055 ORTHO05D014183 1.4e-07 60.5 164 31.1
Glyma.15G248000 Glycine max HOM05D012055 ORTHO05D014183 1.4e-07 60.5 166 31.3
MSTRG.15018 Avicennia marina HOM05D008142 ORTHO05D009674 1.8e-07 60.1 155 34.8
Medtr2g071790 Medicago truncatula HOM05D012055 ORTHO05D014183 1.8e-07 60.1 147 32.7
Cpa.g.sc714.2 Carica papaya HOM05D008142 ORTHO05D009674 2.3e-07 59.7 116 42.2
Nitab4.5_0000923g0030 Nicotiana tabacum HOM05D065472 ORTHO05D022967 3.0e-07 59.3 151 31.8
Prupe.4G151500 Prunus persica HOM05D015893 ORTHO05D019166 4.0e-07 58.9 159 28.3
MSTRG.6725 Avicennia marina HOM05D008142 ORTHO05D009674 6.8e-07 58.2 154 34.4
MBI10_g02220_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 2.0e-06 56.6 135 34.8
SGA_v2.0_scaffold73G24333 Striga asiatica HOM05D008142 ORTHO05D009674 2.0e-06 56.6 156 31.4
DCAR_013786 Daucus carota HOM05D019704 ORTHO05D009674 4.4e-06 55.5 146 34.9
Sabra16G0249800 Salix brachista HOM05D008142 ORTHO05D009674 4.4e-06 55.5 145 34.5
DCAR_017571 Daucus carota HOM05D019704 ORTHO05D009674 7.5e-06 54.7 159 33.3
DCAR_025853 Daucus carota HOM05D019704 ORTHO05D009674 7.5e-06 54.7 159 33.3


User provided reference genes

Program Settings