Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G143400 Theobroma cacao HOM05D001012 ORTHO05D004721 1.4e-50 202.6 99 100.0
Thecc.08G123900 Theobroma cacao HOM05D001012 ORTHO05D004721 1.4e-26 122.9 61 98.4
Duzib093G1741 Durio zibethinus HOM05D001012 ORTHO05D004721 5.0e-24 114.4 61 90.2
Duzib116G0337 Durio zibethinus HOM05D001012 ORTHO05D004721 5.0e-24 114.4 61 91.8
COL.COLO4_35939 Corchorus olitorius HOM05D001012 ORTHO05D004721 4.3e-23 111.3 85 67.1
Gohir.A06G043900 Gossypium hirsutum HOM05D001012 ORTHO05D004721 4.3e-23 111.3 61 86.9
Gohir.D06G044800 Gossypium hirsutum HOM05D001012 ORTHO05D004721 4.3e-23 111.3 61 86.9
Gorai.010G049900 Gossypium raimondii HOM05D001012 ORTHO05D004721 4.3e-23 111.3 61 86.9
Duzib041G0256 Durio zibethinus HOM05D001012 ORTHO05D004721 3.6e-22 108.2 61 85.2
Gohir.A02G073300 Gossypium hirsutum HOM05D001012 ORTHO05D004721 4.1e-18 94.7 67 71.6
Gohir.D02G080600 Gossypium hirsutum HOM05D001012 ORTHO05D004721 4.1e-18 94.7 67 71.6
Gorai.005G090000 Gossypium raimondii HOM05D001012 ORTHO05D004721 4.1e-18 94.7 67 71.6
Dinv07228 Davidia involucrata HOM05D001012 ORTHO05D004721 7.0e-18 94.0 61 75.4
Nn5g28255 Nelumbo nucifera HOM05D001012 ORTHO05D004721 3.5e-17 91.7 58 77.6
TWI56G0260 Tripterygium wilfordii HOM05D001012 ORTHO05D004721 6.0e-17 90.9 62 77.4
Sabra05G0133700 Salix brachista HOM05D001012 ORTHO05D004721 7.8e-17 90.5 60 75.0
Ciclev10002342m.g Citrus clementina HOM05D001012 ORTHO05D004721 1.0e-16 90.1 58 77.6
Manes.18G076400 Manihot esculenta HOM05D001012 ORTHO05D004721 1.0e-16 90.1 60 75.0
CANSAT25G1368 Cannabis sativa HOM05D001012 ORTHO05D004721 1.3e-16 89.7 63 73.0
Prupe.1G499800 Prunus persica HOM05D001012 ORTHO05D004721 1.3e-16 89.7 62 74.2
Dinv27323 Davidia involucrata HOM05D001012 ORTHO05D004721 1.7e-16 89.4 61 73.8
Eucgr.F04356 Eucalyptus grandis HOM05D001012 ORTHO05D004721 2.3e-16 89.0 59 79.7
Potri.002G084600 Populus trichocarpa HOM05D001012 ORTHO05D004721 2.3e-16 89.0 61 77.0
Potri.005G177100 Populus trichocarpa HOM05D001012 ORTHO05D004721 3.0e-16 88.6 59 79.7
Rhsim06G0104500 Rhododendron simsii HOM05D001012 ORTHO05D004721 3.0e-16 88.6 60 78.3
Lj7A339T43 Lonicera japonica HOM05D001012 ORTHO05D004721 3.9e-16 88.2 87 58.6
Lalb_Chr10g0101771 Lupinus albus HOM05D001012 ORTHO05D004721 5.0e-16 87.8 85 54.1
Actinidia02615 Actinidia chinensis HOM05D001012 ORTHO05D004721 6.6e-16 87.4 60 73.3
Lalb_Chr11g0065861 Lupinus albus HOM05D001012 ORTHO05D004721 6.6e-16 87.4 97 51.5
Cfa016009 Carpinus fangiana HOM05D001012 ORTHO05D004721 8.6e-16 87.0 60 75.0
TAR628G0697 Trochodendron aralioides HOM05D001012 ORTHO05D004721 1.1e-15 86.7 59 76.3
Lalb_Chr17g0343781 Lupinus albus HOM05D001012 ORTHO05D004721 1.5e-15 86.3 86 53.5
Psat5g132040 Pisum sativum HOM05D001012 ORTHO05D004721 1.5e-15 86.3 61 67.2
Nn1g08752 Nelumbo nucifera HOM05D001012 ORTHO05D004721 1.9e-15 85.9 62 71.0
Haze_00447 Corylus avellana HOM05D001012 ORTHO05D004721 3.3e-15 85.1 58 75.9
Ca_15190_v3 Cicer arietinum L. HOM05D001012 ORTHO05D004721 5.6e-15 84.3 86 52.3
Glyma.14G148800 Glycine max HOM05D001012 ORTHO05D004721 5.6e-15 84.3 86 54.7
Lj1g0018062 Lotus japonicus HOM05D001012 ORTHO05D004721 5.6e-15 84.3 72 62.5
QL09p035232 Quercus lobata HOM05D001012 ORTHO05D004721 5.6e-15 84.3 60 71.7
Solyc06g060360.3 Solanum lycopersicum HOM05D001012 ORTHO05D004721 5.6e-15 84.3 54 74.1
PGSC0003DMG400017558 Solanum tuberosum HOM05D001012 ORTHO05D004721 5.6e-15 84.3 54 74.1
Atru.chr13.1443 Acer truncatum HOM05D001012 ORTHO05D004721 9.5e-15 83.6 64 68.8
Atru.chr13.1467 Acer truncatum HOM05D001012 ORTHO05D004721 9.5e-15 83.6 64 68.8
VMungo0647G1614 Vigna mungo HOM05D001012 ORTHO05D004721 9.5e-15 83.6 85 55.3
Medtr3g072390 Medicago truncatula HOM05D001012 ORTHO05D004721 1.6e-14 82.8 87 51.7
Sopen06g020500 Solanum pennellii HOM05D001012 ORTHO05D004721 2.1e-14 82.4 51 76.5
TPR.G24051 Trifolium pratense HOM05D001012 ORTHO05D004721 2.1e-14 82.4 87 49.4
MBI09_g45357_MAGBIO Magnolia biondii HOM05D001012 ORTHO05D004721 2.8e-14 82.0 61 65.6
Aqoxy6G00201 Aquilegia oxysepala HOM05D001012 ORTHO05D004721 3.6e-14 81.6 64 64.1
Phvul.008G163500 Phaseolus vulgaris HOM05D001012 ORTHO05D004721 6.2e-14 80.9 85 54.1
Glyma.13G080500 Glycine max HOM05D001012 ORTHO05D004721 8.1e-14 80.5 71 62.0
Phvul.009G124600 Phaseolus vulgaris HOM05D001012 ORTHO05D004721 8.1e-14 80.5 61 65.6
MSTRG.24168 Avicennia marina HOM05D001012 ORTHO05D004721 1.1e-13 80.1 89 53.9
MSTRG.1450 Avicennia marina HOM05D001012 ORTHO05D004721 2.3e-13 79.0 87 55.2
Oeu047948.1 Olea europaea HOM05D001012 ORTHO05D004721 2.3e-13 79.0 63 68.3
Oeu050914.2 Olea europaea HOM05D001012 ORTHO05D004721 2.3e-13 79.0 89 52.8
Lj1g0008844 Lotus japonicus HOM05D001012 ORTHO05D004721 3.1e-13 78.6 55 72.7
TAR376G0631 Trochodendron aralioides HOM05D001012 ORTHO05D004721 3.1e-13 78.6 59 72.9
MSTRG.22411 Avicennia marina HOM05D001012 ORTHO05D004721 4.0e-13 78.2 60 63.3
CiPaw.06G030300 Carya illinoinensis HOM05D001012 ORTHO05D004721 4.0e-13 78.2 59 69.5
DCAR_014091 Daucus carota HOM05D001012 ORTHO05D004721 4.0e-13 78.2 60 70.0
RcHm_v2.0_Chr6g0295651 Rosa chinensis HOM05D001012 ORTHO05D004721 5.2e-13 77.8 62 67.7
AUR62027886 Chenopodium quinoa HOM05D001012 ORTHO05D004721 6.8e-13 77.4 81 49.4
SalBow6G4285 Salvia bowleyana HOM05D001012 ORTHO05D004721 6.8e-13 77.4 51 74.5
SalBow6G5549 Salvia bowleyana HOM05D001012 ORTHO05D004721 6.8e-13 77.4 51 74.5
Peaxi162Scf00051g00088 Petunia axillaris HOM05D001012 ORTHO05D004721 8.9e-13 77.0 62 69.4
Sc01g0001170 Simmondsia chinensis HOM05D001012 ORTHO05D004721 8.9e-13 77.0 93 51.6
arahy.Tifrunner.gnm1.ann1.C03EZ9 Arachis hypogaea HOM05D001012 ORTHO05D004721 1.2e-12 76.6 93 50.5
AUR62019046 Chenopodium quinoa HOM05D001012 ORTHO05D004721 1.5e-12 76.3 81 50.6
DCAR_017422 Daucus carota HOM05D001012 ORTHO05D004721 1.5e-12 76.3 80 51.2
Glyma.04G250100 Glycine max HOM05D001012 ORTHO05D004721 1.5e-12 76.3 93 49.5
PSO170G4789 Papaver somniferum HOM05D001012 ORTHO05D004721 1.5e-12 76.3 57 70.2
PSO528G0066 Papaver somniferum HOM05D001012 ORTHO05D004721 1.5e-12 76.3 57 70.2
arahy.Tifrunner.gnm1.ann1.QHVB9K Arachis hypogaea HOM05D001012 ORTHO05D004721 2.0e-12 75.9 93 49.5
MSTRG.25387 Avicennia marina HOM05D001012 ORTHO05D004721 2.0e-12 75.9 86 51.2
EL10Ac1g01053 Beta vulgaris HOM05D001012 ORTHO05D004721 2.0e-12 75.9 88 50.0
SalBow7G2417 Salvia bowleyana HOM05D001012 ORTHO05D004721 2.0e-12 75.9 52 67.3
VMungo1309G2608 Vigna mungo HOM05D001012 ORTHO05D004721 2.0e-12 75.9 57 64.9
Ah.05g170850 Amaranthus hybridus HOM05D001012 ORTHO05D004721 2.6e-12 75.5 87 52.9
CAN.G1040.12 Capsicum annuum HOM05D001012 ORTHO05D004721 2.6e-12 75.5 50 72.0
CiPaw.05G222700 Carya illinoinensis HOM05D001012 ORTHO05D004721 2.6e-12 75.5 56 73.2
FAN20G2917 Fragaria x ananassa HOM05D001012 ORTHO05D004721 3.4e-12 75.1 59 66.1
FvH4_2g26790 Fragaria vesca HOM05D001012 ORTHO05D004721 4.4e-12 74.7 59 66.1
FAN24G0070 Fragaria x ananassa HOM05D001012 ORTHO05D004721 4.4e-12 74.7 59 66.1
FAN27G2447 Fragaria x ananassa HOM05D001012 ORTHO05D004721 7.5e-12 73.9 90 51.1
FAN15G0423 Fragaria x ananassa HOM05D001012 ORTHO05D004721 1.3e-11 73.2 59 64.4
Migut.C01137 Erythranthe guttata HOM05D001012 ORTHO05D004721 1.7e-11 72.8 68 52.9
CDE02G3226 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 2.2e-11 72.4 61 59.0
Glyma.06G112700 Glycine max HOM05D001012 ORTHO05D004721 2.2e-11 72.4 82 52.4
ClCG11G015690 Citrullus lanatus HOM05D001012 ORTHO05D004721 2.9e-11 72.0 60 61.7
Hund27022 Selenicereus undatus HOM05D001012 ORTHO05D004721 2.9e-11 72.0 65 55.4
Cpa.g.sc36.57 Carica papaya HOM05D001012 ORTHO05D004721 3.7e-11 71.6 50 72.0
CDE08G0101 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 3.7e-11 71.6 70 55.7
unitig_0.g2118 Utricularia gibba HOM05D001012 ORTHO05D004721 3.7e-11 71.6 74 55.4
unitig_747.g21492 Utricularia gibba HOM05D001012 ORTHO05D004721 3.7e-11 71.6 72 55.6
PGR044G1962 Punica granatum HOM05D001012 ORTHO05D004721 4.9e-11 71.2 61 60.7
BcaC08g42862 Brassica carinata HOM05D001012 ORTHO05D004721 8.3e-11 70.5 61 60.7
C06p00720 Brassica napus HOM05D001012 ORTHO05D004721 8.3e-11 70.5 61 60.7
BolC6t35213H Brassica oleracea HOM05D001012 ORTHO05D004721 8.3e-11 70.5 61 60.7
Lsat_1_v5_gn_1_9861 Lactuca sativa HOM05D001012 ORTHO05D004721 8.3e-11 70.5 65 61.5
SGA_v2.0_scaffold28G12002 Striga asiatica HOM05D001012 ORTHO05D004721 8.3e-11 70.5 56 62.5
BcaC07g37287 Brassica carinata HOM05D001012 ORTHO05D004721 1.1e-10 70.1 62 59.7
A08p06350 Brassica napus HOM05D001012 ORTHO05D004721 1.1e-10 70.1 62 59.7
C08p07180 Brassica napus HOM05D001012 ORTHO05D004721 1.1e-10 70.1 62 59.7
BolC8t47562H Brassica oleracea HOM05D001012 ORTHO05D004721 1.1e-10 70.1 62 59.7
BraA08t32643Z Brassica rapa HOM05D001012 ORTHO05D004721 1.1e-10 70.1 62 59.7
CDE06G0137 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 1.1e-10 70.1 73 56.2
THA.LOC104817291 Tarenaya hassleriana HOM05D001012 ORTHO05D004721 1.1e-10 70.1 90 47.8
AT1G44760 Arabidopsis thaliana HOM05D001012 ORTHO05D004721 1.4e-10 69.7 61 60.7
MELO3C010473.2 Cucumis melo HOM05D001012 ORTHO05D004721 2.4e-10 68.9 62 58.1
CsaV3_4G028320 Cucumis sativus L. HOM05D001012 ORTHO05D004721 2.4e-10 68.9 62 58.1
Aa31LG6G9310 Aethionema arabicum HOM05D001012 ORTHO05D004721 3.2e-10 68.6 60 55.0
AL1G52420 Arabidopsis lyrata HOM05D001012 ORTHO05D004721 3.2e-10 68.6 61 59.0
Carub.0001s3528 Capsella rubella HOM05D001012 ORTHO05D004721 3.2e-10 68.6 61 59.0
ClCG08G005620 Citrullus lanatus HOM05D001012 ORTHO05D004721 3.2e-10 68.6 55 69.1
Sp1g33620 Schrenkiella parvula HOM05D001012 ORTHO05D004721 3.2e-10 68.6 58 63.8
Sed0010314 Sechium edule HOM05D001012 ORTHO05D004721 3.2e-10 68.6 60 60.0
Manes.02G162500 Manihot esculenta HOM05D001012 ORTHO05D004721 4.1e-10 68.2 55 65.5
Zm00001eb288570 Zea mays HOM05D001012 ORTHO05D004721 4.1e-10 68.2 40 82.5
A10p07390 Brassica napus HOM05D001012 ORTHO05D004721 5.4e-10 67.8 72 54.2
BraSC36t46067Z Brassica rapa HOM05D001012 ORTHO05D004721 5.4e-10 67.8 72 54.2
CARHR036010 Cardamine hirsuta HOM05D001012 ORTHO05D004721 5.4e-10 67.8 61 57.4
Sed0016510 Sechium edule HOM05D001012 ORTHO05D004721 5.4e-10 67.8 54 63.0
BcaB07g33932 Brassica carinata HOM05D001012 ORTHO05D004721 7.1e-10 67.4 61 59.0
Hma1.2p1_0186F.1_g081740 Hydrangea macrophylla HOM05D001012 ORTHO05D004721 1.6e-09 66.2 61 60.7
Lj4A623T14 Lonicera japonica HOM05D001012 ORTHO05D004721 1.6e-09 66.2 40 77.5
CDE08G0999 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 2.1e-09 65.9 45 66.7
CsaV3_6G034520 Cucumis sativus L. HOM05D001012 ORTHO05D004721 2.1e-09 65.9 51 66.7
MELO3C010604.2 Cucumis melo HOM05D001012 ORTHO05D004721 2.7e-09 65.5 50 68.0
Thhalv10011770m.g Eutrema salsugineum HOM05D001012 ORTHO05D004721 4.6e-09 64.7 61 55.7
Os05g0428400 Oryza sativa ssp. japonica HOM05D001012 ORTHO05D004721 4.6e-09 64.7 38 84.2
BcaB04g17586 Brassica carinata HOM05D001012 ORTHO05D004721 6.0e-09 64.3 57 63.2
SGA_v2.0_scaffold52G18973 Striga asiatica HOM05D001012 ORTHO05D004721 1.0e-08 63.5 52 59.6
ATR1134G024 Amborella trichopoda HOM05D001012 ORTHO05D004721 2.3e-08 62.4 46 60.9
MD15G1350900 Malus domestica HOM05D001012 ORTHO05D004721 2.3e-08 62.4 89 44.9
HanXRQChr04g0125221 Helianthus annuus HOM05D001012 ORTHO05D004721 3.9e-08 61.6 37 78.4
HanXRQChr10g0313231 Helianthus annuus HOM05D001012 ORTHO05D004721 3.9e-08 61.6 37 78.4
Lalb_Chr04g0253411 Lupinus albus HOM05D001012 ORTHO05D004721 3.9e-08 61.6 75 46.7
unitig_46.g18126 Utricularia gibba HOM05D001012 ORTHO05D004721 5.1e-08 61.2 49 57.1
CSS0029014 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D004721 8.6e-08 60.5 63 57.1
Zm00001eb146130 Zea mays HOM05D001012 ORTHO05D004721 1.1e-07 60.1 67 50.7
Nitab4.5_0000633g0210 Nicotiana tabacum HOM05D001012 ORTHO05D004721 1.5e-07 59.7 37 73.0
Nitab4.5_0004882g0010 Nicotiana tabacum HOM05D001012 ORTHO05D004721 1.5e-07 59.7 37 73.0
HPP92_011932 Vanilla planifolia HOM05D001012 ORTHO05D004721 2.5e-07 58.9 75 46.7
HPP92_025161 Vanilla planifolia HOM05D001012 ORTHO05D004721 3.3e-07 58.5 38 76.3
Hma1.2p1_0428F.1_g151030 Hydrangea macrophylla HOM05D001012 ORTHO05D002597 1.2e-06 56.6 51 51.0
Migut.N03286 Erythranthe guttata HOM05D001012 ORTHO05D004721 1.6e-06 56.2 65 49.2
FAN15G3370 Fragaria x ananassa HOM05D001012 ORTHO05D004721 1.6e-06 56.2 33 75.8
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 1.6e-06 56.2 51 47.1
vmacro12535 Vaccinium macrocarpon HOM05D001012 ORTHO05D004721 1.6e-06 56.2 35 80.0
Oeu048130.1 Olea europaea HOM05D001012 ORTHO05D002597 2.1e-06 55.8 53 43.4
Zm00001eb348850 Zea mays HOM05D001012 ORTHO05D004721 2.8e-06 55.5 36 72.2
SMO367G0084 Selaginella moellendorffii HOM05D001012 ORTHO05D004721 3.6e-06 55.1 45 57.8
Dinv20144 Davidia involucrata HOM05D001012 ORTHO05D002597 8.1e-06 53.9 58 43.1
HPP92_013747 Vanilla planifolia HOM05D001012 ORTHO05D004721 8.1e-06 53.9 80 42.5


User provided reference genes

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