Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 8.5e-144 513.8 295 100.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.0e-125 453.8 295 89.2
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 9.8e-124 447.2 304 84.9
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 9.8e-124 447.2 304 81.2
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 2.8e-123 445.7 304 84.5
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.0e-121 439.5 305 84.3
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 2.0e-121 439.5 294 85.7
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.8e-120 435.3 304 81.9
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-119 433.3 304 82.2
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.9e-119 433.0 305 83.6
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.5e-119 432.6 294 84.4
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.8e-118 429.1 295 73.9
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 6.1e-118 427.9 300 83.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.2e-116 423.7 305 80.3
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.0e-116 422.9 296 79.1
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 2.6e-116 422.5 306 69.6
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 7.5e-116 421.0 305 79.7
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 9.8e-116 420.6 305 74.8
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.3e-115 420.2 307 81.8
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.3e-115 420.2 296 72.0
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 4.9e-115 418.3 295 80.0
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 4.9e-115 418.3 306 82.0
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.1e-114 417.2 304 81.6
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.4e-114 416.8 304 80.9
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.1e-114 415.6 296 70.9
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 7.0e-114 414.5 306 77.5
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 2.7e-113 412.5 305 68.9
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.3e-112 410.2 306 76.8
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.3e-112 410.2 314 69.1
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 2.9e-112 409.1 305 76.7
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.9e-112 409.1 305 68.5
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.5e-111 406.8 320 72.8
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.5e-111 406.8 305 80.3
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.5e-111 406.8 305 77.7
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.5e-111 406.8 310 78.7
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.5e-111 406.8 306 80.7
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.5e-111 406.0 312 78.5
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.5e-111 406.0 296 71.6
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 7.3e-111 404.4 301 81.7
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 2.8e-110 402.5 307 69.4
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 4.7e-110 401.7 300 68.3
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 6.1e-110 401.4 307 69.1
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 6.1e-110 401.4 299 69.6
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.3e-109 399.4 304 79.6
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 8.9e-109 397.5 307 68.7
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 8.9e-109 397.5 306 68.3
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.5e-108 396.7 297 78.5
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.0e-108 396.4 305 76.7
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.6e-108 396.0 307 68.7
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 3.4e-108 395.6 307 68.7
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 4.4e-108 395.2 311 77.8
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 4.4e-108 395.2 295 76.3
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.4e-106 390.2 308 69.5
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.4e-106 390.2 313 66.8
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.4e-106 389.4 307 72.6
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.4e-106 389.4 304 75.0
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 2.0e-105 386.3 307 75.6
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 4.6e-105 385.2 296 66.2
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 3.0e-104 382.5 309 67.6
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 6.6e-104 381.3 307 75.9
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 8.6e-104 380.9 305 74.1
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.1e-103 380.6 309 71.2
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.1e-103 380.6 309 64.4
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.5e-103 379.4 308 64.3
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 3.3e-103 379.0 309 64.4
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 3.3e-103 379.0 315 73.7
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 4.3e-103 378.6 338 70.7
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 2.1e-102 376.3 307 73.9
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 2.3e-101 372.9 319 69.0
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 2.0e-100 369.8 320 69.7
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 2.6e-100 369.4 308 62.3
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.7e-99 366.7 307 73.9
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 4.9e-99 365.2 311 73.0
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.4e-98 362.8 309 60.8
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 2.4e-98 362.8 283 76.3
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.2e-98 362.5 311 69.5
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.2e-97 360.5 295 76.3
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 7.8e-97 357.8 321 71.0
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 1.0e-96 357.5 306 66.0
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-95 354.0 356 60.1
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-95 354.0 356 60.1
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.5e-95 353.6 295 73.9
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 7.3e-95 351.3 283 78.4
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 3.6e-94 349.0 340 57.9
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.1e-93 347.4 296 60.8
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.4e-93 347.1 295 73.9
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 5.2e-93 345.1 280 77.1
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 2.0e-92 343.2 305 62.3
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.6e-92 342.8 264 79.2
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 4.4e-92 342.0 288 75.3
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 8.3e-91 337.8 318 67.3
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.4e-90 337.0 262 78.6
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 4.1e-90 335.5 274 75.9
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.1e-90 335.5 318 67.0
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 4.6e-89 332.0 350 60.6
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 4.6e-89 332.0 350 60.6
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 2.8e-86 322.8 321 63.2
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 4.7e-86 322.0 309 57.6
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.4e-85 320.5 312 67.3
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.8e-85 320.1 306 56.2
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.8e-85 318.2 284 72.9
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 7.6e-84 314.7 338 52.7
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.3e-83 313.9 258 64.7
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.2e-83 313.2 256 78.1
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 8.4e-83 311.2 256 77.7
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 9.2e-82 307.8 242 81.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.6e-81 307.0 232 69.8
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.0e-80 304.3 215 83.3
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 3.9e-80 302.4 215 83.7
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.4e-77 293.1 271 59.4
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.2e-75 286.6 264 60.6
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 6.0e-73 278.5 296 53.4
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.3e-72 277.3 232 65.1
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 4.3e-71 272.3 219 79.5
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 9.6e-71 271.2 195 87.7
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 7.6e-68 261.5 231 74.0
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 4.9e-67 258.8 231 73.6
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 6.0e-65 251.9 250 56.8
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 6.0e-65 251.9 233 73.8
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 5.6e-63 245.4 238 57.6
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 5.6e-63 245.4 245 69.8
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 9.6e-63 244.6 241 73.0
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.2e-60 237.7 231 69.7
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 3.4e-60 236.1 129 86.8
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.4e-58 230.7 233 70.4
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 5.5e-58 228.8 224 56.2
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 5.5e-58 228.8 224 56.2
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 1.2e-57 227.6 297 49.2
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 3.9e-56 222.6 234 71.4
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 3.3e-55 219.5 242 52.5
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 4.5e-52 209.1 233 61.8
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 2.3e-48 196.8 295 42.7
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.9e-48 196.1 277 44.8
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.5e-47 193.4 244 61.9
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 9.0e-45 184.9 154 81.2
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.2e-44 184.5 282 52.1
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.8e-43 179.5 314 45.9
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-42 177.6 145 78.6
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 3.2e-42 176.4 186 52.2
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.1e-37 161.4 146 77.4
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 2.6e-36 156.8 161 56.5
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.9e-36 155.6 74 93.2
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 2.2e-35 153.7 117 60.7
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 2.0e-31 140.6 244 40.2
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 2.4e-29 133.7 82 74.4
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 4.5e-28 129.4 73 82.2
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.4e-24 117.9 167 44.3
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.3e-24 117.1 85 68.2
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.1e-21 108.2 59 78.0
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 8.5e-19 98.6 91 54.9
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 1.6e-17 94.4 132 35.6
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 8.0e-17 92.0 50 76.0
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.4e-16 91.3 141 40.4
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 2.6e-15 87.0 78 65.4
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 3.2e-10 70.1 92 44.6
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.0e-08 65.1 47 70.2
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 1.0e-08 65.1 100 40.0
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 3.0e-08 63.5 101 45.5


User provided reference genes

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