Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-78 296.6 147 100.0
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-59 233.4 132 88.6
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 2.1e-58 229.2 145 80.7
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 3.6e-50 201.8 145 72.4
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 3.6e-42 175.3 145 64.8
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.0e-41 173.7 145 64.8
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 2.0e-32 142.9 85 84.7
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 4.1e-30 135.2 99 72.7
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 1.7e-28 129.8 142 55.6
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 3.8e-28 128.6 136 58.8
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 3.8e-28 128.6 138 50.0
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 8.5e-28 127.5 138 49.3
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.5e-27 125.9 148 52.0
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.5e-27 125.9 141 48.2
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 6.1e-26 121.3 151 51.0
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 6.1e-26 121.3 146 50.7
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.4e-25 120.2 148 50.0
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 1.8e-25 119.8 148 50.0
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.3e-25 119.4 141 48.2
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 4.0e-25 118.6 144 52.1
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 4.0e-25 118.6 133 53.4
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.2e-24 117.1 145 51.7
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 1.5e-24 116.7 156 50.0
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.0e-24 116.3 148 50.0
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 7.5e-24 114.4 108 57.4
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 7.5e-24 114.4 85 69.4
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 7.5e-24 114.4 144 50.7
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.3e-23 113.6 136 52.2
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.7e-23 113.2 150 48.7
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.7e-23 113.2 85 67.1
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 2.8e-23 112.5 85 68.2
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.8e-23 112.5 117 53.0
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.7e-23 112.1 152 48.0
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.3e-23 111.3 152 48.0
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 6.3e-23 111.3 72 77.8
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 8.3e-23 110.9 132 50.0
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.1e-22 110.5 123 52.8
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.4e-22 110.2 142 51.4
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.8e-22 109.8 117 53.8
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.8e-22 109.8 87 65.5
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 2.4e-22 109.4 88 64.8
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 3.1e-22 109.0 137 51.1
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.1e-22 109.0 85 64.7
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 3.1e-22 109.0 155 46.5
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 5.4e-22 108.2 114 52.6
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 7.0e-22 107.8 141 46.1
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.2e-21 107.1 85 62.4
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 1.2e-21 107.1 125 48.8
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.2e-21 107.1 139 48.2
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 1.2e-21 107.1 85 62.4
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.6e-21 106.7 108 51.9
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.6e-21 106.7 143 48.3
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 2.0e-21 106.3 127 48.8
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 2.7e-21 105.9 108 56.5
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 2.7e-21 105.9 91 58.2
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 3.5e-21 105.5 141 46.8
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 3.5e-21 105.5 83 62.7
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 7.7e-21 104.4 133 47.4
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 7.7e-21 104.4 124 54.0
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.0e-20 104.0 132 52.3
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.0e-20 104.0 120 54.2
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 1.7e-20 103.2 119 48.7
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.7e-20 103.2 85 60.0
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 1.7e-20 103.2 112 52.7
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 1.7e-20 103.2 85 61.2
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 2.3e-20 102.8 85 60.0
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 2.3e-20 102.8 81 64.2
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 5.0e-20 101.7 133 49.6
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 5.0e-20 101.7 150 44.7
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 6.6e-20 101.3 149 42.3
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 6.6e-20 101.3 138 46.4
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 8.6e-20 100.9 85 58.8
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 8.6e-20 100.9 85 60.0
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 8.6e-20 100.9 85 60.0
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 8.6e-20 100.9 85 58.8
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 8.6e-20 100.9 85 58.8
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.1e-19 100.5 85 58.8
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.1e-19 100.5 85 58.8
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.1e-19 100.5 120 50.0
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.5e-19 100.1 71 73.2
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.9e-19 99.8 85 58.8
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.9e-19 99.8 85 62.4
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.5e-19 99.4 73 69.9
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 2.5e-19 99.4 106 53.8
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 3.3e-19 99.0 145 42.8
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 3.3e-19 99.0 71 71.8
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 4.2e-19 98.6 85 56.5
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 4.2e-19 98.6 79 64.6
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 4.2e-19 98.6 83 60.2
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 5.5e-19 98.2 135 50.4
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 7.2e-19 97.8 124 49.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 9.5e-19 97.4 123 48.0
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.2e-18 97.1 83 59.0
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.2e-18 97.1 121 50.4
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 1.6e-18 96.7 85 57.6
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 2.1e-18 96.3 141 46.8
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.8e-18 95.9 85 55.3
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 2.8e-18 95.9 90 52.2
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 4.7e-18 95.1 144 45.1
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 4.7e-18 95.1 85 55.3
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 6.1e-18 94.7 121 51.2
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 8.0e-18 94.4 134 46.3
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 1.4e-17 93.6 67 67.2
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 1.8e-17 93.2 99 52.5
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.8e-17 93.2 91 51.6
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.0e-17 92.4 81 56.8
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 4.0e-17 92.0 80 56.2
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 1.2e-16 90.5 65 70.8
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 1.5e-16 90.1 78 57.7
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.5e-16 90.1 73 64.4
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.6e-16 89.4 78 56.4
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 3.4e-16 89.0 77 58.4
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 3.4e-16 89.0 77 58.4
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 5.7e-16 88.2 81 53.1
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 6.3e-15 84.7 64 68.8
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.4e-14 82.8 139 42.4
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 7.0e-14 81.3 71 60.6
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 1.0e-12 77.4 85 41.2
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.7e-12 76.6 76 50.0
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 2.3e-12 76.3 72 51.4
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 1.5e-11 73.6 67 55.2
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 3.1e-09 65.9 52 57.7
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 8.9e-09 64.3 83 38.6
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 2.2e-07 59.7 72 43.1
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 6.4e-07 58.2 73 39.7


User provided reference genes

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