Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G129500 Theobroma cacao HOM05D002630 ORTHO05D000952 3.2e-68 261.5 125 100.0
Thecc.10G139400 Theobroma cacao HOM05D002630 ORTHO05D000952 4.1e-23 111.7 76 72.4
Thecc.04G138600 Theobroma cacao HOM05D000006 ORTHO05D000001 1.8e-18 96.3 68 64.7
Thecc.10G134900 Theobroma cacao HOM05D002630 ORTHO05D000952 3.1e-18 95.5 54 75.9
Thecc.10G133400 Theobroma cacao HOM05D002630 ORTHO05D000952 8.9e-18 94.0 54 75.9
Thecc.10G132400 Theobroma cacao HOM05D002630 ORTHO05D000952 7.5e-17 90.9 49 79.6
Duzib212G0395 Durio zibethinus HOM05D000002 ORTHO05D000001 1.5e-12 76.6 111 36.9
Duzib041G0290 Durio zibethinus HOM05D000002 ORTHO05D000001 1.6e-11 73.2 99 37.4
Duzib170G0347 Durio zibethinus HOM05D000002 ORTHO05D000001 2.1e-11 72.8 71 45.1
Duzib170G0368 Durio zibethinus HOM05D000002 ORTHO05D000001 3.6e-11 72.0 99 36.4
Duzib084G1319 Durio zibethinus HOM05D000002 ORTHO05D000001 6.2e-11 71.2 99 36.4
Duzib128G0886 Durio zibethinus HOM05D000002 ORTHO05D000001 6.2e-11 71.2 71 43.7
Duzib213G0091 Durio zibethinus HOM05D000002 ORTHO05D000001 8.1e-11 70.9 99 34.3
Prupe.4G246100 Prunus persica HOM05D002630 ORTHO05D000952 4.4e-09 65.1 51 54.9
Prupe.I005300 Prunus persica HOM05D002630 ORTHO05D000952 4.4e-09 65.1 51 54.9
Sopen01g009970 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-09 63.9 113 36.3
Ciclev10013622m.g Citrus clementina HOM05D002630 ORTHO05D000952 1.3e-08 63.5 54 51.9
Prupe.3G111400 Prunus persica HOM05D002630 ORTHO05D000952 1.3e-08 63.5 54 48.1
Sopen11g015510 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-08 63.5 92 41.3
Gorai.011G263500 Gossypium raimondii HOM05D000092 ORTHO05D000042 2.2e-08 62.8 58 46.6
FvH4_6g26330 Fragaria vesca HOM05D011155 ORTHO05D000952 2.9e-08 62.4 52 46.2
FAN09G1889 Fragaria x ananassa HOM05D011155 ORTHO05D000952 2.9e-08 62.4 52 46.2
Sopen01g025280 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-08 62.4 105 38.1
FAN02G3382 Fragaria x ananassa HOM05D011155 ORTHO05D000952 3.7e-08 62.0 52 46.2
Prupe.3G065000 Prunus persica HOM05D002630 ORTHO05D000952 3.7e-08 62.0 41 58.5
Ciclev10013626m.g Citrus clementina HOM05D002630 ORTHO05D000952 4.9e-08 61.6 40 60.0
Ciclev10013730m.g Citrus clementina HOM05D002630 ORTHO05D000952 4.9e-08 61.6 40 60.0
Prupe.4G230900 Prunus persica HOM05D002630 ORTHO05D000952 4.9e-08 61.6 51 52.9
Prupe.4G231000 Prunus persica HOM05D002630 ORTHO05D000952 4.9e-08 61.6 51 52.9
Sopen05g020560 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-08 61.6 114 35.1
Ciclev10026981m.g Citrus clementina HOM05D002630 ORTHO05D000952 6.4e-08 61.2 36 66.7
COL.COLO4_18802 Corchorus olitorius HOM05D002630 ORTHO05D000952 6.4e-08 61.2 41 61.0
Manes.10G049666 Manihot esculenta HOM05D000002 ORTHO05D000001 6.4e-08 61.2 66 40.9
Sopen02g005350 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-08 61.2 115 37.4
Gorai.005G117400 Gossypium raimondii HOM05D000002 ORTHO05D000001 8.3e-08 60.8 66 37.9
Lj5g0002813 Lotus japonicus HOM05D002630 ORTHO05D000952 8.3e-08 60.8 44 56.8
Lj5g0010861 Lotus japonicus HOM05D002630 ORTHO05D000952 8.3e-08 60.8 43 58.1
Atru.chr2.3414 Acer truncatum HOM05D000002 ORTHO05D000001 1.1e-07 60.5 66 45.5
Ciclev10013691m.g Citrus clementina HOM05D002630 ORTHO05D000952 1.4e-07 60.1 54 50.0
Ciclev10013879m.g Citrus clementina HOM05D002630 ORTHO05D000952 1.4e-07 60.1 54 50.0
COL.COLO4_33115 Corchorus olitorius HOM05D002630 ORTHO05D000952 2.4e-07 59.3 69 39.1
FvH4_3g18930 Fragaria vesca HOM05D002630 ORTHO05D000952 2.4e-07 59.3 57 47.4
FAN11G3152 Fragaria x ananassa HOM05D002630 ORTHO05D000952 2.4e-07 59.3 57 47.4
RcHm_v2.0_Chr3g0452871 Rosa chinensis HOM05D028547 ORTHO05D000952 2.4e-07 59.3 38 63.2
Sopen10g013730 Solanum pennellii HOM05D000006 ORTHO05D000001 2.4e-07 59.3 92 40.2
Thecc.05G264300 Theobroma cacao HOM05D000002 ORTHO05D000001 2.4e-07 59.3 66 37.9
Atru.chr5.431 Acer truncatum HOM05D002630 ORTHO05D000952 4.1e-07 58.5 43 53.5
Atru.chr8.1837 Acer truncatum HOM05D002630 ORTHO05D000952 4.1e-07 58.5 43 51.2
RcHm_v2.0_Chr7g0230611 Rosa chinensis HOM05D010397 ORTHO05D000952 4.1e-07 58.5 40 62.5
RcHm_v2.0_Chr7g0236441 Rosa chinensis HOM05D010397 ORTHO05D000952 4.1e-07 58.5 40 62.5
RcHm_v2.0_Chr7g0236511 Rosa chinensis HOM05D010397 ORTHO05D000952 4.1e-07 58.5 40 62.5
Sopen04g014730 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-07 58.5 67 47.8
Atru.chr5.426 Acer truncatum HOM05D002630 ORTHO05D000952 5.4e-07 58.2 43 53.5
Ciclev10023292m.g Citrus clementina HOM05D002630 ORTHO05D000952 5.4e-07 58.2 40 55.0
CsaV3_3G042700 Cucumis sativus L. HOM05D002630 ORTHO05D000952 5.4e-07 58.2 43 60.5
Sopen08g020550 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-07 58.2 115 36.5
Cfa010188 Carpinus fangiana HOM05D002630 ORTHO05D000952 7.1e-07 57.8 51 51.0
Haze_23576 Corylus avellana HOM05D002630 ORTHO05D000952 7.1e-07 57.8 51 51.0
Atru.chr5.447 Acer truncatum HOM05D002630 ORTHO05D000952 9.2e-07 57.4 38 57.9
Thecc.10G160200 Theobroma cacao HOM05D000002 ORTHO05D000001 9.2e-07 57.4 66 34.8
CsaV3_1G044320 Cucumis sativus L. HOM05D002630 ORTHO05D000952 1.2e-06 57.0 43 58.1
CsaV3_4G025380 Cucumis sativus L. HOM05D002630 ORTHO05D000952 1.2e-06 57.0 43 58.1
Atru.chr4.412 Acer truncatum HOM05D000002 ORTHO05D000001 1.6e-06 56.6 55 43.6
Atru.chr5.457 Acer truncatum HOM05D001542 ORTHO05D000952 1.6e-06 56.6 43 51.2
FAN05G1528 Fragaria x ananassa HOM05D011155 ORTHO05D000952 1.6e-06 56.6 52 42.3
FAN25G2891 Fragaria x ananassa HOM05D002630 ORTHO05D000952 1.6e-06 56.6 57 45.6
FvH4_5g35290 Fragaria vesca HOM05D010397 ORTHO05D000952 2.1e-06 56.2 38 63.2
FAN18G2210 Fragaria x ananassa HOM05D010397 ORTHO05D000952 2.1e-06 56.2 38 63.2
FAN21G0085 Fragaria x ananassa HOM05D002630 ORTHO05D000952 2.1e-06 56.2 57 45.6
QL05p044180 Quercus lobata HOM05D002630 ORTHO05D000952 2.1e-06 56.2 53 52.8
RcHm_v2.0_Chr3g0454621 Rosa chinensis HOM05D002630 ORTHO05D000952 2.1e-06 56.2 35 60.0
Atru.chr12.1167 Acer truncatum HOM05D002630 ORTHO05D000952 2.7e-06 55.8 43 48.8
FAN13G0202 Fragaria x ananassa HOM05D010397 ORTHO05D025418 3.5e-06 55.5 52 51.9
FAN21G1107 Fragaria x ananassa HOM05D002630 ORTHO05D000952 3.5e-06 55.5 57 45.6
RcHm_v2.0_Chr2g0126751 Rosa chinensis HOM05D002630 ORTHO05D000952 3.5e-06 55.5 39 59.0
Sopen09g018460 Solanum pennellii HOM05D000006 ORTHO05D000001 3.5e-06 55.5 63 38.1
MELO3C027409.2 Cucumis melo HOM05D002630 ORTHO05D000952 6.0e-06 54.7 43 58.1
FAN11G3586 Fragaria x ananassa HOM05D002630 ORTHO05D000952 6.0e-06 54.7 57 43.9
Sopen04g014610 Solanum pennellii HOM05D000002 ORTHO05D000001 6.0e-06 54.7 72 45.8
Sopen11g017730 Solanum pennellii HOM05D000006 ORTHO05D000001 6.0e-06 54.7 92 39.1
Atru.chr10.209 Acer truncatum HOM05D000002 ORTHO05D000001 7.8e-06 54.3 66 39.4
FvH4_7g06570 Fragaria vesca HOM05D008426 ORTHO05D000952 7.8e-06 54.3 34 61.8
FAN03G0629 Fragaria x ananassa HOM05D008426 ORTHO05D000952 7.8e-06 54.3 34 61.8
FAN09G4779 Fragaria x ananassa HOM05D003164 ORTHO05D003575 7.8e-06 54.3 55 43.6
FAN10G4302 Fragaria x ananassa HOM05D008426 ORTHO05D000952 7.8e-06 54.3 34 61.8
GSVIVG01000436001 Vitis vinifera HOM05D000002 ORTHO05D000001 7.8e-06 54.3 66 40.9


User provided reference genes

Program Settings