Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 2.4e-44 181.8 94 100.0
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.5e-25 119.4 96 67.7
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.3e-25 118.2 96 67.7
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 3.3e-25 118.2 96 67.7
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 5.5e-20 100.9 94 58.5
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 1.8e-18 95.9 94 55.3
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 2.3e-18 95.5 94 58.5
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 1.1e-17 93.2 91 56.0
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 1.5e-17 92.8 93 51.6
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 8.2e-16 87.0 94 52.1
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.8e-15 85.9 95 53.7
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.4e-15 85.5 95 53.7
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.9e-13 78.6 91 49.5
Gohir.A01G049800 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.5e-13 77.4 97 50.5
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 6.5e-13 77.4 96 45.8
Thecc.07G128000 Theobroma cacao HOM05D008890 ORTHO05D004248 6.5e-13 77.4 95 50.5
Gorai.002G049900 Gossypium raimondii HOM05D008890 ORTHO05D004248 1.1e-12 76.6 97 50.5
Gorai.002G049800 Gossypium raimondii HOM05D008890 ORTHO05D004248 1.4e-12 76.3 97 50.5
Gohir.D01G040250 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.9e-12 75.9 97 49.5
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.5e-12 75.5 79 50.6
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.5e-12 75.5 95 52.6
Gohir.A01G049700 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.2e-12 74.7 97 50.5
COL.COLO4_17492 Corchorus olitorius HOM05D008890 ORTHO05D004248 5.5e-12 74.3 99 48.5
Gohir.A01G049500 Gossypium hirsutum HOM05D008890 ORTHO05D004248 7.2e-12 73.9 97 48.5
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 9.4e-12 73.6 99 47.5
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 9.4e-12 73.6 97 48.5
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 9.4e-12 73.6 97 48.5
COL.COLO4_17491 Corchorus olitorius HOM05D008890 ORTHO05D004248 1.2e-11 73.2 95 46.3
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.2e-11 73.2 98 44.9
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.6e-11 72.8 96 50.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.6e-11 72.8 99 48.5
Gohir.A01G049600 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.7e-11 72.0 97 48.5
Gohir.D01G040300 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.6e-11 71.6 96 47.9
Gorai.002G050000 Gossypium raimondii HOM05D008890 ORTHO05D004248 3.6e-11 71.6 96 47.9
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 6.1e-11 70.9 98 43.9
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 6.1e-11 70.9 98 43.9
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.8e-10 69.3 97 46.4
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.3e-10 68.9 91 45.1
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 2.3e-10 68.9 93 43.0
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.0e-10 68.6 94 43.6
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 3.9e-10 68.2 97 43.3
Lsat_1_v5_gn_7_102321 Lactuca sativa HOM05D005059 ORTHO05D004248 3.9e-10 68.2 94 47.9
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 5.1e-10 67.8 95 40.0
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.1e-09 66.6 100 46.0
Gohir.D01G039700 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.0e-09 65.9 96 45.8
Gorai.002G049200 Gossypium raimondii HOM05D008890 ORTHO05D004248 2.0e-09 65.9 96 45.8
Gohir.D01G039900 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.5e-09 65.5 96 44.8
Gorai.002G049500 Gossypium raimondii HOM05D008890 ORTHO05D004248 2.5e-09 65.5 96 44.8
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 2.5e-09 65.5 103 43.7
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 3.3e-09 65.1 95 45.3
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 4.3e-09 64.7 73 47.9
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 5.7e-09 64.3 97 40.2
Lsat_1_v5_gn_7_102441 Lactuca sativa HOM05D005059 ORTHO05D004248 5.7e-09 64.3 94 47.9
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 5.7e-09 64.3 107 42.1
Gohir.A01G049100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 7.4e-09 63.9 94 42.6
Potri.011G108101 Populus trichocarpa HOM05D008890 ORTHO05D004248 7.4e-09 63.9 94 44.7
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 9.7e-09 63.5 86 46.5
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.7e-08 62.8 74 47.3
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.2e-08 62.4 94 40.4
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.8e-08 62.0 94 40.4
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.8e-08 62.0 96 36.5
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 3.7e-08 61.6 93 39.8
Atru.chr2.2097 Acer truncatum HOM05D008890 ORTHO05D004248 6.3e-08 60.8 95 40.0
Potri.001G393101 Populus trichocarpa HOM05D008890 ORTHO05D004248 6.3e-08 60.8 94 42.6
Gohir.A01G049300 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.2e-08 60.5 96 45.8
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.2e-08 60.5 99 42.4
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 8.2e-08 60.5 86 45.3
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.1e-07 60.1 94 38.3
Lsat_1_v5_gn_7_102341 Lactuca sativa HOM05D005059 ORTHO05D004248 1.1e-07 60.1 94 44.7
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.1e-07 60.1 97 40.2
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.4e-07 59.7 97 40.2
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.4e-07 59.7 99 42.4
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 1.4e-07 59.7 105 41.0
Atru.chr2.2076 Acer truncatum HOM05D022481 ORTHO05D023186 1.8e-07 59.3 98 40.8
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.8e-07 59.3 98 39.8
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 2.4e-07 58.9 82 43.9
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 3.1e-07 58.5 94 41.5
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 6.9e-07 57.4 102 35.3
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.2e-06 56.6 95 36.8
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.5e-06 56.2 99 40.4
Atru.chr2.2085 Acer truncatum HOM05D022481 ORTHO05D023186 2.6e-06 55.5 98 41.8
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 3.4e-06 55.1 101 33.7
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 3.4e-06 55.1 91 37.4
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 3.4e-06 55.1 55 50.9
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 5.9e-06 54.3 99 33.3
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 5.9e-06 54.3 102 35.3
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 5.9e-06 54.3 99 33.3
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 5.9e-06 54.3 99 33.3
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 5.9e-06 54.3 102 35.3
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 5.9e-06 54.3 105 35.2
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 7.7e-06 53.9 97 42.3
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 7.7e-06 53.9 102 34.3
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 7.7e-06 53.9 94 36.2
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 7.7e-06 53.9 99 39.4


User provided reference genes

Program Settings