Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.2e-308 1062.4 555 100.0
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.3e-222 776.5 554 77.4
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 9.5e-221 770.4 542 78.8
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.0e-210 736.1 539 76.3
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.0e-208 727.6 539 75.9
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.3e-205 718.8 541 74.5
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.3e-205 718.4 539 75.3
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.2e-204 716.8 541 74.5
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 4.0e-171 605.5 550 62.2
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 6.9e-171 604.7 540 63.5
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 9.0e-171 604.4 544 62.3
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.6e-167 593.6 548 61.5
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.8e-166 590.1 543 63.5
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 2.8e-164 582.8 564 60.6
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.1e-163 580.9 592 57.3
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 3.1e-163 579.3 546 62.6
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.0e-163 578.9 438 73.3
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 6.5e-161 571.6 576 59.0
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 2.7e-159 566.2 546 60.4
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 1.4e-155 553.9 539 60.5
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.8e-155 553.5 555 58.4
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 9.0e-155 551.2 540 60.6
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 1.7e-153 547.0 540 60.7
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 7.2e-152 541.6 542 57.7
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 3.6e-151 539.3 539 61.0
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 2.2e-148 530.0 540 57.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 4.8e-148 528.9 538 58.7
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 2.4e-147 526.6 499 62.1
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 6.1e-143 511.9 467 63.2
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 3.7e-140 502.7 577 53.7
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 6.3e-140 501.9 548 56.6
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 6.3e-140 501.9 545 56.9
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 8.2e-140 501.5 534 55.4
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.8e-139 500.4 574 53.7
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 9.1e-139 498.0 574 54.5
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 5.9e-138 495.4 536 56.5
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 4.2e-136 489.2 543 55.8
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 4.2e-136 489.2 560 55.2
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 8.0e-135 485.0 542 56.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.8e-134 483.8 562 54.6
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 6.7e-134 481.9 546 54.4
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 9.7e-133 478.0 552 54.3
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 6.3e-132 475.3 548 52.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 6.3e-132 475.3 552 53.1
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.1e-131 474.6 552 53.6
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 3.1e-131 473.0 457 60.2
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.3e-131 472.2 539 52.9
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 7.7e-130 468.4 540 52.6
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.3e-129 467.6 534 52.2
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 2.2e-129 466.8 545 54.9
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.2e-129 466.8 539 52.5
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 2.9e-129 466.5 533 54.0
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.1e-128 464.5 591 51.4
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.5e-128 464.2 551 54.1
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.7e-127 459.9 544 53.9
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 2.7e-127 459.9 548 53.6
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 4.7e-127 459.1 540 52.0
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 8.0e-127 458.4 532 52.1
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.2e-125 454.5 545 52.7
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.5e-125 454.1 645 47.8
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.8e-124 449.9 550 53.6
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 3.7e-124 449.5 543 53.0
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 5.3e-123 445.7 580 49.5
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 9.1e-123 444.9 537 53.6
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 2.7e-122 443.4 542 52.4
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.3e-121 441.0 536 52.4
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 2.2e-121 440.3 551 51.0
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 2.9e-121 439.9 543 52.5
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-120 438.0 563 50.6
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 4.2e-120 436.0 557 49.7
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 5.5e-120 435.6 543 50.8
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.2e-119 434.5 568 50.7
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 6.1e-119 432.2 548 51.5
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 3.0e-118 429.9 540 53.1
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 4.0e-118 429.5 541 52.3
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 2.8e-116 423.3 537 49.3
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 2.4e-115 420.2 536 49.6
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 1.2e-114 417.9 538 50.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 2.0e-114 417.2 537 48.8
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.3e-113 413.7 339 62.8
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.1e-112 411.4 543 50.5
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 6.8e-110 402.1 530 50.4
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.0e-109 400.6 537 47.7
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.1e-107 394.8 536 46.5
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.2e-106 391.3 534 45.9
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.1e-104 384.8 525 49.3
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.9e-104 384.0 463 52.1
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 6.8e-102 375.6 583 44.4
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.5e-101 374.4 537 45.4
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.3e-100 371.3 559 46.5
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.9e-100 370.2 540 47.2
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 1.9e-99 367.5 532 45.7
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 1.9e-99 367.5 532 45.5
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.5e-98 363.2 456 49.3
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.7e-97 360.9 533 45.6
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.1e-94 351.7 463 46.2
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 2.3e-94 350.5 539 44.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 6.8e-94 349.0 538 43.9
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 3.7e-92 343.2 548 44.3
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 2.3e-89 334.0 561 41.5
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.1e-87 327.4 543 44.2
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.8e-87 327.0 295 58.6
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 6.2e-87 325.9 318 56.3
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.4e-86 324.7 377 53.3
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 4.0e-86 323.2 528 42.0
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 9.5e-80 302.0 539 40.3
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.1e-78 298.5 569 38.8
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 3.4e-77 293.5 571 38.9
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 3.4e-77 293.5 571 38.9
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 4.4e-77 293.1 298 56.0
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.9e-76 290.4 448 48.4
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 9.2e-75 285.4 449 48.3
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 9.6e-64 248.8 325 45.5
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.2e-61 241.9 395 43.8
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.3e-60 238.4 460 39.3
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.8e-49 201.4 432 37.0
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 5.8e-45 186.4 521 32.4
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 3.8e-44 183.7 567 31.0
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 6.5e-44 183.0 574 31.9
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 7.9e-42 176.0 262 42.4
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.9e-36 157.5 254 44.1
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.9e-33 147.1 100 78.0
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 3.3e-32 144.1 175 42.9
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.0e-28 132.5 228 41.2
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 2.2e-28 131.3 181 50.8
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.7e-23 115.2 209 39.7
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 1.3e-20 105.5 249 38.6
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.7e-20 105.1 264 35.6
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 2.9e-20 104.4 129 53.5
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 7.2e-19 99.8 203 38.4
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.5e-16 92.0 64 65.6
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 2.0e-16 91.7 141 33.3
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 7.4e-16 89.7 161 39.8
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 9.1e-14 82.8 99 48.5
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 9.1e-14 82.8 99 48.5
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 9.1e-14 82.8 99 48.5
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 9.1e-14 82.8 99 48.5
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 9.1e-14 82.8 99 48.5
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 9.1e-14 82.8 99 48.5
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 1.3e-12 79.0 95 46.3
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.2e-08 65.9 221 28.1
DCAR_032089 Daucus carota HOM05D002452 ORTHO05D006766 5.7e-08 63.5 58 69.0
Hma1.2p1_0081F.1_g042300 Hydrangea macrophylla HOM05D002452 ORTHO05D006766 5.7e-08 63.5 77 50.6
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 7.5e-08 63.2 68 52.9
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 1.7e-07 62.0 37 78.4


User provided reference genes

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