Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G126100 Theobroma cacao HOM05D003130 ORTHO05D003547 8.7e-69 263.5 128 100.0
Thecc.07G126300 Theobroma cacao HOM05D003130 ORTHO05D003547 1.3e-48 196.4 137 76.6
Duzib213G0586 Durio zibethinus HOM05D003130 ORTHO05D003547 3.9e-45 184.9 137 71.5
COL.COLO4_17512 Corchorus olitorius HOM05D003130 ORTHO05D003547 2.6e-41 172.2 137 69.3
Gohir.D01G041000 Gossypium hirsutum HOM05D003130 ORTHO05D003547 1.1e-39 166.8 137 65.7
Gorai.002G051200 Gossypium raimondii HOM05D003130 ORTHO05D003547 1.1e-39 166.8 137 65.7
Gohir.A01G051200 Gossypium hirsutum HOM05D003130 ORTHO05D003547 4.2e-39 164.9 137 65.0
Gohir.A01G051400 Gossypium hirsutum HOM05D003130 ORTHO05D003547 1.0e-37 160.2 137 63.5
Potri.003G026800 Populus trichocarpa HOM05D003130 ORTHO05D003547 2.6e-33 145.6 136 59.6
Potri.001G387100 Populus trichocarpa HOM05D003130 ORTHO05D003547 3.4e-33 145.2 136 58.8
Atru.chr2.2059 Acer truncatum HOM05D003130 ORTHO05D003547 1.3e-32 143.3 135 59.3
Manes.15G096800 Manihot esculenta HOM05D003130 ORTHO05D003547 1.3e-32 143.3 134 60.4
Potri.011G107600 Populus trichocarpa HOM05D003130 ORTHO05D003547 1.3e-32 143.3 138 57.2
Potri.012G110400 Populus trichocarpa HOM05D003130 ORTHO05D003547 2.9e-32 142.1 138 56.5
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.8e-32 141.7 137 56.9
Ciclev10020872m.g Citrus clementina HOM05D003130 ORTHO05D003547 5.0e-32 141.4 139 56.8
Prupe.4G159900 Prunus persica HOM05D003130 ORTHO05D003547 1.1e-31 140.2 138 58.0
THA.LOC104813997 Tarenaya hassleriana HOM05D003130 ORTHO05D003547 1.1e-31 140.2 143 57.3
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.4e-31 139.8 137 56.9
FvH4_3g18102 Fragaria vesca HOM05D003130 ORTHO05D003547 1.9e-31 139.4 137 56.2
Cpa.g.sc77.51 Carica papaya HOM05D003130 ORTHO05D003547 4.2e-31 138.3 139 57.6
PGR083G1989 Punica granatum HOM05D003130 ORTHO05D003547 7.2e-31 137.5 139 58.3
RcHm_v2.0_Chr5g0030511 Rosa chinensis HOM05D003130 ORTHO05D003547 7.2e-31 137.5 137 54.7
Sabra16G0254600 Salix brachista HOM05D003130 ORTHO05D003547 7.2e-31 137.5 142 57.7
Manes.03G099600 Manihot esculenta HOM05D003130 ORTHO05D003547 9.4e-31 137.1 137 60.6
MD03G1244700 Malus domestica HOM05D003130 ORTHO05D003547 1.2e-30 136.7 137 56.9
Haze_09254 Corylus avellana HOM05D003130 ORTHO05D003547 1.6e-30 136.3 132 58.3
MD00G1184200 Malus domestica HOM05D003130 ORTHO05D003547 1.6e-30 136.3 138 55.8
RcHm_v2.0_Chr5g0030171 Rosa chinensis HOM05D003130 ORTHO05D003547 1.6e-30 136.3 137 54.7
RcHm_v2.0_Chr5g0030431 Rosa chinensis HOM05D003130 ORTHO05D003547 1.6e-30 136.3 137 54.7
CiPaw.11G157200 Carya illinoinensis HOM05D003130 ORTHO05D003547 2.1e-30 136.0 132 58.3
Eucgr.F01299 Eucalyptus grandis HOM05D003130 ORTHO05D003547 2.1e-30 136.0 139 55.4
TWI39G0119 Tripterygium wilfordii HOM05D003130 ORTHO05D003547 2.1e-30 136.0 144 54.2
TAR629G1672 Trochodendron aralioides HOM05D003130 ORTHO05D003547 2.1e-30 136.0 133 59.4
Ciclev10021719m.g Citrus clementina HOM05D003130 ORTHO05D003547 3.6e-30 135.2 138 57.2
GSVIVG01014167001 Vitis vinifera HOM05D003130 ORTHO05D003547 3.6e-30 135.2 138 55.1
Sabra11G0095400 Salix brachista HOM05D003130 ORTHO05D003547 4.7e-30 134.8 134 56.7
MD03G1244800 Malus domestica HOM05D003130 ORTHO05D003547 6.1e-30 134.4 137 54.7
Thhalv10018776m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 1.0e-29 133.7 140 54.3
Aa31LG4G2310 Aethionema arabicum HOM05D003130 ORTHO05D003547 1.4e-29 133.3 141 53.9
Hma1.2p1_0050F.1_g029010 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 1.8e-29 132.9 139 54.7
CSS0012460 Camellia sinensis var. sinensis HOM05D003130 ORTHO05D003547 2.3e-29 132.5 138 53.6
FAN21G2254 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.3e-29 132.5 137 54.0
Ciclev10024365m.g Citrus clementina HOM05D003130 ORTHO05D003547 3.0e-29 132.1 131 57.3
Ciclev10020608m.g Citrus clementina HOM05D003130 ORTHO05D003547 3.9e-29 131.7 138 56.5
PSO170G0675 Papaver somniferum HOM05D003130 ORTHO05D003547 3.9e-29 131.7 136 57.4
Lj1A826G63 Lonicera japonica HOM05D003130 ORTHO05D003547 5.1e-29 131.3 132 55.3
CARHR072210 Cardamine hirsuta HOM05D003130 ORTHO05D003547 6.7e-29 131.0 136 55.9
CANSAT35G0714 Cannabis sativa HOM05D003130 ORTHO05D003547 8.8e-29 130.6 135 55.6
Rhsim06G0210400 Rhododendron simsii HOM05D003130 ORTHO05D003547 1.1e-28 130.2 132 53.8
Lsat_1_v5_gn_9_100580 Lactuca sativa HOM05D003130 ORTHO05D003547 2.0e-28 129.4 138 55.1
Oeu036486.2 Olea europaea HOM05D003130 ORTHO05D003547 3.3e-28 128.6 139 54.0
Nn3g21072 Nelumbo nucifera HOM05D003130 ORTHO05D003547 7.4e-28 127.5 132 56.8
TAR627G0271 Trochodendron aralioides HOM05D003130 ORTHO05D003547 1.7e-27 126.3 133 54.9
Gorai.002G051600 Gossypium raimondii HOM05D003130 ORTHO05D003547 2.2e-27 125.9 132 57.6
PSO782G2947 Papaver somniferum HOM05D003130 ORTHO05D003547 2.2e-27 125.9 136 54.4
MBI07_g00462_MAGBIO Magnolia biondii HOM05D003130 ORTHO05D003547 2.8e-27 125.6 132 53.0
SalBow7G3364 Salvia bowleyana HOM05D003130 ORTHO05D003547 4.8e-27 124.8 132 53.8
BcaB03g16026 Brassica carinata HOM05D003130 ORTHO05D003547 6.3e-27 124.4 136 52.2
Aqoxy4G00223 Aquilegia oxysepala HOM05D003130 ORTHO05D003547 8.2e-27 124.0 136 51.5
Cc05_g10920 Coffea canephora HOM05D003130 ORTHO05D003547 8.2e-27 124.0 144 52.1
vmacro11956 Vaccinium macrocarpon HOM05D003130 ORTHO05D003547 8.2e-27 124.0 135 52.6
Carub.0002s2554 Capsella rubella HOM05D003130 ORTHO05D003547 1.8e-26 122.9 141 53.2
Carub.0002s2551 Capsella rubella HOM05D003130 ORTHO05D003547 2.4e-26 122.5 134 53.0
EL10Ac4g08383 Beta vulgaris HOM05D003130 ORTHO05D003547 3.1e-26 122.1 149 50.3
CsaV3_4G033040 Cucumis sativus L. HOM05D003130 ORTHO05D003547 4.1e-26 121.7 138 52.2
Lsat_1_v5_gn_7_102180 Lactuca sativa HOM05D003130 ORTHO05D003547 4.1e-26 121.7 157 46.5
Hma1.2p1_1650F.1_g295670 Hydrangea macrophylla HOM05D003130 ORTHO05D003547 7.0e-26 120.9 134 55.2
Aqoxy4G00220 Aquilegia oxysepala HOM05D003130 ORTHO05D003547 1.2e-25 120.2 136 50.0
MSTRG.14241 Avicennia marina HOM05D003130 ORTHO05D003547 1.2e-25 120.2 138 51.4
A07p43930 Brassica napus HOM05D003130 ORTHO05D003547 1.2e-25 120.2 79 72.2
Sc15g0000080 Simmondsia chinensis HOM05D003130 ORTHO05D003547 1.2e-25 120.2 131 54.2
C06p52560 Brassica napus HOM05D003130 ORTHO05D003547 1.5e-25 119.8 134 51.5
BolC6t40275H Brassica oleracea HOM05D003130 ORTHO05D007530 1.5e-25 119.8 134 51.5
MELO3C025645.2 Cucumis melo HOM05D003130 ORTHO05D003547 2.0e-25 119.4 136 53.7
ClCG11G017400 Citrullus lanatus HOM05D003130 ORTHO05D003547 2.6e-25 119.0 138 51.4
PSO079G0057 Papaver somniferum HOM05D003130 ORTHO05D003547 3.5e-25 118.6 79 73.4
SpUn0074_0050 Schrenkiella parvula HOM05D003130 ORTHO05D003547 3.5e-25 118.6 105 62.9
BraA07t31900Z Brassica rapa HOM05D003130 ORTHO05D003547 4.5e-25 118.2 134 51.5
Dinv15006 Davidia involucrata HOM05D003130 ORTHO05D003547 4.5e-25 118.2 126 54.8
Sp5g33740 Schrenkiella parvula HOM05D003130 ORTHO05D003547 5.9e-25 117.9 141 53.9
SpUn0074_0020 Schrenkiella parvula HOM05D003130 ORTHO05D003547 5.9e-25 117.9 141 53.9
AT1G78660 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 1.7e-24 116.3 79 73.4
Thhalv10018738m.g Eutrema salsugineum HOM05D003130 ORTHO05D003547 1.7e-24 116.3 135 52.6
AL2G39070 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 2.2e-24 115.9 79 73.4
AT1G78680 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 2.2e-24 115.9 134 51.5
PSO423G0175 Papaver somniferum HOM05D003130 ORTHO05D003547 2.9e-24 115.5 135 50.4
Phvul.005G080700 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 2.9e-24 115.5 96 63.5
Sed0012404 Sechium edule HOM05D003130 ORTHO05D003547 2.9e-24 115.5 138 50.7
Medtr2g075760 Medicago truncatula HOM05D003130 ORTHO05D003547 5.0e-24 114.8 79 72.2
AL262U10016 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 6.5e-24 114.4 134 50.7
DCAR_019604 Daucus carota HOM05D003130 ORTHO05D003547 6.5e-24 114.4 138 50.0
SGA_v2.0_scaffold47G17804 Striga asiatica HOM05D003130 ORTHO05D003547 6.5e-24 114.4 138 50.7
A02p22320 Brassica napus HOM05D003130 ORTHO05D003547 8.5e-24 114.0 133 53.4
BraA02t07236Z Brassica rapa HOM05D003130 ORTHO05D003547 8.5e-24 114.0 133 53.4
C02p35860 Brassica napus HOM05D003130 ORTHO05D003547 1.1e-23 113.6 133 53.4
Lj1g0011966 Lotus japonicus HOM05D003130 ORTHO05D003547 1.1e-23 113.6 96 59.4
ATR0127G004 Amborella trichopoda HOM05D003130 ORTHO05D003547 1.5e-23 113.2 139 47.5
BcaB05g25151 Brassica carinata HOM05D003130 ORTHO05D003547 1.5e-23 113.2 133 53.4
CARHR072190 Cardamine hirsuta HOM05D003130 ORTHO05D003547 1.5e-23 113.2 103 60.2
AL2G39084 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 1.9e-23 112.8 134 50.0
BcaC03g15835 Brassica carinata HOM05D003130 ORTHO05D003547 1.9e-23 112.8 133 53.4
BolC2t09599H Brassica oleracea HOM05D003130 ORTHO05D003547 1.9e-23 112.8 133 53.4
AUR62019606 Chenopodium quinoa HOM05D003130 ORTHO05D003547 2.5e-23 112.5 111 57.7
HanXRQChr15g0495171 Helianthus annuus HOM05D003130 ORTHO05D003547 2.5e-23 112.5 133 48.9
Actinidia12592 Actinidia chinensis HOM05D003130 ORTHO05D003547 3.2e-23 112.1 79 69.6
TPR.G16064 Trifolium pratense HOM05D003130 ORTHO05D003547 3.2e-23 112.1 95 63.2
Sopen10g003240 Solanum pennellii HOM05D003130 ORTHO05D003547 5.5e-23 111.3 105 54.3
AUR62037582 Chenopodium quinoa HOM05D003130 ORTHO05D003547 7.2e-23 110.9 106 54.7
Glyma.13G268000 Glycine max HOM05D003130 ORTHO05D003547 7.2e-23 110.9 96 61.5
VMungo1080G1321 Vigna mungo HOM05D003130 ORTHO05D003547 7.2e-23 110.9 94 62.8
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 9.4e-23 110.5 134 49.3
Ca_03949_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 1.2e-22 110.2 116 55.2
Lj3g0027506 Lotus japonicus HOM05D003130 ORTHO05D003547 1.2e-22 110.2 124 49.2
ECA240G1349 Erigeron canadensis HOM05D003130 ORTHO05D003547 1.6e-22 109.8 81 66.7
HPP92_006383 Vanilla planifolia HOM05D003130 ORTHO05D003547 2.1e-22 109.4 79 68.4
Solyc10g007410.4 Solanum lycopersicum HOM05D003130 ORTHO05D003547 6.1e-22 107.8 105 52.4
PGSC0003DMG400021256 Solanum tuberosum HOM05D003130 ORTHO05D003547 6.1e-22 107.8 105 52.4
Medtr2g075780 Medicago truncatula HOM05D003130 ORTHO05D003547 8.0e-22 107.5 95 63.2
unitig_0.g2277 Utricularia gibba HOM05D003130 ORTHO05D003547 8.0e-22 107.5 84 65.5
Medtr2g075770 Medicago truncatula HOM05D003130 ORTHO05D003547 1.0e-21 107.1 120 52.5
Peaxi162Scf00692g00317 Petunia axillaris HOM05D003130 ORTHO05D003547 1.4e-21 106.7 79 64.6
SpUn0074_0040 Schrenkiella parvula HOM05D003130 ORTHO05D003547 1.4e-21 106.7 140 50.0
Psat5g236280 Pisum sativum HOM05D003130 ORTHO05D003547 1.8e-21 106.3 108 56.5
PGSC0003DMG400007066 Solanum tuberosum HOM05D003130 ORTHO05D003547 1.8e-21 106.3 79 62.0
Actinidia07512 Actinidia chinensis HOM05D003130 ORTHO05D003547 2.3e-21 105.9 73 67.1
Lalb_Chr25g0285721 Lupinus albus HOM05D003130 ORTHO05D003547 2.3e-21 105.9 79 67.1
Solyc07g062270.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 4.0e-21 105.1 79 60.8
Nitab4.5_0000383g0060 Nicotiana tabacum HOM05D003130 ORTHO05D003547 5.2e-21 104.8 79 68.4
CsaV3_4G033060 Cucumis sativus L. HOM05D003130 ORTHO05D003547 1.5e-20 103.2 140 44.3
Zm00001eb353180 Zea mays HOM05D003130 ORTHO05D003547 1.5e-20 103.2 79 63.3
Sopen07g030550 Solanum pennellii HOM05D003130 ORTHO05D003547 2.6e-20 102.4 134 46.3
ECA236G4062 Erigeron canadensis HOM05D003130 ORTHO05D003547 3.3e-20 102.1 140 42.1
SGA_v2.0_scaffold130G34280 Striga asiatica HOM05D003130 ORTHO05D003547 3.3e-20 102.1 81 65.4
Ca_03950_v3 Cicer arietinum L. HOM05D003130 ORTHO05D003547 4.4e-20 101.7 95 60.0
Os05g0517500 Oryza sativa ssp. japonica HOM05D003130 ORTHO05D003547 4.4e-20 101.7 79 64.6
Migut.M00712 Erythranthe guttata HOM05D003130 ORTHO05D003547 5.7e-20 101.3 79 64.6
Nn6g34459 Nelumbo nucifera HOM05D003130 ORTHO05D003547 5.7e-20 101.3 131 46.6
Nitab4.5_0000788g0020 Nicotiana tabacum HOM05D003130 ORTHO05D003547 7.4e-20 100.9 134 45.5
CsaV3_4G033050 Cucumis sativus L. HOM05D003130 ORTHO05D003547 9.7e-20 100.5 137 45.3
SGA_v2.0_scaffold73G24394 Striga asiatica HOM05D003130 ORTHO05D003547 1.3e-19 100.1 79 63.3
Carub.0002s2553 Capsella rubella HOM05D003130 ORTHO05D003547 1.7e-19 99.8 106 50.9
Lalb_Chr20g0109171 Lupinus albus HOM05D003130 ORTHO05D003547 2.2e-19 99.4 79 65.8
AL262U10014 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 2.8e-19 99.0 147 49.0
AL2G39082 Arabidopsis lyrata HOM05D003130 ORTHO05D003547 2.8e-19 99.0 147 49.0
Nitab4.5_0006663g0030 Nicotiana tabacum HOM05D003130 ORTHO05D003547 2.8e-19 99.0 79 58.2
BraA07t31898Z Brassica rapa HOM05D003130 ORTHO05D003547 4.8e-19 98.2 140 46.4
Glyma.13G267851 Glycine max HOM05D003130 ORTHO05D003547 4.8e-19 98.2 132 47.0
Nitab4.5_0022404g0010 Nicotiana tabacum HOM05D003130 ORTHO05D003547 4.8e-19 98.2 79 58.2
QL08p022953 Quercus lobata HOM05D003130 ORTHO05D003547 4.8e-19 98.2 114 53.5
CAN.G904.33 Capsicum annuum HOM05D003130 ORTHO05D003547 1.4e-18 96.7 97 52.6
A07p43920 Brassica napus HOM05D003130 ORTHO05D003547 2.4e-18 95.9 140 45.7
Phvul.005G080600 Phaseolus vulgaris HOM05D003130 ORTHO05D003547 2.4e-18 95.9 103 50.5
AT1G78670 Arabidopsis thaliana HOM05D003130 ORTHO05D003547 3.1e-18 95.5 146 43.2
Migut.H02010 Erythranthe guttata HOM05D003130 ORTHO05D003547 3.1e-18 95.5 79 60.8
Migut.H02009 Erythranthe guttata HOM05D003130 ORTHO05D003547 4.1e-18 95.1 134 42.5
Migut.H02016 Erythranthe guttata HOM05D003130 ORTHO05D003547 4.1e-18 95.1 81 59.3
Solyc07g062280.3 Solanum lycopersicum HOM05D003130 ORTHO05D003547 4.1e-18 95.1 79 55.7
Peaxi162Scf00111g01453 Petunia axillaris HOM05D003130 ORTHO05D003547 5.3e-18 94.7 132 44.7
Sopen07g030560 Solanum pennellii HOM05D003130 ORTHO05D003547 1.2e-17 93.6 79 55.7
PGSC0003DMG400035974 Solanum tuberosum HOM05D003130 ORTHO05D003547 2.6e-17 92.4 79 54.4
Nitab4.5_0000347g0200 Nicotiana tabacum HOM05D003130 ORTHO05D003547 5.9e-17 91.3 91 52.7
VMungo1080G1395 Vigna mungo HOM05D003130 ORTHO05D003547 5.9e-17 91.3 93 53.8
arahy.Tifrunner.gnm1.ann1.F86IGW Arachis hypogaea HOM05D003130 ORTHO05D003547 4.0e-13 78.6 79 54.4
Peaxi162Scf01132g00139 Petunia axillaris HOM05D003130 ORTHO05D003547 1.8e-10 69.7 57 64.9
Medtr2g075790 Medicago truncatula HOM05D003130 ORTHO05D003547 3.1e-10 68.9 58 62.1
SEGI_20276 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 4.5e-09 65.1 65 49.2
SEGI_24696 Sequoiadendron giganteum HOM05D003130 ORTHO05D003547 4.5e-09 65.1 65 49.2
Pp3c26_1140 Physcomitrium patens HOM05D003130 ORTHO05D003547 1.3e-08 63.5 73 47.9
SMO165G0138 Selaginella moellendorffii HOM05D003130 ORTHO05D003547 2.2e-08 62.8 76 44.7
Migut.H02014 Erythranthe guttata HOM05D003130 ORTHO05D003547 6.5e-08 61.2 60 55.0
Pp3c17_12060 Physcomitrium patens HOM05D003130 ORTHO05D003547 8.5e-08 60.8 78 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1069 Anthoceros agrestis HOM05D003130 ORTHO05D003547 1.9e-07 59.7 41 63.4
MELO3C032479.2 Cucumis melo HOM05D003130 ORTHO05D003547 5.5e-07 58.2 54 55.6
Cre06.g275050 Chlamydomonas reinhardtii HOM05D003130 ORTHO05D003547 3.6e-06 55.5 69 39.1
SalBow7G2473 Salvia bowleyana HOM05D003130 ORTHO05D003547 6.1e-06 54.7 47 59.6


User provided reference genes

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