Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 1.5e-75 286.2 155 100.0
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 7.5e-67 257.3 156 91.7
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 5.3e-44 181.4 159 66.0
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 5.3e-44 181.4 159 66.0
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.4e-41 173.3 165 61.2
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 3.8e-34 148.7 101 72.3
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 4.5e-19 98.6 145 44.1
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 1.6e-16 90.1 192 35.4
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 1.1e-14 84.0 145 39.3
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 4.3e-14 82.0 142 43.0
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 2.8e-13 79.3 161 34.2
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 2.8e-13 79.3 155 40.6
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 2.8e-13 79.3 147 38.1
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 4.1e-12 75.5 208 28.8
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 9.0e-12 74.3 154 36.4
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 5.9e-11 71.6 149 38.3
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 5.9e-11 71.6 134 32.1
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 1.0e-10 70.9 173 37.0
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 1.3e-10 70.5 160 33.1
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 5.0e-10 68.6 156 32.7
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 8.5e-10 67.8 147 31.3
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 1.1e-09 67.4 142 34.5
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.4e-09 67.0 152 32.9
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 1.4e-09 67.0 134 38.1
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.4e-09 67.0 134 38.1
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.4e-09 67.0 153 34.0
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.4e-09 67.0 170 36.5
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.5e-09 66.2 133 38.3
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 3.2e-09 65.9 138 38.4
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.2e-09 65.9 127 36.2
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 4.2e-09 65.5 167 30.5
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 9.4e-09 64.3 167 30.5
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.6e-08 63.5 138 34.1
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 2.1e-08 63.2 45 68.9
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 2.7e-08 62.8 150 33.3
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 2.7e-08 62.8 133 32.3
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 3.6e-08 62.4 133 32.3
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 7.9e-08 61.2 137 35.0
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 7.9e-08 61.2 177 27.1
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.0e-07 60.8 157 29.9
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.8e-07 60.1 170 32.9
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 2.3e-07 59.7 170 32.9
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 3.0e-07 59.3 182 34.1
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 3.9e-07 58.9 170 34.1
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 3.9e-07 58.9 121 37.2
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 5.1e-07 58.5 150 30.7
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 5.1e-07 58.5 127 38.6
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 5.1e-07 58.5 170 36.5
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 8.8e-07 57.8 164 32.3
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.1e-06 57.4 131 35.1
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 1.1e-06 57.4 151 29.8
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.5e-06 57.0 124 36.3
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.5e-06 57.0 156 30.8
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 2.5e-06 56.2 125 34.4
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 3.3e-06 55.8 128 32.8
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 4.3e-06 55.5 150 34.0
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 5.7e-06 55.1 142 32.4
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 5.7e-06 55.1 30 73.3
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 5.7e-06 55.1 134 32.1
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 5.7e-06 55.1 142 25.4
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 9.7e-06 54.3 29 72.4
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 9.7e-06 54.3 128 34.4


User provided reference genes

Program Settings