Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 2.4e-270 934.9 458 100.0
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 3.4e-248 861.3 458 91.7
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 3.9e-244 847.8 473 89.0
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 4.7e-234 814.3 458 86.0
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 6.2e-234 813.9 458 86.2
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 1.4e-233 812.8 458 85.8
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 3.3e-211 738.4 462 78.1
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 4.5e-208 728.0 465 77.8
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 5.8e-208 727.6 459 75.8
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 1.3e-207 726.5 459 77.3
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 2.9e-207 725.3 460 76.7
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 2.9e-207 725.3 462 77.5
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 3.8e-207 724.9 460 78.3
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 4.9e-207 724.5 462 76.4
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 4.9e-207 724.5 476 75.2
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 6.4e-207 724.2 457 75.5
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 7.1e-206 720.7 455 75.4
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 3.5e-205 718.4 462 76.8
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 1.3e-204 716.5 460 76.1
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 3.0e-204 715.3 462 74.7
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 6.7e-204 714.1 447 77.4
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 2.5e-203 712.2 460 75.9
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 1.8e-201 706.1 447 74.0
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 6.9e-201 704.1 462 72.7
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 2.6e-200 702.2 461 75.9
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 3.4e-200 701.8 447 73.2
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 4.5e-200 701.4 461 75.3
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 4.5e-200 701.4 455 74.7
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 4.9e-199 698.0 461 75.1
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 2.4e-198 695.7 461 75.1
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 5.5e-198 694.5 464 72.2
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 5.5e-198 694.5 447 72.3
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 9.3e-198 693.7 455 73.8
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 9.3e-198 693.7 454 74.9
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 1.6e-197 693.0 471 73.5
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 2.7e-197 692.2 461 74.4
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 3.5e-197 691.8 456 71.5
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 4.6e-197 691.4 462 72.5
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 6.0e-197 691.0 463 73.9
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 1.3e-196 689.9 454 74.4
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 1.3e-196 689.9 459 72.5
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 1.3e-196 689.9 463 72.1
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 3.0e-196 688.7 461 73.8
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 3.9e-196 688.3 463 73.2
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 8.7e-196 687.2 447 72.5
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 8.7e-196 687.2 464 71.6
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 1.1e-195 686.8 463 73.0
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 1.9e-195 686.0 455 74.5
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 5.6e-195 684.5 461 74.2
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 7.4e-195 684.1 463 72.8
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 2.8e-194 682.2 465 71.6
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 1.8e-193 679.5 452 74.1
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 1.8e-193 679.5 458 71.6
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 6.9e-193 677.6 459 70.6
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 9.0e-193 677.2 455 73.8
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 9.0e-193 677.2 455 73.8
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 1.2e-192 676.8 463 71.5
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 2.0e-192 676.0 463 71.3
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 2.6e-192 675.6 460 73.9
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 1.3e-191 673.3 460 71.7
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 2.9e-191 672.2 458 71.2
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 2.9e-191 672.2 472 71.6
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 3.8e-191 671.8 463 71.9
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 2.5e-190 669.1 502 66.7
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 4.2e-190 668.3 454 72.9
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.5e-190 667.9 479 70.6
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 2.7e-189 665.6 469 71.4
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 3.5e-189 665.2 469 71.4
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 1.5e-187 659.8 477 69.6
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 3.3e-187 658.7 458 71.6
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 4.3e-187 658.3 461 72.5
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 5.7e-187 657.9 466 69.5
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 2.4e-185 652.5 466 69.1
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 5.3e-185 651.4 429 75.5
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 9.0e-185 650.6 459 71.7
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 2.0e-184 649.4 453 71.5
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 3.4e-184 648.7 462 70.1
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 4.5e-184 648.3 465 70.8
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 1.7e-183 646.4 512 62.5
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 3.6e-181 638.6 431 73.8
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 3.9e-180 635.2 459 67.8
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 8.7e-180 634.0 463 68.3
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.1e-179 633.6 445 72.1
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 1.3e-178 630.2 402 77.4
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 4.8e-178 628.2 464 69.2
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 7.9e-173 610.9 458 64.8
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 1.3e-170 603.6 461 66.2
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 6.3e-170 601.3 390 72.1
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 3.8e-167 592.0 414 70.5
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.5e-163 580.1 463 64.1
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.7e-162 576.6 474 64.3
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 6.5e-159 564.7 429 66.7
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 5.2e-156 555.1 454 64.8
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 9.4e-150 534.3 460 61.1
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 1.0e-148 530.8 310 83.9
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 7.5e-147 524.6 463 58.5
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 1.1e-145 520.8 473 56.9
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 4.0e-140 502.3 448 56.0
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 5.7e-131 471.9 341 65.4
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 6.6e-127 458.4 281 77.6
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 1.2e-125 454.1 299 76.3
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 3.6e-125 452.6 421 58.9
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 5.8e-123 445.3 378 64.8
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.6e-112 409.1 333 65.2
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 6.0e-112 408.7 304 65.8
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.2e-104 384.4 347 59.9
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 3.9e-103 379.4 402 51.5
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 2.5e-102 376.7 457 44.2
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 5.1e-95 352.4 464 44.6
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 4.8e-93 345.9 473 41.0
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 6.2e-93 345.5 456 47.6
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 1.8e-87 327.4 228 68.0
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 2.5e-86 323.6 457 40.0
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.8e-84 317.4 305 56.7
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 1.7e-82 310.8 164 93.9
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 3.2e-81 306.6 246 66.3
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 4.2e-73 279.6 236 61.0
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 2.3e-71 273.9 257 53.7
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 4.2e-65 253.1 126 97.6
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 9.7e-54 215.3 167 59.9
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 5.2e-47 193.0 161 66.5
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 4.4e-38 163.3 113 69.0
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 3.1e-36 157.1 123 63.4
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 3.8e-34 150.2 125 56.8
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 9.4e-33 145.6 100 76.0
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 6.8e-31 139.4 131 55.0
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 4.8e-29 133.3 102 67.6
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 8.0e-24 115.9 85 63.5
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 8.9e-23 112.5 360 27.5
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 4.9e-21 106.7 52 100.0
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 5.4e-20 103.2 63 79.4
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 3.6e-08 63.9 54 63.0


User provided reference genes

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