Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G112000 Theobroma cacao HOM05D009258 ORTHO05D009583 2.6e-172 608.6 301 100.0
Thecc.05G216900 Theobroma cacao HOM05D009258 ORTHO05D009583 5.7e-87 325.1 202 79.2
Thecc.09G245100 Theobroma cacao HOM05D009258 ORTHO05D009583 9.2e-37 158.3 142 48.6
Thecc.09G223500 Theobroma cacao HOM05D009258 ORTHO05D000006 2.7e-36 156.8 366 29.8
Thecc.02G220600 Theobroma cacao HOM05D009258 ORTHO05D009583 4.9e-30 136.0 145 43.4
Thecc.03G167900 Theobroma cacao HOM05D009258 ORTHO05D009583 1.9e-29 134.0 177 37.3
Thecc.10G051100 Theobroma cacao HOM05D009258 ORTHO05D009583 8.1e-25 118.6 127 40.2
Thecc.01G001300 Theobroma cacao HOM05D009258 ORTHO05D009583 1.2e-20 104.8 131 42.7
COL.COLO4_27331 Corchorus olitorius HOM05D009258 ORTHO05D009583 2.4e-16 90.5 131 35.9
Thecc.09G211800 Theobroma cacao HOM05D009258 ORTHO05D009583 1.2e-15 88.2 107 29.9
COL.COLO4_25415 Corchorus olitorius HOM05D009258 ORTHO05D009583 2.0e-15 87.4 131 35.1
COL.COLO4_15431 Corchorus olitorius HOM05D008263 ORTHO05D009583 2.9e-14 83.6 164 26.2
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 7.1e-13 79.0 137 33.6
TPR.G18402 Trifolium pratense HOM05D002777 ORTHO05D001516 1.2e-12 78.2 140 27.9
COL.COLO4_29954 Corchorus olitorius HOM05D009258 ORTHO05D009583 1.6e-12 77.8 111 32.4
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-12 77.8 172 29.1
COL.COLO4_04627 Corchorus olitorius HOM05D008263 ORTHO05D009583 2.7e-12 77.0 148 26.4
Thecc.05G145500 Theobroma cacao HOM05D009258 ORTHO05D009583 6.0e-12 75.9 74 44.6
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 1.0e-11 75.1 155 26.5
COL.COLO4_37719 Corchorus olitorius HOM05D008263 ORTHO05D009583 3.9e-11 73.2 121 30.6
Thecc.02G255700 Theobroma cacao HOM05D009258 ORTHO05D009583 3.9e-11 73.2 123 34.1
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.7e-11 72.4 169 26.6
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.7e-11 72.0 179 26.8
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-10 71.2 169 26.0
COL.COLO4_03637 Corchorus olitorius HOM05D008263 ORTHO05D009583 2.5e-10 70.5 125 28.8
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.5e-10 70.5 118 29.7
Thecc.07G067600 Theobroma cacao HOM05D023671 ORTHO05D001516 2.5e-10 70.5 115 27.8
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.5e-10 70.5 154 27.9
Thecc.09G168100 Theobroma cacao HOM05D000003 ORTHO05D000006 4.3e-10 69.7 60 48.3
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.6e-10 68.6 128 31.2
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.3e-09 68.2 282 24.1
Thecc.04G129200 Theobroma cacao HOM05D009258 ORTHO05D009583 1.6e-09 67.8 106 33.0
Thecc.01G169000 Theobroma cacao HOM05D009258 ORTHO05D009583 2.1e-09 67.4 158 24.1
Aqoxy2G01946 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.8e-09 67.0 317 24.9
COL.COLO4_03775 Corchorus olitorius HOM05D009258 ORTHO05D009583 2.8e-09 67.0 98 33.7
COL.COLO4_16394 Corchorus olitorius HOM05D009258 ORTHO05D009583 2.8e-09 67.0 86 31.4
Lj1g0011765 Lotus japonicus HOM05D008220 ORTHO05D010358 4.8e-09 66.2 117 28.2
Medtr3g048390 Medicago truncatula HOM05D008558 ORTHO05D011658 4.8e-09 66.2 147 29.3
TPR.G19363 Trifolium pratense HOM05D002777 ORTHO05D001516 8.2e-09 65.5 168 26.2
COL.COLO4_32986 Corchorus olitorius HOM05D008263 ORTHO05D009583 1.1e-08 65.1 116 26.7
Lj2g0021049 Lotus japonicus HOM05D002777 ORTHO05D001516 1.1e-08 65.1 144 29.2
Phvul.007G156800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.4e-08 64.7 144 32.6
COL.COLO4_36434 Corchorus olitorius HOM05D008263 ORTHO05D009583 1.8e-08 64.3 82 31.7
COL.COLO4_33164 Corchorus olitorius HOM05D008263 ORTHO05D009583 3.1e-08 63.5 116 27.6
COL.COLO4_19561 Corchorus olitorius HOM05D008263 ORTHO05D009583 4.0e-08 63.2 116 25.9
Rhsim05G0113800 Rhododendron simsii HOM05D010265 ORTHO05D009356 5.3e-08 62.8 136 26.5
COL.COLO4_22771 Corchorus olitorius HOM05D008263 ORTHO05D009583 6.9e-08 62.4 91 29.7
TPR.G14641 Trifolium pratense HOM05D002777 ORTHO05D001516 1.5e-07 61.2 124 27.4
COL.COLO4_28775 Corchorus olitorius HOM05D008263 ORTHO05D009583 2.0e-07 60.8 98 27.6
Lj2g0022307 Lotus japonicus HOM05D008220 ORTHO05D010358 2.0e-07 60.8 99 29.3
Thecc.09G221000 Theobroma cacao HOM05D000038 ORTHO05D000143 2.0e-07 60.8 143 25.9
TPR.G25363 Trifolium pratense HOM05D007807 ORTHO05D001516 2.6e-07 60.5 150 24.0
Lj2g0010122 Lotus japonicus HOM05D008220 ORTHO05D010358 3.4e-07 60.1 113 28.3
Hma1.2p1_0057F.1_g032280 Hydrangea macrophylla HOM05D000003 ORTHO05D000006 5.8e-07 59.3 53 50.9
Lj6g0001845 Lotus japonicus HOM05D008220 ORTHO05D010358 5.8e-07 59.3 120 29.2
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 7.6e-07 58.9 89 28.1
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 7.6e-07 58.9 89 28.1
Lj1g0010280 Lotus japonicus HOM05D008220 ORTHO05D010358 1.3e-06 58.2 94 27.7
Lj1g0011459 Lotus japonicus HOM05D008220 ORTHO05D010358 1.3e-06 58.2 133 27.1
Rhsim10G0135400 Rhododendron simsii HOM05D001175 ORTHO05D003291 1.3e-06 58.2 92 28.3
Lj2g0018575 Lotus japonicus HOM05D002777 ORTHO05D001516 1.7e-06 57.8 162 24.7
Medtr6g048830 Medicago truncatula HOM05D008558 ORTHO05D001516 1.7e-06 57.8 127 29.9
Thecc.06G100900 Theobroma cacao HOM05D000003 ORTHO05D002259 2.2e-06 57.4 354 20.9
Thecc.08G181200 Theobroma cacao HOM05D009258 ORTHO05D009583 2.2e-06 57.4 148 28.4
Aqoxy4G01868 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 2.9e-06 57.0 58 39.7
Lj5g0019505 Lotus japonicus HOM05D002777 ORTHO05D001516 2.9e-06 57.0 153 23.5
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.9e-06 57.0 120 28.3
COL.COLO4_06134 Corchorus olitorius HOM05D009258 ORTHO05D009583 3.8e-06 56.6 70 34.3
Lj1g0017334 Lotus japonicus HOM05D008220 ORTHO05D010358 4.9e-06 56.2 101 25.7
ECA248G2000 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.5e-06 55.8 255 23.1
Lj3g0023441 Lotus japonicus HOM05D008220 ORTHO05D010358 8.4e-06 55.5 155 25.2
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 8.4e-06 55.5 78 37.2
vmacro23283 Vaccinium macrocarpon HOM05D000163 ORTHO05D009356 8.4e-06 55.5 101 29.7


User provided reference genes

Program Settings