Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G109900 Theobroma cacao HOM05D008293 ORTHO05D010504 2.0e-267 925.2 474 100.0
COL.COLO4_24863 Corchorus olitorius HOM05D008293 ORTHO05D010504 1.1e-217 760.0 471 82.8
Gohir.A13G148900 Gossypium hirsutum HOM05D008293 ORTHO05D010504 5.8e-203 711.1 459 79.1
Gohir.D13G153400 Gossypium hirsutum HOM05D008293 ORTHO05D010504 1.9e-201 706.1 474 77.6
Gorai.013G173300 Gossypium raimondii HOM05D008293 ORTHO05D010504 1.2e-200 703.4 476 77.7
Dinv14981 Davidia involucrata HOM05D008293 ORTHO05D010504 4.1e-180 635.2 482 67.8
Prupe.4G167100 Prunus persica HOM05D008293 ORTHO05D010504 9.4e-177 624.0 475 67.8
GSVIVG01014211001 Vitis vinifera HOM05D008293 ORTHO05D010504 1.6e-176 623.2 446 70.9
CSS0000482 Camellia sinensis var. sinensis HOM05D008293 ORTHO05D010504 2.1e-176 622.9 470 68.7
Actinidia18798 Actinidia chinensis HOM05D008293 ORTHO05D010504 2.0e-174 616.3 466 68.5
Atru.chr2.2164 Acer truncatum HOM05D008293 ORTHO05D010504 3.7e-173 612.1 425 73.9
MD03G1241800 Malus domestica HOM05D008293 ORTHO05D010504 1.2e-171 607.1 462 67.7
TAR627G0720 Trochodendron aralioides HOM05D008293 ORTHO05D010504 1.4e-169 600.1 461 67.5
QL08p026533 Quercus lobata HOM05D008293 ORTHO05D010504 7.2e-169 597.8 463 67.4
Rhsim04G0025400 Rhododendron simsii HOM05D008293 ORTHO05D010504 1.2e-168 597.0 468 66.5
Hma1.2p1_2505F.1_g323420 Hydrangea macrophylla HOM05D008293 ORTHO05D010504 8.2e-165 584.3 426 67.8
Nitab4.5_0001145g0060 Nicotiana tabacum HOM05D008293 ORTHO05D010504 1.9e-161 573.2 458 64.0
Nitab4.5_0000246g0170 Nicotiana tabacum HOM05D008293 ORTHO05D010504 4.2e-161 572.0 458 64.0
CANSAT35G0405 Cannabis sativa HOM05D008293 ORTHO05D010504 7.2e-161 571.2 467 66.4
Sopen07g030780 Solanum pennellii HOM05D008293 ORTHO05D010504 1.6e-160 570.1 459 63.0
Haze_09337 Corylus avellana HOM05D008293 ORTHO05D010504 2.7e-160 569.3 466 64.4
Peaxi162Scf00069g02232 Petunia axillaris HOM05D008293 ORTHO05D010504 4.0e-159 565.5 429 67.4
PGSC0003DMG400012428 Solanum tuberosum HOM05D008293 ORTHO05D010504 1.7e-157 560.1 455 62.9
CAN.G162.9 Capsicum annuum HOM05D008293 ORTHO05D010504 6.3e-157 558.1 419 66.6
PSO782G2569 Papaver somniferum HOM05D008293 ORTHO05D010504 2.4e-156 556.2 456 63.6
Migut.M00735 Erythranthe guttata HOM05D008293 ORTHO05D010504 7.7e-155 551.2 458 63.1
Ciclev10020583m.g Citrus clementina HOM05D008293 ORTHO05D010504 6.5e-154 548.1 385 71.9
PGR083G2613 Punica granatum HOM05D008293 ORTHO05D010504 1.1e-153 547.4 426 66.0
Aqoxy4G00368 Aquilegia oxysepala HOM05D008293 ORTHO05D010504 3.6e-152 542.3 453 62.7
Cc05_g11210 Coffea canephora HOM05D008293 ORTHO05D010504 1.3e-138 497.3 374 66.6
HPP92_024759 Vanilla planifolia HOM05D008293 ORTHO05D010504 5.6e-137 491.9 431 59.2
Nn1g09105 Nelumbo nucifera HOM05D008293 ORTHO05D010504 9.8e-134 481.1 421 59.9
AagrBONN_evm.TU.Sc2ySwM_344.4932 Anthoceros agrestis HOM05D008293 ORTHO05D010504 2.9e-133 479.6 478 53.8
SGA_v2.0_scaffold55G19705 Striga asiatica HOM05D008293 ORTHO05D010504 2.0e-126 456.8 431 57.8
Mapoly0032s0102 Marchantia polymorpha HOM05D008293 ORTHO05D010504 3.7e-125 452.6 463 53.8
Solyc07g062543.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 1.2e-123 447.6 345 64.1
Pp3c19_10600 Physcomitrium patens HOM05D008293 ORTHO05D010504 2.0e-123 446.8 424 53.1
Pp3c22_22050 Physcomitrium patens HOM05D008293 ORTHO05D010504 2.3e-122 443.4 423 53.2
Ciclev10023335m.g Citrus clementina HOM05D008293 ORTHO05D010504 1.6e-120 437.2 421 57.5
RcHm_v2.0_Chr5g0030831 Rosa chinensis HOM05D008293 ORTHO05D010504 3.6e-120 436.0 344 63.7
SMO118G0404 Selaginella moellendorffii HOM05D008293 ORTHO05D010504 1.4e-119 434.1 454 52.2
Lj1A831T70 Lonicera japonica HOM05D008293 ORTHO05D010504 2.1e-96 357.1 263 67.7
PRCOL_00003950 Prasinoderma coloniale HOM05D008293 ORTHO05D010504 1.1e-95 354.8 431 45.7
CBR_g40882 Chara braunii HOM05D008293 ORTHO05D010504 6.4e-93 345.5 428 45.1
RcHm_v2.0_Chr5g0031211 Rosa chinensis HOM05D008293 ORTHO05D010504 3.2e-92 343.2 340 55.6
SEGI_20639 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 8.7e-90 335.1 293 59.0
Cpa.g.sc97.100 Carica papaya HOM05D008293 ORTHO05D010504 8.7e-82 308.5 203 75.9
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 2.9e-69 266.9 186 72.6
RcHm_v2.0_Chr7g0194341 Rosa chinensis HOM05D008293 ORTHO05D010504 3.6e-67 260.0 238 60.1
RcHm_v2.0_Chr5g0031411 Rosa chinensis HOM05D008293 ORTHO05D010504 5.0e-61 239.6 221 57.0
Ca_29004_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 1.0e-50 205.3 244 47.1
Cfa019577 Carpinus fangiana HOM05D008293 ORTHO05D010504 1.7e-48 198.0 166 62.7
Lj1P831T51 Lonicera japonica HOM05D008293 ORTHO05D010504 3.7e-48 196.8 165 61.8
Solyc07g062547.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 1.8e-47 194.5 167 61.1
MD10G1199100 Malus domestica HOM05D008293 ORTHO05D010504 3.8e-45 186.8 171 57.9
AagrBONN_evm.TU.Sc2ySwM_344.893 Anthoceros agrestis HOM05D008293 ORTHO05D010504 8.8e-42 175.6 144 58.3
Actinidia35215 Actinidia chinensis HOM05D008293 ORTHO05D010504 1.2e-27 128.6 272 38.2
SEGI_30761 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 2.3e-26 124.4 135 46.7
Ca_29048_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 1.3e-16 92.0 102 42.2
Sopen06g001050 Solanum pennellii HOM05D008293 ORTHO05D023155 3.1e-10 70.9 67 53.7
Manes.05G046900 Manihot esculenta HOM05D003566 ORTHO05D005288 6.8e-10 69.7 389 25.4
AagrBONN_evm.TU.Sc2ySwM_117.2264 Anthoceros agrestis HOM05D003566 ORTHO05D005288 4.4e-09 67.0 368 26.1
RcHm_v2.0_Chr5g0030641 Rosa chinensis HOM05D008293 ORTHO05D010504 1.3e-08 65.5 67 49.3
Sc23g0003670 Simmondsia chinensis HOM05D003566 ORTHO05D005288 1.4e-07 62.0 347 24.5
Pp3c20_17090 Physcomitrium patens HOM05D003566 ORTHO05D005288 1.9e-07 61.6 407 23.6
HPP92_020661 Vanilla planifolia HOM05D003566 ORTHO05D005288 4.1e-07 60.5 388 23.7
QL08p052732 Quercus lobata HOM05D003566 ORTHO05D005288 5.4e-07 60.1 386 23.3
SEGI_40959 Sequoiadendron giganteum HOM05D008293 ORTHO05D386060 7.8e-06 56.2 57 47.4


User provided reference genes

Program Settings