Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G108700 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-97 359.0 172 100.0
Thecc.07G108400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-60 236.5 112 96.4
Gohir.A01G056300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.3e-42 174.1 121 68.6
Gohir.D01G042900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.3e-42 174.1 121 68.6
Gorai.002G061900 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.3e-42 174.1 121 68.6
Gohir.A01G056400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.3e-37 158.3 121 62.8
Thecc.07G108500 Theobroma cacao HOM05D009888 ORTHO05D001895 1.3e-32 143.7 110 61.8
COL.COLO4_17587 Corchorus olitorius HOM05D009888 ORTHO05D001895 2.5e-31 139.4 113 61.9
Thecc.07G108200 Theobroma cacao HOM05D009888 ORTHO05D001895 5.3e-29 131.7 106 59.4
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 9.0e-29 131.0 113 58.4
Thecc.07G108300 Theobroma cacao HOM05D009888 ORTHO05D001895 1.2e-28 130.6 110 59.1
COL.COLO4_17180 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.5e-28 128.6 110 58.2
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.5e-18 95.1 108 44.4
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.5e-18 95.1 108 44.4
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.4e-18 94.4 108 43.5
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 3.6e-17 92.4 116 44.8
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.1e-16 88.6 111 42.3
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-15 85.9 111 41.4
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-14 83.2 111 39.6
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.8e-14 82.0 114 39.5
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-13 80.5 111 39.6
Potri.003G011250 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.1e-13 79.3 114 37.7
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 3.1e-13 79.3 111 38.7
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.1e-13 79.3 116 38.8
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.1e-13 79.0 112 32.1
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.3e-13 78.6 112 35.7
Sabra03G0006600 Salix brachista HOM05D009888 ORTHO05D001895 5.3e-13 78.6 109 40.4
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.9e-13 78.2 112 32.1
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.9e-13 78.2 112 32.1
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-12 77.4 114 36.8
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-12 77.0 113 38.1
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 2.6e-12 76.3 109 33.0
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.9e-12 75.1 116 33.6
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 7.7e-12 74.7 112 34.8
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 1.7e-11 73.6 117 37.6
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 1.7e-11 73.6 108 35.2
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.9e-11 72.8 112 37.5
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.8e-11 72.4 116 36.2
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.0e-11 72.0 113 36.3
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.0e-11 72.0 113 36.3
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 5.0e-11 72.0 108 34.3
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.5e-11 71.6 114 34.2
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 1.1e-10 70.9 108 42.6
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 1.4e-10 70.5 117 31.6
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-10 70.1 109 31.2
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 5.5e-10 68.6 94 40.4
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.2e-10 68.2 115 34.8
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 9.4e-10 67.8 108 35.2
Gohir.A04G133401 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-09 67.4 107 35.5
Atru.chr6.1076 Acer truncatum HOM05D008886 ORTHO05D001895 1.6e-09 67.0 108 38.9
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-09 67.0 109 29.4
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-09 67.0 91 38.5
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 2.1e-09 66.6 105 34.3
Potri.011G005601 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.1e-09 66.6 115 34.8
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 2.7e-09 66.2 109 35.8
Potri.004G221300 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.6e-09 65.9 107 34.6
Potri.011G006050 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.6e-09 65.9 115 33.0
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.7e-09 65.5 116 32.8
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 4.7e-09 65.5 111 36.9
Sabra01G0167100 Salix brachista HOM05D008886 ORTHO05D001895 4.7e-09 65.5 107 32.7
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.0e-08 64.3 108 28.7
Gohir.D04G176540 Gossypium hirsutum HOM05D002599 ORTHO05D036100 1.4e-08 63.9 108 35.2
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 1.4e-08 63.9 105 31.4
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.8e-08 63.5 105 31.4
Gohir.D04G176456 Gossypium hirsutum HOM05D002599 ORTHO05D036100 1.8e-08 63.5 108 34.3
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.8e-08 63.5 116 34.5
Gorai.012G168500 Gossypium raimondii HOM05D002599 ORTHO05D036100 2.3e-08 63.2 108 35.2
Potri.011G005300 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.3e-08 63.2 115 32.2
Sabra09G0045600 Salix brachista HOM05D008886 ORTHO05D001895 2.3e-08 63.2 109 31.2
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 2.3e-08 63.2 136 28.7
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-08 62.8 108 32.4
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.0e-08 62.8 109 33.0
Atru.chr3.613 Acer truncatum HOM05D002599 ORTHO05D001895 3.9e-08 62.4 151 33.1
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-08 62.4 104 29.8
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-08 62.4 121 29.8
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 5.2e-08 62.0 105 31.4
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.2e-08 62.0 104 30.8
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.8e-08 61.2 101 31.7
Gorai.012G167800 Gossypium raimondii HOM05D002599 ORTHO05D012670 8.8e-08 61.2 94 34.0
Manes.07G020600 Manihot esculenta HOM05D008886 ORTHO05D001895 8.8e-08 61.2 109 29.4
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 8.8e-08 61.2 115 35.7
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-07 60.8 108 31.5
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.1e-07 60.8 90 36.7
Potri.004G011000 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.5e-07 60.5 115 32.2
Manes.10G121100 Manihot esculenta HOM05D009888 ORTHO05D001895 2.0e-07 60.1 115 30.4
Thecc.02G023200 Theobroma cacao HOM05D002599 ORTHO05D012670 2.0e-07 60.1 136 25.7
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-07 59.7 108 33.3
Atru.chr2.68 Acer truncatum HOM05D002599 ORTHO05D001895 3.3e-07 59.3 106 33.0
Potri.003G021250 Populus trichocarpa HOM05D009888 ORTHO05D001895 3.3e-07 59.3 110 30.0
Sabra03G0007500 Salix brachista HOM05D009888 ORTHO05D001895 3.3e-07 59.3 111 31.5
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 3.3e-07 59.3 136 27.2
Gohir.D04G176250 Gossypium hirsutum HOM05D002599 ORTHO05D012670 4.4e-07 58.9 92 33.7
Sabra01G0167200 Salix brachista HOM05D008886 ORTHO05D001895 4.4e-07 58.9 105 30.5
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-07 58.5 108 27.8
Gohir.D04G176066 Gossypium hirsutum HOM05D002599 ORTHO05D047328 5.7e-07 58.5 106 34.0
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-07 58.5 108 27.8
Gorai.012G167600 Gossypium raimondii HOM05D002599 ORTHO05D047328 5.7e-07 58.5 106 34.0
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.7e-07 58.5 108 27.8
Atru.chr3.612 Acer truncatum HOM05D002599 ORTHO05D001895 7.4e-07 58.2 114 35.1
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 7.4e-07 58.2 94 37.2
Gorai.012G168100 Gossypium raimondii HOM05D002599 ORTHO05D036187 9.7e-07 57.8 105 31.4
Prupe.8G119000 Prunus persica HOM05D018000 ORTHO05D017022 9.7e-07 57.8 108 33.3
Thecc.02G022600 Theobroma cacao HOM05D002599 ORTHO05D012670 9.7e-07 57.8 136 25.7
Gorai.012G169400 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.3e-06 57.4 108 33.3
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.7e-06 57.0 104 28.8
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 2.2e-06 56.6 111 32.4
Atru.chr2.65 Acer truncatum HOM05D002599 ORTHO05D001895 2.2e-06 56.6 116 31.9
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-06 56.6 112 33.9
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 2.2e-06 56.6 98 30.6
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 2.2e-06 56.6 108 25.9
Gohir.D04G176526 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-06 56.2 105 29.5
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 2.8e-06 56.2 111 28.8
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 3.7e-06 55.8 94 34.0
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 3.7e-06 55.8 94 34.0
Atru.chr4.3203 Acer truncatum HOM05D002599 ORTHO05D001895 3.7e-06 55.8 94 34.0
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.7e-06 55.8 120 30.8
Manes.10G125112 Manihot esculenta HOM05D009888 ORTHO05D001895 3.7e-06 55.8 107 29.0
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.7e-06 55.8 93 32.3
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 3.7e-06 55.8 114 31.6
Sabra11G0005100 Salix brachista HOM05D008886 ORTHO05D001895 3.7e-06 55.8 115 28.7
Sabra11G0005400 Salix brachista HOM05D008886 ORTHO05D001895 6.3e-06 55.1 115 28.7
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 6.3e-06 55.1 90 36.7
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.2e-06 54.7 91 35.2
Gorai.012G168900 Gossypium raimondii HOM05D002599 ORTHO05D047810 8.2e-06 54.7 105 33.3
Sabra11G0004400 Salix brachista HOM05D008886 ORTHO05D001895 8.2e-06 54.7 115 27.8


User provided reference genes

Program Settings