Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G108500 Theobroma cacao HOM05D009888 ORTHO05D001895 1.4e-68 262.7 121 100.0
Thecc.07G108200 Theobroma cacao HOM05D009888 ORTHO05D001895 2.3e-55 218.8 120 83.3
Thecc.07G108300 Theobroma cacao HOM05D009888 ORTHO05D001895 9.8e-46 186.8 121 76.0
COL.COLO4_17180 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.6e-43 179.5 123 69.1
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.3e-42 176.4 124 71.0
Gohir.A01G056300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-39 165.6 122 65.6
COL.COLO4_17587 Corchorus olitorius HOM05D009888 ORTHO05D001895 1.2e-38 163.3 124 66.9
Gohir.D01G042900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-38 161.0 122 63.9
Gorai.002G061900 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.7e-38 161.0 122 63.9
Gohir.A01G056400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.7e-35 152.1 122 60.7
Thecc.07G108400 Theobroma cacao HOM05D002599 ORTHO05D001895 5.9e-35 151.0 123 59.3
Thecc.07G108700 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-33 145.2 110 61.8
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-18 95.5 114 42.1
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.0e-18 95.5 114 42.1
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.6e-18 94.0 113 40.7
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-14 83.6 115 38.3
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-14 83.6 115 38.3
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.2e-14 83.6 115 38.3
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 1.5e-14 83.2 118 41.5
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 3.4e-14 82.0 114 33.3
Manes.07G019800 Manihot esculenta HOM05D009888 ORTHO05D001895 9.8e-14 80.5 114 32.5
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-13 79.7 113 36.3
Potri.003G011875 Populus trichocarpa HOM05D009888 ORTHO05D001895 6.4e-13 77.8 114 36.0
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.3e-13 77.4 113 33.6
Manes.10G121100 Manihot esculenta HOM05D009888 ORTHO05D001895 3.2e-12 75.5 114 32.5
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.1e-12 75.1 119 35.3
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-11 73.6 116 33.6
COL.COLO4_17753 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.1e-11 72.8 112 33.9
Potri.003G011250 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-11 72.8 119 36.1
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 2.7e-11 72.4 118 32.2
Sabra03G0006600 Salix brachista HOM05D009888 ORTHO05D001895 3.5e-11 72.0 114 38.6
Sabra03G0007700 Salix brachista HOM05D009888 ORTHO05D001895 3.5e-11 72.0 117 34.2
Potri.003G014750 Populus trichocarpa HOM05D009888 ORTHO05D001895 4.6e-11 71.6 114 33.3
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-10 70.5 118 32.2
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-10 70.5 118 32.2
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-10 70.1 119 37.8
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 2.3e-10 69.3 118 32.2
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.6e-10 67.8 101 36.6
Sabra03G0007500 Salix brachista HOM05D009888 ORTHO05D001895 8.6e-10 67.4 117 34.2
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 8.6e-10 67.4 113 32.7
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-09 67.0 118 33.9
Sabra03G0007000 Salix brachista HOM05D009888 ORTHO05D001895 1.1e-09 67.0 89 42.7
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-09 66.6 118 33.9
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.3e-09 65.5 121 30.6
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-09 65.5 113 36.3
Sabra15G0012600 Salix brachista HOM05D002599 ORTHO05D001895 4.3e-09 65.1 107 33.6
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 7.3e-09 64.3 113 31.9
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 9.5e-09 63.9 110 34.5
Manes.10G124912 Manihot esculenta HOM05D002599 ORTHO05D001895 9.5e-09 63.9 114 34.2
Sabra03G0007300 Salix brachista HOM05D009888 ORTHO05D001895 9.5e-09 63.9 117 31.6
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-08 63.5 93 36.6
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 1.6e-08 63.2 90 38.9
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 2.1e-08 62.8 102 38.2
Manes.07G021700 Manihot esculenta HOM05D002599 ORTHO05D001895 2.8e-08 62.4 110 35.5
Sabra01G0167100 Salix brachista HOM05D008886 ORTHO05D001895 2.8e-08 62.4 105 29.5
Sabra03G0006900 Salix brachista HOM05D009888 ORTHO05D001895 3.6e-08 62.0 118 33.1
Gohir.D01G190550 Gossypium hirsutum HOM05D002599 ORTHO05D025152 4.7e-08 61.6 106 34.0
Gorai.002G234300 Gossypium raimondii HOM05D002599 ORTHO05D025152 4.7e-08 61.6 106 34.0
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 6.2e-08 61.2 98 34.7
Sabra09G0045600 Salix brachista HOM05D008886 ORTHO05D001895 6.2e-08 61.2 106 28.3
COL.COLO4_11750 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.1e-08 60.8 123 35.0
Gohir.A01G200500 Gossypium hirsutum HOM05D002599 ORTHO05D025152 8.1e-08 60.8 106 33.0
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.1e-08 60.8 116 34.5
Sabra03G0007600 Salix brachista HOM05D009888 ORTHO05D001895 8.1e-08 60.8 89 39.3
Sabra03G0007200 Salix brachista HOM05D009888 ORTHO05D001895 1.4e-07 60.1 117 32.5
Atru.chr3.612 Acer truncatum HOM05D002599 ORTHO05D001895 2.3e-07 59.3 79 39.2
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 3.1e-07 58.9 118 33.1
Manes.07G021600 Manihot esculenta HOM05D002599 ORTHO05D001895 5.2e-07 58.2 110 33.6
Manes.10G121200 Manihot esculenta HOM05D009888 ORTHO05D001895 6.8e-07 57.8 77 35.1
Atru.chr2.66 Acer truncatum HOM05D002599 ORTHO05D001895 8.9e-07 57.4 83 34.9
Manes.02G167801 Manihot esculenta HOM05D009888 ORTHO05D001895 8.9e-07 57.4 88 36.4
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.5e-06 56.6 104 28.8
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 2.0e-06 56.2 104 28.8
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 2.6e-06 55.8 113 31.0
Atru.chr3.613 Acer truncatum HOM05D002599 ORTHO05D001895 3.4e-06 55.5 109 32.1
Potri.004G011000 Populus trichocarpa HOM05D008886 ORTHO05D001895 5.8e-06 54.7 113 32.7
Potri.004G221300 Populus trichocarpa HOM05D008886 ORTHO05D001895 9.9e-06 53.9 105 27.6
Sabra01G0167200 Salix brachista HOM05D008886 ORTHO05D001895 9.9e-06 53.9 93 28.0
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 9.9e-06 53.9 102 30.4


User provided reference genes

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