Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G108200 Theobroma cacao HOM05D009888 ORTHO05D001895 1.4e-209 732.6 350 100.0
Thecc.07G108500 Theobroma cacao HOM05D009888 ORTHO05D001895 6.7e-55 218.8 120 83.3
Thecc.07G108300 Theobroma cacao HOM05D009888 ORTHO05D001895 1.4e-44 184.5 120 75.8
COL.COLO4_17180 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.2e-37 160.6 121 64.5
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.1e-36 158.3 123 66.7
COL.COLO4_17587 Corchorus olitorius HOM05D009888 ORTHO05D001895 5.3e-36 156.0 123 65.0
Gohir.D01G042900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-35 154.1 120 63.3
Gorai.002G061900 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.0e-35 154.1 120 63.3
Gohir.A01G056300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.5e-34 149.1 120 61.7
Thecc.07G108400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.0e-31 140.2 122 56.6
Gohir.A01G056400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.5e-30 135.6 120 56.7
Thecc.07G108700 Theobroma cacao HOM05D002599 ORTHO05D001895 4.8e-29 132.9 106 59.4
Thecc.01G275500 Theobroma cacao HOM05D009888 ORTHO05D407961 1.3e-18 98.2 60 81.7
Thecc.06G052100 Theobroma cacao HOM05D000570 ORTHO05D001174 2.8e-16 90.5 162 47.5
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.8e-15 85.9 113 38.1
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.8e-15 85.9 113 38.1
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-14 85.1 120 38.3
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-14 84.7 113 38.1
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.8e-14 82.0 115 38.3
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.8e-14 82.0 115 38.3
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.8e-14 82.0 115 38.3
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-13 81.6 115 39.1
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 2.2e-13 80.9 118 40.7
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-13 80.5 116 40.5
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.9e-13 79.7 117 37.6
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.3e-13 79.0 114 39.5
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-12 78.6 113 34.5
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-12 78.6 116 39.7
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 1.4e-12 78.2 117 33.3
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-12 77.8 113 35.4
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 1.8e-12 77.8 115 37.4
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.4e-12 77.4 115 36.5
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.2e-12 77.0 113 33.6
Thecc.07G161500 Theobroma cacao HOM05D000056 ORTHO05D000019 3.2e-12 77.0 43 81.4
Manes.07G019800 Manihot esculenta HOM05D009888 ORTHO05D001895 4.1e-12 76.6 117 32.5
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.1e-12 76.6 116 39.7
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.4e-12 76.3 116 35.3
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-11 75.1 111 39.6
Potri.003G011250 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-11 74.7 118 37.3
Sabra03G0006600 Salix brachista HOM05D009888 ORTHO05D001895 2.7e-11 73.9 114 37.7
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.5e-11 73.6 113 37.2
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.8e-11 72.4 113 36.3
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 7.8e-11 72.4 120 31.7
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-10 70.9 101 37.6
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 2.9e-10 70.5 120 30.0
Potri.003G011875 Populus trichocarpa HOM05D009888 ORTHO05D001895 5.0e-10 69.7 114 33.3
Potri.015G016700 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.0e-10 69.7 113 35.4
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 6.6e-10 69.3 112 38.4
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 8.6e-10 68.9 113 37.2
Manes.10G125112 Manihot esculenta HOM05D009888 ORTHO05D001895 1.5e-09 68.2 114 29.8
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 1.5e-09 68.2 120 30.0
Manes.10G121100 Manihot esculenta HOM05D009888 ORTHO05D001895 1.9e-09 67.8 114 29.8
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-09 67.8 119 34.5
Sabra03G0007700 Salix brachista HOM05D009888 ORTHO05D001895 3.3e-09 67.0 117 32.5
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 3.3e-09 67.0 120 30.0
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 4.3e-09 66.6 111 34.2
COL.COLO4_17753 Corchorus olitorius HOM05D002599 ORTHO05D001895 9.5e-09 65.5 113 33.6
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.5e-09 65.5 115 38.3
Thecc.03G109100 Theobroma cacao HOM05D000856 ORTHO05D408428 9.5e-09 65.5 66 62.1
Potri.003G021250 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.6e-08 64.7 116 30.2
Potri.004G221600 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.6e-08 64.7 108 33.3
Sabra15G0012600 Salix brachista HOM05D002599 ORTHO05D001895 1.6e-08 64.7 115 29.6
Sabra03G0007500 Salix brachista HOM05D009888 ORTHO05D001895 2.8e-08 63.9 117 31.6
Potri.003G014750 Populus trichocarpa HOM05D009888 ORTHO05D001895 3.6e-08 63.5 114 30.7
Potri.003G013026 Populus trichocarpa HOM05D009888 ORTHO05D001895 4.7e-08 63.2 116 29.3
Potri.003G016733 Populus trichocarpa HOM05D009888 ORTHO05D001895 8.0e-08 62.4 103 32.0
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 2.3e-07 60.8 104 34.6
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-07 60.8 116 34.5
Sabra03G0007000 Salix brachista HOM05D009888 ORTHO05D001895 4.0e-07 60.1 89 38.2
Sabra03G0007300 Salix brachista HOM05D009888 ORTHO05D001895 5.2e-07 59.7 117 30.8
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 5.2e-07 59.7 84 38.1
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 6.8e-07 59.3 112 33.0
Atru.chr6.1076 Acer truncatum HOM05D008886 ORTHO05D001895 1.2e-06 58.5 108 33.3
Sabra01G0167700 Salix brachista HOM05D008886 ORTHO05D001895 1.2e-06 58.5 108 31.5
Thecc.04G106700 Theobroma cacao HOM05D000478 ORTHO05D000345 1.2e-06 58.5 38 78.9
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 1.5e-06 58.2 84 38.1
Manes.07G021700 Manihot esculenta HOM05D002599 ORTHO05D001895 1.5e-06 58.2 113 35.4
Potri.003G013601 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.5e-06 58.2 88 35.2
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.0e-06 57.8 88 39.8
Manes.07G020700 Manihot esculenta HOM05D016843 ORTHO05D001895 2.0e-06 57.8 108 31.5
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-06 57.8 103 28.2
Sabra01G0167100 Salix brachista HOM05D008886 ORTHO05D001895 2.0e-06 57.8 104 28.8
Sabra03G0007600 Salix brachista HOM05D009888 ORTHO05D001895 2.0e-06 57.8 89 37.1
Sabra09G0045600 Salix brachista HOM05D008886 ORTHO05D001895 4.4e-06 56.6 111 27.0
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 9.8e-06 55.5 112 28.6
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 9.8e-06 55.5 112 28.6
Sabra03G0007200 Salix brachista HOM05D009888 ORTHO05D001895 9.8e-06 55.5 117 29.9


User provided reference genes

Program Settings