Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 1.7e-284 981.9 452 100.0
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 3.2e-267 924.5 451 93.1
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 7.1e-267 923.3 451 93.3
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 4.6e-266 920.6 451 92.7
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 9.7e-248 859.8 435 89.2
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 5.0e-244 847.4 435 87.1
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 5.0e-244 847.4 433 88.0
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.9e-243 845.5 435 86.0
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 3.2e-243 844.7 435 88.0
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 4.2e-243 844.3 449 86.9
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 5.5e-243 844.0 435 87.1
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 2.1e-242 842.0 450 85.6
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 2.7e-242 841.6 435 87.1
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 4.6e-242 840.9 435 86.9
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.3e-241 838.6 435 87.4
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 3.9e-241 837.8 435 86.7
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 5.7e-240 833.9 451 84.5
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 1.3e-239 832.8 434 86.2
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 2.8e-239 831.6 442 84.4
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 4.8e-239 830.9 450 82.2
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 6.3e-239 830.5 451 83.4
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.4e-238 829.3 434 85.9
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 1.4e-238 829.3 435 85.7
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 2.4e-238 828.6 435 85.5
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 3.1e-238 828.2 470 81.9
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 5.3e-238 827.4 435 84.6
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 5.3e-238 827.4 434 86.4
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 2.0e-237 825.5 436 84.9
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 3.4e-237 824.7 435 84.4
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 4.5e-237 824.3 434 86.2
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 5.9e-237 823.9 451 83.1
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 1.0e-236 823.2 433 85.2
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.0e-236 823.2 438 84.9
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 1.3e-236 822.8 435 84.6
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 1.7e-236 822.4 432 85.9
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 2.2e-236 822.0 434 85.0
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 5.0e-236 820.8 435 84.1
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 4.2e-235 817.8 434 84.6
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 7.2e-235 817.0 450 81.3
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 9.4e-235 816.6 434 84.8
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 1.6e-234 815.8 432 85.9
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 7.9e-234 813.5 432 85.6
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.0e-233 813.1 448 81.9
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 2.3e-233 812.0 433 85.0
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 3.0e-233 811.6 432 85.0
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 3.0e-233 811.6 435 83.4
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 3.9e-233 811.2 432 85.2
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 3.9e-233 811.2 455 81.1
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 5.2e-233 810.8 435 84.4
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 5.2e-233 810.8 443 81.7
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 8.8e-233 810.1 432 84.5
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 8.8e-233 810.1 432 84.5
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 1.1e-232 809.7 433 85.2
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.1e-232 809.7 454 81.5
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 7.4e-232 807.0 433 84.3
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 7.4e-232 807.0 453 80.6
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 9.7e-232 806.6 433 84.5
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 1.3e-231 806.2 432 84.5
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.7e-231 805.8 438 82.9
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 2.8e-231 805.1 432 84.3
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 2.8e-231 805.1 432 83.1
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 3.7e-231 804.7 433 84.1
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 4.8e-231 804.3 433 83.6
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 6.3e-231 803.9 465 79.6
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 8.2e-231 803.5 432 84.5
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 8.2e-231 803.5 433 83.8
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 1.1e-230 803.1 432 83.6
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 9.1e-230 800.0 433 84.1
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 9.1e-230 800.0 433 84.1
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 9.1e-230 800.0 433 84.1
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 1.2e-229 799.7 433 83.8
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 3.5e-229 798.1 430 83.3
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.3e-228 796.2 432 82.4
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 5.0e-228 794.3 471 76.9
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 5.0e-228 794.3 471 76.9
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 6.5e-228 793.9 429 83.4
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 1.5e-227 792.7 441 80.7
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.5e-227 792.0 461 80.0
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 9.4e-227 790.0 432 81.7
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 3.6e-226 788.1 433 82.2
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.4e-225 786.2 441 80.7
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.3e-225 785.4 461 77.7
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 1.4e-222 776.2 440 80.5
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 1.8e-222 775.8 440 80.2
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.4e-222 775.4 433 79.2
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.8e-217 759.2 452 76.5
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 3.7e-215 751.5 442 76.7
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 3.7e-215 751.5 448 75.4
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 6.3e-215 750.7 480 72.9
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 7.7e-213 743.8 379 89.7
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 6.5e-212 740.7 435 76.6
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 2.1e-210 735.7 434 77.6
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 2.8e-210 735.3 380 87.4
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 8.3e-207 723.8 456 76.8
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 8.9e-201 703.7 397 79.3
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 2.0e-197 692.6 433 72.3
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 4.0e-193 678.3 420 72.1
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 2.0e-192 676.0 432 73.6
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 1.3e-191 673.3 436 70.0
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.2e-183 646.0 407 74.7
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 1.9e-179 632.9 434 66.8
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 5.2e-169 598.2 300 89.0
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 3.4e-168 595.5 321 82.9
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.4e-161 573.5 294 86.4
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 2.4e-161 572.8 438 62.3
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 2.0e-160 569.7 377 72.1
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 2.4e-158 562.8 454 60.1
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 1.2e-152 543.9 280 86.8
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 4.2e-134 482.3 276 78.6
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.4e-84 317.8 196 77.0
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 1.2e-75 288.1 158 79.7
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.2e-73 278.5 178 72.5
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 1.6e-72 277.7 363 47.1
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 6.8e-68 262.3 132 86.4
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 7.5e-67 258.8 133 85.7
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 6.0e-64 249.2 216 62.0
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 4.3e-62 243.0 135 81.5
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 9.5e-62 241.9 216 55.6
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.8e-61 240.4 120 90.0
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 1.5e-59 234.6 134 76.9
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.1e-48 197.6 119 77.3
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 1.3e-47 194.9 249 49.4
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.7e-47 194.5 116 72.4
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.3e-33 145.6 84 75.0
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 1.1e-25 122.1 181 40.9
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 2.7e-24 117.5 60 85.0
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 7.9e-24 115.9 68 72.1
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 5.1e-23 113.2 90 57.8
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 4.1e-20 103.6 61 75.4
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.5e-19 101.7 105 50.5
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 4.2e-17 93.6 68 64.7
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 4.5e-11 73.6 55 63.6
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 1.6e-08 65.1 55 58.2


User provided reference genes

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