Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 1.9e-121 439.1 216 100.0
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 4.2e-92 341.7 200 83.0
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 5.4e-87 324.7 200 79.0
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 1.7e-85 319.7 200 77.5
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 5.0e-85 318.2 200 77.0
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 5.2e-50 201.8 180 53.3
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.2e-49 200.7 201 50.7
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 5.8e-49 198.4 203 49.8
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 1.1e-47 194.1 199 47.2
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 3.2e-47 192.6 184 50.5
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 2.1e-46 189.9 183 51.9
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 2.1e-46 189.9 189 52.4
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 6.0e-46 188.3 181 53.6
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 1.3e-45 187.2 181 54.1
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 5.1e-45 185.3 180 50.6
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 3.6e-43 179.1 182 48.4
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 4.7e-43 178.7 182 49.5
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 1.4e-42 177.2 188 47.9
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 1.4e-42 177.2 183 50.3
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 4.0e-42 175.6 182 51.1
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 1.2e-41 174.1 211 42.2
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 2.6e-41 172.9 182 51.1
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 2.6e-41 172.9 183 51.4
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 9.9e-41 171.0 188 46.3
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 9.9e-41 171.0 188 46.3
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 9.9e-41 171.0 182 50.0
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 9.9e-41 171.0 181 49.7
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.3e-40 170.6 206 47.1
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 1.3e-40 170.6 219 42.0
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 1.7e-40 170.2 207 45.4
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 2.9e-40 169.5 183 50.8
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 2.9e-40 169.5 184 46.7
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 2.9e-40 169.5 182 46.7
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 3.8e-40 169.1 193 47.2
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 6.4e-40 168.3 186 48.4
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 6.4e-40 168.3 219 42.5
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 6.4e-40 168.3 207 45.4
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 1.9e-39 166.8 183 49.7
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 2.4e-39 166.4 200 45.5
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 3.2e-39 166.0 194 46.4
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 9.3e-39 164.5 188 44.1
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 1.6e-38 163.7 194 45.9
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 2.7e-38 162.9 198 43.4
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 2.7e-38 162.9 182 45.6
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 3.5e-38 162.5 203 41.4
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 4.6e-38 162.2 208 43.3
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 7.8e-38 161.4 217 41.5
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 1.0e-37 161.0 187 46.5
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 1.9e-36 156.8 183 47.5
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 3.3e-36 156.0 209 42.6
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 7.3e-36 154.8 183 45.9
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 1.3e-35 154.1 182 42.9
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 2.8e-35 152.9 188 44.7
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 5.3e-34 148.7 187 42.2
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 4.5e-33 145.6 176 43.8
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 4.5e-33 145.6 191 43.5
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 1.3e-32 144.1 159 45.3
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 2.2e-32 143.3 189 42.9
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 2.9e-32 142.9 184 40.8
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 3.8e-32 142.5 220 40.0
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 4.9e-32 142.1 186 41.9
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 5.4e-31 138.7 176 40.9
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 9.3e-31 137.9 188 41.0
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 1.2e-30 137.5 162 45.1
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 1.2e-30 137.5 211 38.9
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 1.6e-30 137.1 191 39.8
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 1.6e-30 137.1 184 40.2
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 2.7e-30 136.3 187 38.0
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 7.9e-30 134.8 180 41.1
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 1.8e-29 133.7 208 39.4
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 5.1e-29 132.1 195 38.5
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 1.3e-27 127.5 172 39.5
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 8.1e-27 124.8 164 41.5
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 5.3e-26 122.1 189 38.6
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 6.9e-26 121.7 189 38.1
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 9.0e-26 121.3 189 38.1
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 1.2e-25 120.9 192 35.4
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 2.6e-25 119.8 176 37.5
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 3.4e-25 119.4 176 37.5
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 3.4e-25 119.4 192 34.9
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 4.5e-25 119.0 192 34.9
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 7.6e-25 118.2 176 37.5
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 1.3e-24 117.5 176 36.9
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 1.3e-24 117.5 176 36.9
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 2.9e-24 116.3 176 35.8
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 3.8e-24 115.9 242 29.8
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 4.9e-24 115.5 174 38.5
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 8.4e-24 114.8 176 36.4
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 3.2e-23 112.8 174 36.8
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 3.5e-22 109.4 108 50.0
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 1.8e-21 107.1 177 35.0
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 1.8e-21 107.1 176 36.4
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 1.1e-20 104.4 185 33.0
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 1.5e-20 104.0 202 32.2
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 4.3e-20 102.4 183 34.4
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 5.6e-20 102.1 127 42.5
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 2.4e-18 96.7 177 32.2
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 9.0e-18 94.7 158 31.0
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.2e-17 94.4 111 45.0
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 2.5e-15 86.7 184 32.1
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 4.2e-15 85.9 102 43.1
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 4.6e-14 82.4 184 29.9
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 1.0e-13 81.3 155 27.1
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.1e-12 77.8 168 31.0
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 2.1e-11 73.6 66 53.0
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 2.4e-10 70.1 157 30.6
BraA09t38198Z Brassica rapa HOM05D004843 ORTHO05D005833 6.5e-08 62.0 70 48.6
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 6.5e-08 62.0 231 24.2
A09p55300 Brassica napus HOM05D004843 ORTHO05D005833 3.2e-07 59.7 70 47.1
MBI02_g30879_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 1.2e-06 57.8 75 45.3
unitig_26.g10043 Utricularia gibba HOM05D004843 ORTHO05D005833 2.1e-06 57.0 91 38.5
Aqoxy7G02744 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 6.1e-06 55.5 91 38.5


User provided reference genes

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