Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 1.1e-67 260.0 142 100.0
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.0e-62 243.4 142 94.4
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.9e-53 212.6 142 84.5
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.9e-48 196.1 142 78.2
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 7.2e-48 194.1 142 77.5
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 7.2e-48 194.1 142 77.5
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 6.7e-46 187.6 141 73.8
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 3.7e-44 181.8 143 72.7
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 4.8e-44 181.4 142 71.8
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 8.2e-44 180.6 143 71.3
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 3.1e-43 178.7 142 71.1
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.3e-43 177.9 134 74.6
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 6.9e-43 177.6 145 71.0
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.5e-42 176.4 142 69.0
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.5e-40 169.1 130 72.3
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 7.2e-40 167.5 140 68.6
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.7e-39 165.6 134 72.4
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 2.7e-39 165.6 144 66.0
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.0e-38 163.7 132 65.9
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 3.9e-38 161.8 140 66.4
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 1.5e-37 159.8 143 66.4
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 3.3e-37 158.7 143 65.0
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 1.3e-36 156.8 142 63.4
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.7e-36 156.4 142 64.8
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 2.2e-36 156.0 143 65.7
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 2.8e-36 155.6 137 65.0
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 3.7e-36 155.2 142 64.1
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 8.2e-36 154.1 142 63.4
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 1.4e-35 153.3 137 64.2
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 9.1e-35 150.6 143 61.5
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.6e-34 149.8 132 61.4
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 2.0e-34 149.4 126 65.9
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 3.5e-34 148.7 117 70.1
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 3.5e-34 148.7 142 60.6
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 4.5e-34 148.3 138 62.3
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 5.9e-34 147.9 147 61.9
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 5.9e-34 147.9 132 61.4
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 5.9e-34 147.9 143 60.8
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 7.7e-34 147.5 117 67.5
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 1.0e-33 147.1 128 63.3
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 1.3e-33 146.7 134 64.9
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.7e-33 146.4 142 59.9
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.7e-33 146.4 142 59.9
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 1.7e-33 146.4 128 64.1
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 1.7e-33 146.4 139 57.6
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.8e-33 145.2 132 60.6
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 3.8e-33 145.2 141 58.9
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 5.0e-33 144.8 135 60.7
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 6.5e-33 144.4 142 62.0
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 6.5e-33 144.4 135 62.2
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 8.5e-33 144.1 132 62.9
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 8.5e-33 144.1 142 60.6
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 8.5e-33 144.1 132 62.1
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 1.1e-32 143.7 142 62.7
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 1.5e-32 143.3 132 63.6
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 1.5e-32 143.3 142 56.3
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 2.5e-32 142.5 122 63.9
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 5.5e-32 141.4 127 64.6
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.6e-31 139.8 127 60.6
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 2.1e-31 139.4 125 64.0
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 2.1e-31 139.4 131 60.3
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 2.1e-31 139.4 131 60.3
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 2.7e-31 139.0 142 59.2
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 3.6e-31 138.7 121 62.0
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 3.6e-31 138.7 143 59.4
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.6e-31 138.7 142 58.5
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.7e-31 138.3 143 58.7
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 6.1e-31 137.9 111 64.9
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 6.1e-31 137.9 143 59.4
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 1.0e-30 137.1 131 61.1
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.4e-30 136.7 143 59.4
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 1.8e-30 136.3 126 59.5
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 2.3e-30 136.0 132 59.1
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 2.3e-30 136.0 132 59.1
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 6.7e-30 134.4 139 54.0
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 6.7e-30 134.4 132 56.1
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 1.2e-29 133.7 128 61.7
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 1.2e-29 133.7 141 55.3
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 2.6e-29 132.5 136 55.1
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 2.6e-29 132.5 122 62.3
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 3.3e-29 132.1 139 56.8
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 4.4e-29 131.7 140 54.3
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 4.4e-29 131.7 115 63.5
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 5.7e-29 131.3 142 54.2
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 7.5e-29 131.0 142 53.5
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 7.5e-29 131.0 142 53.5
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 7.5e-29 131.0 142 53.5
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 9.7e-29 130.6 128 61.7
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 1.3e-28 130.2 141 55.3
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.3e-28 130.2 132 59.8
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.3e-28 130.2 132 59.8
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 1.7e-28 129.8 142 53.5
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 4.8e-28 128.3 106 68.9
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 6.3e-28 127.9 122 59.0
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 6.3e-28 127.9 108 65.7
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 1.4e-27 126.7 142 54.9
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 1.4e-27 126.7 137 54.0
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.6e-26 123.2 138 54.3
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 2.0e-26 122.9 132 58.3
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.3e-25 120.2 131 57.3
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 6.5e-25 117.9 143 50.3
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 7.2e-24 114.4 181 43.1
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 2.7e-23 112.5 140 50.0
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 1.8e-22 109.8 137 51.1
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 2.3e-22 109.4 144 47.2
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 1.7e-17 93.2 106 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 8.6e-17 90.9 118 44.1
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 1.5e-16 90.1 123 45.5
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 2.8e-15 85.9 62 77.4
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 2.3e-14 82.8 72 66.7
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 3.4e-13 79.0 114 43.0
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 3.4e-13 79.0 133 43.6
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 5.4e-11 71.6 54 70.4
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 3.5e-10 68.9 102 38.2
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 7.8e-10 67.8 122 39.3
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.7e-09 66.6 53 69.8
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 2.9e-09 65.9 81 51.9
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 5.0e-09 65.1 42 76.2
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 6.6e-09 64.7 86 48.8
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 6.6e-09 64.7 54 64.8
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 5.6e-08 61.6 112 36.6
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 4.7e-07 58.5 49 67.3
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 4.7e-07 58.5 47 66.0
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.0e-06 57.4 55 61.8
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 4.0e-06 55.5 115 36.5
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 5.2e-06 55.1 41 68.3
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 5.2e-06 55.1 41 68.3
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 6.8e-06 54.7 131 30.5
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 8.9e-06 54.3 38 65.8


User provided reference genes

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