Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 4.2e-114 414.8 229 100.0
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 7.7e-92 340.9 230 87.0
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 5.1e-88 328.2 227 84.1
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 2.0e-87 326.2 228 84.6
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 2.0e-87 326.2 228 84.6
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 3.3e-87 325.5 220 87.3
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 2.8e-78 295.8 232 77.6
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 7.2e-58 228.0 228 68.4
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 3.4e-55 219.2 233 64.4
Duzib170G0657 Durio zibethinus HOM05D007784 ORTHO05D008654 1.7e-54 216.9 212 69.3
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 9.1e-53 211.1 243 58.8
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 6.6e-51 204.9 235 57.9
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 1.1e-50 204.1 234 58.5
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 2.5e-50 203.0 231 59.7
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 1.6e-49 200.3 231 55.0
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 2.3e-48 196.4 232 56.0
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 4.0e-48 195.7 241 55.6
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 3.7e-46 189.1 235 57.0
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 3.7e-46 189.1 235 56.2
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 3.2e-45 186.0 239 52.3
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 5.0e-43 178.7 257 51.4
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 5.6e-42 175.3 200 65.5
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 2.0e-39 166.8 241 46.9
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 4.9e-38 162.2 238 47.9
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 4.9e-38 162.2 238 47.9
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 6.4e-38 161.8 238 49.6
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 5.4e-37 158.7 236 50.0
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 1.2e-36 157.5 238 50.0
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 6.0e-36 155.2 231 49.4
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 6.0e-36 155.2 224 52.2
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 3.0e-35 152.9 241 50.2
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 6.6e-35 151.8 234 49.1
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 6.6e-35 151.8 230 49.6
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 5.6e-34 148.7 238 47.9
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 2.8e-33 146.4 247 47.4
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 2.6e-31 139.8 235 42.1
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 2.9e-30 136.3 219 43.4
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 3.7e-30 136.0 241 44.8
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 2.4e-29 133.3 245 46.5
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 1.3e-27 127.5 221 47.1
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 1.7e-27 127.1 267 44.2
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 3.0e-27 126.3 126 65.9
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 4.3e-26 122.5 217 47.9
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 5.6e-26 122.1 224 46.4
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 1.2e-25 120.9 258 43.4
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 2.8e-25 119.8 204 44.1
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 2.8e-25 119.8 258 43.0
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 4.7e-25 119.0 226 45.1
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 6.2e-25 118.6 238 42.4
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 5.2e-24 115.5 207 44.9
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 5.2e-24 115.5 212 46.2
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 6.8e-24 115.2 207 44.9
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 1.2e-23 114.4 223 44.8
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 1.5e-23 114.0 223 46.6
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 2.0e-23 113.6 248 39.1
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 2.6e-23 113.2 227 45.4
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 2.2e-22 110.2 162 56.2
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 2.4e-21 106.7 219 44.3
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 3.2e-21 106.3 220 46.8
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 4.1e-21 105.9 236 38.6
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 5.4e-21 105.5 225 33.8
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 7.1e-21 105.1 160 50.0
Nn1g06458 Nelumbo nucifera HOM05D007784 ORTHO05D008654 1.6e-20 104.0 224 38.8
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 1.0e-19 101.3 227 38.3
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 1.7e-19 100.5 220 33.6
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 1.9e-18 97.1 200 36.5
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 1.9e-18 97.1 257 32.3
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 4.3e-18 95.9 219 37.9
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 7.3e-18 95.1 247 38.5
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 1.4e-16 90.9 229 36.2
DCAR_017127 Daucus carota HOM05D007784 ORTHO05D008654 1.8e-16 90.5 189 42.3
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 2.4e-16 90.1 256 40.2
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 2.6e-15 86.7 231 42.4
Nn1g04167 Nelumbo nucifera HOM05D007784 ORTHO05D008654 2.6e-15 86.7 220 38.6
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 5.8e-15 85.5 220 36.4
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 5.8e-15 85.5 229 29.7
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 5.8e-15 85.5 244 32.8
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 9.9e-15 84.7 272 30.1
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 1.3e-14 84.3 262 31.7
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 1.3e-14 84.3 262 31.7
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 1.3e-14 84.3 262 31.7
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 1.3e-14 84.3 271 28.8
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 2.9e-14 83.2 285 29.5
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 2.9e-14 83.2 263 30.8
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 3.8e-14 82.8 263 28.9
Sed0023140 Sechium edule HOM05D007784 ORTHO05D008654 4.9e-14 82.4 58 70.7
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 6.4e-14 82.0 268 28.7
ECA234G3343 Erigeron canadensis HOM05D007784 ORTHO05D008654 8.4e-14 81.6 218 38.1
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 1.4e-13 80.9 222 39.2
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 1.9e-13 80.5 284 27.8
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.9e-13 80.5 278 28.4
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.9e-13 80.5 218 35.8
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 2.4e-13 80.1 226 38.9
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 5.4e-13 79.0 213 39.4
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 5.4e-13 79.0 217 39.6
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 1.2e-12 77.8 216 35.2
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 1.6e-12 77.4 261 29.9
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 2.1e-12 77.0 216 33.8
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 2.7e-12 76.6 211 35.5
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 1.0e-11 74.7 208 35.6
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 1.0e-11 74.7 208 35.6
Migut.M00785 Erythranthe guttata HOM05D007784 ORTHO05D008654 1.7e-11 73.9 221 38.9
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 2.3e-11 73.6 276 30.8
Actinidia12799 Actinidia chinensis HOM05D000223 ORTHO05D000736 3.0e-11 73.2 144 47.9
Eucgr.F03301 Eucalyptus grandis HOM05D007784 ORTHO05D008654 1.3e-09 67.8 176 43.2
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 3.6e-09 66.2 76 48.7
Rhsim04G0022200 Rhododendron simsii HOM05D058066 ORTHO05D008654 3.1e-08 63.2 94 38.3
Ah.06g184500 Amaranthus hybridus HOM05D007784 ORTHO05D008654 4.0e-08 62.8 242 30.6
SalBow8G3696 Salvia bowleyana HOM05D007784 ORTHO05D008654 4.0e-08 62.8 94 48.9
DCAR_019564 Daucus carota HOM05D007784 ORTHO05D008654 1.2e-07 61.2 226 38.1
SGA_v2.0_scaffold73G24239 Striga asiatica HOM05D007784 ORTHO05D008654 9.9e-07 58.2 212 36.8
DCAR_013118 Daucus carota HOM05D007784 ORTHO05D008654 6.4e-06 55.5 82 32.9


User provided reference genes

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