Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G094100 Theobroma cacao HOM05D000058 ORTHO05D410077 2.3e-30 134.8 62 100.0
Thecc.07G105900 Theobroma cacao HOM05D000058 ORTHO05D010790 1.6e-28 128.6 62 95.2
Thecc.07G094000 Theobroma cacao HOM05D000058 ORTHO05D010790 6.8e-27 123.2 62 90.3
Thecc.07G086300 Theobroma cacao HOM05D000058 ORTHO05D010790 1.5e-26 122.1 62 88.7
Thecc.07G093800 Theobroma cacao HOM05D000058 ORTHO05D010790 2.0e-26 121.7 62 90.3
Thecc.07G086600 Theobroma cacao HOM05D000058 ORTHO05D010790 3.4e-26 120.9 62 88.7
Duzib213G0048 Durio zibethinus HOM05D000058 ORTHO05D010790 7.5e-26 119.8 62 85.5
Thecc.07G093600 Theobroma cacao HOM05D000058 ORTHO05D010790 2.4e-24 114.8 62 82.3
Thecc.07G084300 Theobroma cacao HOM05D000058 ORTHO05D010790 1.7e-22 108.6 62 75.8
Duzib235G0615 Durio zibethinus HOM05D000058 ORTHO05D010790 3.3e-21 104.4 62 72.6
Gohir.D01G049200 Gossypium hirsutum HOM05D000058 ORTHO05D010790 4.0e-19 97.4 62 67.7
Gohir.A01G062600 Gossypium hirsutum HOM05D000058 ORTHO05D010790 1.2e-18 95.9 62 66.1
Gorai.002G069000 Gossypium raimondii HOM05D000058 ORTHO05D010790 1.5e-18 95.5 62 66.1
Gohir.A01G062550 Gossypium hirsutum HOM05D000058 ORTHO05D010790 2.2e-17 91.7 60 61.7
Duzib160G0932 Durio zibethinus HOM05D000058 ORTHO05D010790 2.9e-17 91.3 62 62.9
Thecc.07G087100 Theobroma cacao HOM05D000058 ORTHO05D408972 4.1e-16 87.4 45 86.7
Thecc.07G085000 Theobroma cacao HOM05D000058 ORTHO05D010790 5.4e-16 87.0 43 86.0
Gohir.D01G049100 Gossypium hirsutum HOM05D000058 ORTHO05D010790 7.0e-16 86.7 60 61.7
Gorai.002G068900 Gossypium raimondii HOM05D000058 ORTHO05D010790 7.0e-16 86.7 60 61.7
Gohir.A04G005250 Gossypium hirsutum HOM05D000058 ORTHO05D010790 3.5e-15 84.3 62 59.7
Gohir.D05G384600 Gossypium hirsutum HOM05D000058 ORTHO05D010790 7.8e-15 83.2 62 59.7
Gorai.009G451300 Gossypium raimondii HOM05D000058 ORTHO05D010790 1.0e-14 82.8 62 59.7
Gohir.D05G379000 Gossypium hirsutum HOM05D000058 ORTHO05D010790 7.3e-13 76.6 62 53.2
Gohir.A04G008900 Gossypium hirsutum HOM05D000058 ORTHO05D010790 9.5e-13 76.3 62 53.2
Gohir.A04G009050 Gossypium hirsutum HOM05D000058 ORTHO05D010790 9.5e-13 76.3 62 53.2
Gohir.A04G009200 Gossypium hirsutum HOM05D000058 ORTHO05D010790 9.5e-13 76.3 62 53.2
Gohir.A04G041000 Gossypium hirsutum HOM05D000058 ORTHO05D010790 2.8e-12 74.7 62 51.6
Gohir.D05G342100 Gossypium hirsutum HOM05D000058 ORTHO05D010790 2.8e-12 74.7 62 51.6
Gohir.D05G342166 Gossypium hirsutum HOM05D000058 ORTHO05D000077 2.8e-12 74.7 62 51.6
Gohir.D05G342200 Gossypium hirsutum HOM05D000058 ORTHO05D010790 2.8e-12 74.7 62 51.6
Gorai.009G368500 Gossypium raimondii HOM05D000058 ORTHO05D010790 2.8e-12 74.7 62 51.6
Gohir.A04G020400 Gossypium hirsutum HOM05D000058 ORTHO05D010790 8.1e-12 73.2 62 50.0
Gohir.A04G020500 Gossypium hirsutum HOM05D000058 ORTHO05D010790 8.1e-12 73.2 62 50.0
Gohir.A04G020600 Gossypium hirsutum HOM05D000058 ORTHO05D010790 8.1e-12 73.2 62 50.0
Gorai.009G425800 Gossypium raimondii HOM05D000058 ORTHO05D010790 1.4e-11 72.4 62 50.0
Gorai.009G426000 Gossypium raimondii HOM05D000058 ORTHO05D010790 1.4e-11 72.4 62 50.0
Gorai.009G446600 Gossypium raimondii HOM05D000058 ORTHO05D010790 1.4e-11 72.4 62 50.0
Gohir.D05G342250 Gossypium hirsutum HOM05D000058 ORTHO05D010790 2.3e-11 71.6 62 50.0
Gohir.D05G378600 Gossypium hirsutum HOM05D000058 ORTHO05D010790 3.1e-11 71.2 62 50.0
Gohir.D05G378650 Gossypium hirsutum HOM05D000058 ORTHO05D010790 3.1e-11 71.2 62 50.0
Gohir.D05G378700 Gossypium hirsutum HOM05D000058 ORTHO05D010790 3.1e-11 71.2 62 50.0
Gohir.D05G378950 Gossypium hirsutum HOM05D000058 ORTHO05D010790 4.0e-11 70.9 62 50.0
Gohir.D08G136450 Gossypium hirsutum HOM05D000058 ORTHO05D010790 8.9e-11 69.7 62 48.4
Gorai.009G446500 Gossypium raimondii HOM05D000058 ORTHO05D010790 3.4e-10 67.8 64 50.0
Gohir.D07G127300 Gossypium hirsutum HOM05D000058 ORTHO05D010790 1.7e-09 65.5 62 50.0
Gohir.D05G366100 Gossypium hirsutum HOM05D000058 ORTHO05D010790 2.2e-09 65.1 64 46.9
Thhalv10011445m.g Eutrema salsugineum HOM05D000058 ORTHO05D000077 1.4e-08 62.4 60 46.7
Gorai.001G137500 Gossypium raimondii HOM05D000058 ORTHO05D010790 1.4e-08 62.4 62 48.4
Carub.0001s3476 Capsella rubella HOM05D000058 ORTHO05D000077 2.4e-08 61.6 60 46.7
Lalb_Chr12g0206141 Lupinus albus HOM05D000058 ORTHO05D000077 9.2e-08 59.7 60 43.3
Medtr3g090150 Medicago truncatula HOM05D000058 ORTHO05D000077 9.2e-08 59.7 60 43.3
AT1G43780 Arabidopsis thaliana HOM05D000058 ORTHO05D000077 1.2e-07 59.3 60 46.7
Duzib041G0638 Durio zibethinus HOM05D000058 ORTHO05D000077 1.2e-07 59.3 60 45.0
Manes.02G175300 Manihot esculenta HOM05D000058 ORTHO05D000077 1.2e-07 59.3 60 46.7
CARHR035490 Cardamine hirsuta HOM05D000058 ORTHO05D000077 1.6e-07 58.9 50 48.0
CARHR035510 Cardamine hirsuta HOM05D000058 ORTHO05D000077 1.6e-07 58.9 50 48.0
Cfa018362 Carpinus fangiana HOM05D000058 ORTHO05D000077 1.6e-07 58.9 60 46.7
Haze_17712 Corylus avellana HOM05D000058 ORTHO05D000077 1.6e-07 58.9 60 46.7
FAN15G1758 Fragaria x ananassa HOM05D000058 ORTHO05D000077 1.6e-07 58.9 50 50.0
FAN27G0438 Fragaria x ananassa HOM05D000058 ORTHO05D000077 1.6e-07 58.9 50 50.0
Duzib093G1722 Durio zibethinus HOM05D000058 ORTHO05D000077 2.1e-07 58.5 50 50.0
FvH4_2g14630 Fragaria vesca HOM05D000058 ORTHO05D000077 2.1e-07 58.5 50 50.0
AL1G51870 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 2.7e-07 58.2 60 45.0
Gohir.A05G241700 Gossypium hirsutum HOM05D000058 ORTHO05D000077 2.7e-07 58.2 50 50.0
Gohir.D05G243000 Gossypium hirsutum HOM05D000058 ORTHO05D000077 2.7e-07 58.2 50 50.0
Gorai.009G252300 Gossypium raimondii HOM05D000058 ORTHO05D000077 2.7e-07 58.2 50 50.0
Lalb_Chr08g0240771 Lupinus albus HOM05D000058 ORTHO05D000077 2.7e-07 58.2 60 41.7
Medtr5g072570 Medicago truncatula HOM05D000058 ORTHO05D000077 2.7e-07 58.2 50 50.0
VMungo0647G1854 Vigna mungo HOM05D000058 ORTHO05D000077 2.7e-07 58.2 50 50.0
COL.COLO4_07951 Corchorus olitorius HOM05D000058 ORTHO05D000077 3.5e-07 57.8 50 48.0
Glyma.04G240600 Glycine max HOM05D000058 ORTHO05D000077 3.5e-07 57.8 50 46.0
Oeu007010.1 Olea europaea HOM05D000058 ORTHO05D000077 3.5e-07 57.8 50 50.0
VMungo1309G1965 Vigna mungo HOM05D000058 ORTHO05D000077 3.5e-07 57.8 50 50.0
AL3G45000 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 4.6e-07 57.4 50 48.0
BcaC07g37446 Brassica carinata HOM05D000058 ORTHO05D000077 4.6e-07 57.4 60 41.7
A08p07470 Brassica napus HOM05D000058 ORTHO05D000077 4.6e-07 57.4 60 41.7
C08p09210 Brassica napus HOM05D000058 ORTHO05D000077 4.6e-07 57.4 60 41.7
BolC8t47769H Brassica oleracea HOM05D000058 ORTHO05D000077 4.6e-07 57.4 60 41.7
BraA08t32765Z Brassica rapa HOM05D000058 ORTHO05D000077 4.6e-07 57.4 60 41.7
CSS0004022 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 4.6e-07 57.4 50 46.0
COL.COLO4_10650 Corchorus olitorius HOM05D000058 ORTHO05D010790 4.6e-07 57.4 57 50.9
Lalb_Chr23g0271361 Lupinus albus HOM05D000058 ORTHO05D000077 4.6e-07 57.4 50 48.0
Lalb_Chr23g0271481 Lupinus albus HOM05D000058 ORTHO05D000077 4.6e-07 57.4 50 48.0
RcHm_v2.0_Chr6g0277101 Rosa chinensis HOM05D000058 ORTHO05D000077 4.6e-07 57.4 50 48.0
THA.LOC104806850 Tarenaya hassleriana HOM05D000058 ORTHO05D000077 4.6e-07 57.4 50 48.0
Thecc.08G144900 Theobroma cacao HOM05D000058 ORTHO05D000077 4.6e-07 57.4 50 48.0
TPR.G18757 Trifolium pratense HOM05D000058 ORTHO05D000077 4.6e-07 57.4 49 49.0
GSVIVG01029749001 Vitis vinifera HOM05D000058 ORTHO05D000077 4.6e-07 57.4 50 48.0
CSS0007565 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 48.0
CSS0011399 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 48.0
Ca_05639_v3 Cicer arietinum L. HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 48.0
Ciclev10000998m.g Citrus clementina HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 46.0
Cc10_g12870 Coffea canephora HOM05D000058 ORTHO05D000077 6.0e-07 57.0 47 51.1
Dinv25811 Davidia involucrata HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 48.0
Glyma.06G122800 Glycine max HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 48.0
Glyma.14G122200 Glycine max HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 48.0
Phvul.001G073200 Phaseolus vulgaris HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 48.0
SalBow7G3899 Salvia bowleyana HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 48.0
Sp1g32890 Schrenkiella parvula HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 46.0
Hund26729 Selenicereus undatus HOM05D000058 ORTHO05D000077 6.0e-07 57.0 60 43.3
TPR.G29705 Trifolium pratense HOM05D000058 ORTHO05D000077 6.0e-07 57.0 50 48.0
MSTRG.25332 Avicennia marina HOM05D000058 ORTHO05D000077 7.8e-07 56.6 50 48.0
BcaB04g17754 Brassica carinata HOM05D000058 ORTHO05D000077 7.8e-07 56.6 60 41.7
CANSAT25G0761 Cannabis sativa HOM05D000058 ORTHO05D000077 7.8e-07 56.6 50 48.0
Peaxi162Scf00263g00321 Petunia axillaris HOM05D000058 ORTHO05D000077 7.8e-07 56.6 50 48.0
Phvul.009G134900 Phaseolus vulgaris HOM05D000058 ORTHO05D000077 7.8e-07 56.6 47 51.1
CiPaw.15G021300 Carya illinoinensis HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 48.0
Ca_24296_v3 Cicer arietinum L. HOM05D000058 ORTHO05D000077 1.0e-06 56.2 57 42.1
Migut.C01039 Erythranthe guttata HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 48.0
Eucgr.F02740 Eucalyptus grandis HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 48.0
FAN24G3377 Fragaria x ananassa HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 48.0
HanXRQChr05g0161101 Helianthus annuus HOM05D000058 ORTHO05D000077 1.0e-06 56.2 47 48.9
Nn1g06201 Nelumbo nucifera HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 48.0
Nitab4.5_0004770g0110 Nicotiana tabacum HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 46.0
Oeu000782.1 Olea europaea HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 46.0
Psat6g016000 Pisum sativum HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 48.0
QL02p025284 Quercus lobata HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 48.0
TAR381G1145 Trochodendron aralioides HOM05D003222 ORTHO05D003706 1.0e-06 56.2 50 48.0
TAR625G0693 Trochodendron aralioides HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 48.0
GSVIVG01010033001 Vitis vinifera HOM05D000058 ORTHO05D000077 1.0e-06 56.2 50 48.0
Atru.chr13.2267 Acer truncatum HOM05D000058 ORTHO05D000077 1.3e-06 55.8 50 46.0
Ah.01g006380 Amaranthus hybridus HOM05D000058 ORTHO05D000077 1.3e-06 55.8 47 48.9
EL10Ac1g01475 Beta vulgaris HOM05D000058 ORTHO05D000077 1.3e-06 55.8 50 46.0
DCAR_001106 Daucus carota HOM05D000058 ORTHO05D000077 1.3e-06 55.8 50 46.0
Lj7A364G81 Lonicera japonica HOM05D000058 ORTHO05D000077 1.3e-06 55.8 50 46.0
Medtr3g090130 Medicago truncatula HOM05D000058 ORTHO05D000077 1.3e-06 55.8 46 47.8
Nn5g28625 Nelumbo nucifera HOM05D000058 ORTHO05D000077 1.3e-06 55.8 50 46.0
PGR042G0180 Punica granatum HOM05D000058 ORTHO05D000077 1.3e-06 55.8 50 46.0
Sc02g0004400 Simmondsia chinensis HOM05D000058 ORTHO05D000077 1.3e-06 55.8 50 44.0
THA.LOC104798870 Tarenaya hassleriana HOM05D000058 ORTHO05D000077 1.3e-06 55.8 47 48.9
TPR.G18766 Trifolium pratense HOM05D000058 ORTHO05D000077 1.3e-06 55.8 60 40.0
HPP92_018447 Vanilla planifolia HOM05D000058 ORTHO05D000077 1.3e-06 55.8 60 43.3
AT2G12480 Arabidopsis thaliana HOM05D000058 ORTHO05D000077 1.7e-06 55.5 50 46.0
AUR62013495 Chenopodium quinoa HOM05D000058 ORTHO05D000077 1.7e-06 55.5 60 41.7
Hma1.2p1_0107F.1_g051440 Hydrangea macrophylla HOM05D000058 ORTHO05D000077 1.7e-06 55.5 50 46.0
Lj1g0026445 Lotus japonicus HOM05D000058 ORTHO05D000077 1.7e-06 55.5 47 51.1
unitig_32.g11279 Utricularia gibba HOM05D000058 ORTHO05D000077 1.7e-06 55.5 50 50.0
Aqoxy3G00818 Aquilegia oxysepala HOM05D000058 ORTHO05D000077 2.3e-06 55.1 50 46.0
Aqoxy5G02190 Aquilegia oxysepala HOM05D000058 ORTHO05D000077 2.3e-06 55.1 50 46.0
EL10Ac1g01473 Beta vulgaris HOM05D000058 ORTHO05D000077 2.3e-06 55.1 57 45.6
AUR62026784 Chenopodium quinoa HOM05D000058 ORTHO05D000077 2.3e-06 55.1 47 48.9
MELO3C023692.2 Cucumis melo HOM05D000058 ORTHO05D000077 2.3e-06 55.1 49 46.9
CsaV3_7G024890 Cucumis sativus L. HOM05D000058 ORTHO05D000077 2.3e-06 55.1 49 46.9
MD10G1015500 Malus domestica HOM05D000058 ORTHO05D000077 2.3e-06 55.1 50 48.0
Manes.18G087700 Manihot esculenta HOM05D000058 ORTHO05D000077 2.3e-06 55.1 50 48.0
Solyc04g064760.3 Solanum lycopersicum HOM05D000058 ORTHO05D000077 2.3e-06 55.1 50 44.0
Sopen04g026720 Solanum pennellii HOM05D000058 ORTHO05D000077 2.3e-06 55.1 50 44.0
PGSC0003DMG400024802 Solanum tuberosum HOM05D000058 ORTHO05D000077 2.3e-06 55.1 50 44.0
Aa31LG9G12270 Aethionema arabicum HOM05D000058 ORTHO05D000077 3.0e-06 54.7 47 46.8
Ca_16652_v3 Cicer arietinum L. HOM05D000058 ORTHO05D000077 3.0e-06 54.7 46 47.8
HanXRQChr08g0232561 Helianthus annuus HOM05D000058 ORTHO05D000077 3.0e-06 54.7 46 47.8
Psat0s2193g0120 Pisum sativum HOM05D000058 ORTHO05D000077 3.0e-06 54.7 46 47.8
Sed0011707 Sechium edule HOM05D000058 ORTHO05D000077 3.0e-06 54.7 49 46.9
CAN.G744.18 Capsicum annuum HOM05D000058 ORTHO05D000077 3.9e-06 54.3 50 44.0
AUR62026782 Chenopodium quinoa HOM05D000058 ORTHO05D000077 3.9e-06 54.3 49 44.9
ECA246G1055 Erigeron canadensis HOM05D000058 ORTHO05D000077 5.1e-06 53.9 46 47.8
Lj1g0017077 Lotus japonicus HOM05D000058 ORTHO05D000077 5.1e-06 53.9 47 48.9
Prupe.8G019200 Prunus persica HOM05D000058 ORTHO05D000077 5.1e-06 53.9 50 44.0
ClCG09G009840 Citrullus lanatus HOM05D000058 ORTHO05D000077 6.6e-06 53.5 46 47.8


User provided reference genes

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