Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 1.0e-69 266.9 164 100.0
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 6.3e-48 194.5 126 73.8
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 5.6e-44 181.4 126 66.7
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 9.5e-44 180.6 126 66.7
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.0e-42 177.2 126 65.1
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.3e-42 176.0 126 69.8
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.0e-42 175.6 126 69.8
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 6.8e-42 174.5 126 69.0
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 6.8e-42 174.5 126 69.0
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 8.9e-42 174.1 167 76.6
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.2e-41 173.7 126 69.0
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 4.4e-41 171.8 126 68.3
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 9.8e-41 170.6 126 68.3
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 7.0e-39 164.5 126 64.3
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 4.4e-33 145.2 126 58.7
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.2e-30 137.1 125 58.4
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 7.8e-30 134.4 125 62.4
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.7e-29 133.3 164 65.9
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 2.3e-29 132.9 122 59.0
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 3.0e-29 132.5 177 63.8
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 6.6e-29 131.3 126 57.1
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 6.6e-29 131.3 121 61.2
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 1.5e-28 130.2 131 58.8
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.5e-28 130.2 86 69.8
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 5.6e-28 128.3 126 56.3
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 9.5e-28 127.5 126 54.8
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 9.5e-28 127.5 162 63.0
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 3.6e-27 125.6 122 57.4
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 3.6e-27 125.6 123 53.7
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 3.6e-27 125.6 160 65.6
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 4.7e-27 125.2 121 57.0
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 6.2e-27 124.8 130 53.1
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 6.2e-27 124.8 122 54.9
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.1e-26 124.0 123 57.7
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 2.3e-26 122.9 123 55.3
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 5.2e-26 121.7 127 56.7
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 5.2e-26 121.7 124 50.8
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 2.6e-25 119.4 120 55.0
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 3.4e-25 119.0 125 54.4
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 4.4e-25 118.6 127 54.3
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 5.8e-25 118.2 128 52.3
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 7.5e-25 117.9 127 55.1
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 1.7e-24 116.7 129 51.2
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 1.7e-24 116.7 119 56.3
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 3.7e-24 115.5 127 54.3
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 6.4e-24 114.8 126 51.6
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 2.4e-23 112.8 126 49.2
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 2.4e-23 112.8 91 59.3
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 3.2e-23 112.5 126 48.4
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 5.4e-23 111.7 128 50.0
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 5.4e-23 111.7 125 55.2
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 7.1e-23 111.3 128 50.8
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 1.2e-22 110.5 126 47.6
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 1.2e-22 110.5 126 47.6
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 1.2e-22 110.5 126 47.6
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 1.2e-22 110.5 130 51.5
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.6e-22 110.2 130 50.8
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 2.1e-22 109.8 124 46.0
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.7e-22 109.4 124 52.4
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 2.7e-22 109.4 127 49.6
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 3.5e-22 109.0 84 65.5
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 3.5e-22 109.0 128 47.7
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 4.6e-22 108.6 126 50.0
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 6.0e-22 108.2 126 47.6
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 1.0e-21 107.5 84 63.1
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 1.3e-21 107.1 124 50.8
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 1.3e-21 107.1 128 47.7
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 1.3e-21 107.1 121 49.6
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.7e-21 106.7 126 49.2
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.0e-21 105.9 126 46.8
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 5.1e-21 105.1 126 46.8
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 6.6e-21 104.8 129 48.8
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 8.6e-21 104.4 126 47.6
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.5e-20 103.6 127 48.8
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 3.3e-20 102.4 129 46.5
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 4.3e-20 102.1 97 51.5
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 7.3e-20 101.3 126 46.0
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 2.8e-19 99.4 125 47.2
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 3.6e-19 99.0 125 47.2
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 4.7e-19 98.6 116 50.9
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 4.7e-19 98.6 73 61.6
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 6.2e-19 98.2 126 47.6
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 6.2e-19 98.2 93 54.8
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 1.8e-18 96.7 70 58.6
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 3.1e-18 95.9 132 46.2
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 5.2e-18 95.1 129 46.5
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 8.9e-18 94.4 90 55.6
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 1.2e-17 94.0 125 46.4
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.5e-17 93.6 128 46.1
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 2.0e-17 93.2 164 56.7
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 2.0e-17 93.2 124 45.2
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 4.4e-17 92.0 125 44.8
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 7.6e-17 91.3 126 45.2
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 5.4e-15 85.1 81 50.6
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 7.1e-15 84.7 58 62.1
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 9.2e-15 84.3 122 44.3
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 3.5e-14 82.4 124 40.3
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 3.0e-13 79.3 112 42.9
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 6.6e-13 78.2 114 42.1
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 1.2e-11 73.9 129 41.9
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 1.2e-09 67.4 128 35.2
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 8.4e-08 61.2 66 43.9
HPP92_020058 Vanilla planifolia HOM05D003240 ORTHO05D009426 1.6e-06 57.0 110 61.8


User provided reference genes

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