Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G090300 Theobroma cacao HOM05D002373 ORTHO05D008661 9.8e-178 626.7 320 100.0
Gohir.D13G151000 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.7e-161 572.8 320 90.0
COL.COLO4_27178 Corchorus olitorius HOM05D002373 ORTHO05D008661 1.1e-157 560.1 319 89.7
Gohir.A13G146100 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.6e-156 556.2 320 87.5
Ciclev10008924m.g Citrus clementina HOM05D002373 ORTHO05D008661 7.6e-138 494.2 323 77.4
Cpa.g.sc80.70 Carica papaya HOM05D002373 ORTHO05D008661 1.7e-137 493.0 323 77.4
TAR624G1149 Trochodendron aralioides HOM05D002373 ORTHO05D008661 6.0e-135 484.6 322 77.6
GSVIVG01014327001 Vitis vinifera HOM05D002373 ORTHO05D008661 1.1e-133 480.3 322 75.8
Actinidia35249 Actinidia chinensis HOM05D002373 ORTHO05D008661 9.6e-133 477.2 322 74.8
CANSAT56G3654 Cannabis sativa HOM05D002373 ORTHO05D008661 2.6e-130 469.2 323 74.9
CARHR043340 Cardamine hirsuta HOM05D002373 ORTHO05D008661 4.4e-130 468.4 323 73.7
THA.LOC104810464 Tarenaya hassleriana HOM05D002373 ORTHO05D008661 4.4e-130 468.4 322 76.1
AL1G61480 Arabidopsis lyrata HOM05D002373 ORTHO05D008661 1.3e-129 466.8 323 73.7
RcHm_v2.0_Chr5g0033281 Rosa chinensis HOM05D002373 ORTHO05D008661 1.9e-128 463.0 323 73.4
Cfa020577 Carpinus fangiana HOM05D002373 ORTHO05D008661 3.2e-128 462.2 314 74.2
Sp1g39670 Schrenkiella parvula HOM05D002373 ORTHO05D008661 4.2e-128 461.8 323 72.4
Prupe.4G180500 Prunus persica HOM05D002373 ORTHO05D008661 5.4e-128 461.5 320 72.8
Nn1g04122 Nelumbo nucifera HOM05D002373 ORTHO05D008661 1.2e-127 460.3 314 76.4
Aa31LG10G2010 Aethionema arabicum HOM05D002373 ORTHO05D008661 1.6e-127 459.9 323 72.4
Carub.0001s4228 Capsella rubella HOM05D002373 ORTHO05D008661 1.6e-127 459.9 323 73.4
CsaV3_3G019460 Cucumis sativus L. HOM05D002373 ORTHO05D008661 2.7e-127 459.1 318 73.0
Thhalv10011660m.g Eutrema salsugineum HOM05D002373 ORTHO05D008661 2.7e-127 459.1 323 71.5
Potri.011G119800 Populus trichocarpa HOM05D002373 ORTHO05D008661 2.7e-127 459.1 319 73.7
AT1G53120 Arabidopsis thaliana HOM05D002373 ORTHO05D008661 3.5e-127 458.8 323 72.8
A05p18620 Brassica napus HOM05D002373 ORTHO05D008661 2.3e-126 456.1 329 71.4
BcaC08g44045 Brassica carinata HOM05D002373 ORTHO05D008661 3.9e-126 455.3 328 71.6
FvH4_3g19840 Fragaria vesca HOM05D002373 ORTHO05D008661 3.9e-126 455.3 323 73.4
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 1.5e-125 453.4 327 71.9
BolC6t36626H Brassica oleracea HOM05D002373 ORTHO05D008661 1.5e-125 453.4 328 71.3
MELO3C019408.2 Cucumis melo HOM05D002373 ORTHO05D008661 1.5e-125 453.4 316 72.5
Dinv20179 Davidia involucrata HOM05D002373 ORTHO05D008661 1.5e-125 453.4 325 72.0
CSS0006904 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.5e-125 452.6 321 71.3
C06p14460 Brassica napus HOM05D002373 ORTHO05D008661 4.3e-125 451.8 328 71.0
ClCG05G009320 Citrullus lanatus HOM05D002373 ORTHO05D008661 4.3e-125 451.8 332 69.6
MD11G1252400 Malus domestica HOM05D002373 ORTHO05D008661 4.3e-125 451.8 323 72.8
FAN11G3740 Fragaria x ananassa HOM05D002373 ORTHO05D008661 7.3e-125 451.1 323 73.1
Sed0026190 Sechium edule HOM05D002373 ORTHO05D008661 1.6e-124 449.9 318 71.7
Eucgr.F01146 Eucalyptus grandis HOM05D002373 ORTHO05D008661 2.1e-124 449.5 327 72.8
DCAR_019560 Daucus carota HOM05D002373 ORTHO05D008661 3.6e-124 448.7 278 77.3
Glyma.12G224900 Glycine max HOM05D002373 ORTHO05D008661 6.2e-124 448.0 325 71.4
Lj3g0019501 Lotus japonicus HOM05D002373 ORTHO05D008661 3.1e-123 445.7 324 71.6
FAN25G2634 Fragaria x ananassa HOM05D002373 ORTHO05D008661 4.0e-123 445.3 322 72.4
QL08p022081 Quercus lobata HOM05D002373 ORTHO05D008661 6.9e-123 444.5 329 71.4
Sabra11G0104200 Salix brachista HOM05D002373 ORTHO05D008661 9.0e-123 444.1 290 76.2
BraA05t20753Z Brassica rapa HOM05D002373 ORTHO05D008661 2.6e-122 442.6 269 79.9
MBI06_g23077_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D008661 3.4e-122 442.2 327 70.9
CSS0005109 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 5.8e-122 441.4 322 70.8
CiPaw.11G170200 Carya illinoinensis HOM05D002373 ORTHO05D008661 5.8e-122 441.4 340 68.5
Atru.BG.257.p Acer truncatum HOM05D002373 ORTHO05D008661 9.9e-122 440.7 254 86.2
arahy.Tifrunner.gnm1.ann1.CVL1T8 Arachis hypogaea HOM05D002373 ORTHO05D008661 2.9e-121 439.1 328 70.4
Atru.BG.152.p Acer truncatum HOM05D002373 ORTHO05D008661 4.9e-121 438.3 254 85.8
arahy.Tifrunner.gnm1.ann1.D1WMTZ Arachis hypogaea HOM05D002373 ORTHO05D008661 4.9e-121 438.3 328 70.4
HanXRQChr12g0364201 Helianthus annuus HOM05D002373 ORTHO05D008661 8.4e-121 437.6 278 75.2
PGSC0003DMG400015321 Solanum tuberosum HOM05D002373 ORTHO05D008661 8.4e-121 437.6 323 69.3
Solyc12g013870.3 Solanum lycopersicum HOM05D002373 ORTHO05D008661 1.4e-120 436.8 323 68.7
Sopen12g007190 Solanum pennellii HOM05D002373 ORTHO05D008661 7.1e-120 434.5 323 68.4
Phvul.002G286700 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.6e-119 433.3 322 69.9
Lalb_Chr25g0286331 Lupinus albus HOM05D002373 ORTHO05D008661 2.7e-119 432.6 322 69.9
VMungo1080G1315 Vigna mungo HOM05D002373 ORTHO05D008661 7.9e-119 431.0 322 69.6
Lj1C842T3 Lonicera japonica HOM05D002373 ORTHO05D008661 6.7e-118 427.9 322 68.9
Migut.H01944 Erythranthe guttata HOM05D002373 ORTHO05D008661 8.7e-118 427.6 324 67.3
PGR083G2563 Punica granatum HOM05D002373 ORTHO05D008661 1.5e-117 426.8 336 68.5
CAN.G213.9 Capsicum annuum HOM05D002373 ORTHO05D008661 1.9e-117 426.4 322 67.1
MSTRG.12905 Avicennia marina HOM05D002373 ORTHO05D008661 5.6e-117 424.9 323 66.9
Medtr2g085340 Medicago truncatula HOM05D002373 ORTHO05D008661 9.6e-117 424.1 320 68.4
Psat5g243920 Pisum sativum HOM05D002373 ORTHO05D008661 9.6e-117 424.1 320 67.8
Ca_03504_v3 Cicer arietinum L. HOM05D002373 ORTHO05D008661 2.1e-116 422.9 319 67.4
ECA240G3063 Erigeron canadensis HOM05D002373 ORTHO05D008661 2.1e-116 422.9 271 74.2
TPR.G39017 Trifolium pratense HOM05D002373 ORTHO05D008661 6.2e-116 421.4 282 73.4
Lsat_1_v5_gn_9_97941 Lactuca sativa HOM05D002373 ORTHO05D008661 1.4e-115 420.2 320 66.9
Aqoxy1G02390 Aquilegia oxysepala HOM05D002373 ORTHO05D008661 6.9e-115 417.9 286 74.1
vmacro09529 Vaccinium macrocarpon HOM05D002373 ORTHO05D008661 4.5e-114 415.2 294 72.4
Nitab4.5_0009292g0020 Nicotiana tabacum HOM05D002373 ORTHO05D008661 6.4e-113 411.4 301 68.4
TWI38G1988 Tripterygium wilfordii HOM05D002373 ORTHO05D008661 3.2e-112 409.1 268 78.0
Peaxi162Scf00000g03511 Petunia axillaris HOM05D002373 ORTHO05D008661 3.5e-111 405.6 302 68.5
EL10Ac4g08187 Beta vulgaris HOM05D002373 ORTHO05D008661 1.6e-108 396.7 282 68.8
Manes.03G109500 Manihot esculenta HOM05D002373 ORTHO05D008661 3.7e-108 395.6 237 82.7
SGA_v2.0_scaffold70G23676 Striga asiatica HOM05D002373 ORTHO05D008661 4.8e-108 395.2 343 60.6
Hund20000 Selenicereus undatus HOM05D002373 ORTHO05D008661 1.4e-107 393.7 322 65.8
Zm00001eb153060 Zea mays HOM05D002373 ORTHO05D008661 1.8e-107 393.3 273 71.8
AUR62019433 Chenopodium quinoa HOM05D002373 ORTHO05D008661 2.4e-107 392.9 285 69.5
Haze_09434 Corylus avellana HOM05D002373 ORTHO05D008661 2.4e-107 392.9 316 65.5
AUR62039201 Chenopodium quinoa HOM05D002373 ORTHO05D008661 1.2e-106 390.6 285 69.5
Os01g0747700 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D008661 5.8e-106 388.3 274 70.4
Ah.06g184370 Amaranthus hybridus HOM05D002373 ORTHO05D008661 1.0e-105 387.5 270 71.1
FAN16G2188 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.3e-105 387.1 236 79.2
Gorai.013G169000 Gossypium raimondii HOM05D002373 ORTHO05D008661 1.3e-105 387.1 217 87.6
Gorai.013G170800 Gossypium raimondii HOM05D002373 ORTHO05D008661 6.5e-105 384.8 212 91.5
ATR0737G132 Amborella trichopoda HOM05D002373 ORTHO05D008661 1.1e-104 384.0 262 71.0
CDE02G2303 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 6.7e-102 374.8 234 76.5
Phvul.005G072600 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.9e-101 373.2 237 78.5
HPP92_024439 Vanilla planifolia HOM05D002373 ORTHO05D008661 1.9e-101 373.2 251 72.1
Nitab4.5_0000332g0080 Nicotiana tabacum HOM05D002373 ORTHO05D008661 5.3e-99 365.2 301 63.5
unitig_26.g9527 Utricularia gibba HOM05D002373 ORTHO05D008661 6.5e-97 358.2 273 65.9
FAN21G4050 Fragaria x ananassa HOM05D002373 ORTHO05D008661 3.6e-95 352.4 212 80.2
Sc03g0010080 Simmondsia chinensis HOM05D002373 ORTHO05D008661 5.1e-94 348.6 253 67.6
Rhsim04G0021500 Rhododendron simsii HOM05D002373 ORTHO05D008661 6.7e-94 348.2 276 67.0
PSO541G6350 Papaver somniferum HOM05D002373 ORTHO05D008661 1.8e-91 340.1 262 65.6
Oeu060559.2 Olea europaea HOM05D002373 ORTHO05D008661 5.0e-89 332.0 384 49.2
Pp3c20_21790 Physcomitrium patens HOM05D002373 ORTHO05D008661 1.0e-81 307.8 283 55.5
AagrBONN_evm.TU.Sc2ySwM_344.3401 Anthoceros agrestis HOM05D002373 ORTHO05D008661 9.4e-80 301.2 293 51.2
Glyma.13G276400 Glycine max HOM05D002373 ORTHO05D008661 7.0e-75 285.0 246 60.2
Mapoly0051s0038 Marchantia polymorpha HOM05D002373 ORTHO05D008661 6.1e-71 271.9 284 50.4
SMO367G1013 Selaginella moellendorffii HOM05D002373 ORTHO05D008661 1.5e-69 267.3 243 55.1
Cre12.g502950 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D008661 2.7e-63 246.5 250 51.2
CDE08G0691 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 6.8e-62 241.9 148 77.7
MCO14G219 Micromonas commoda HOM05D002373 ORTHO05D008661 1.5e-53 214.2 268 45.1
CSS0025404 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 4.9e-52 209.1 129 75.2
Thecc.07G090900 Theobroma cacao HOM05D002373 ORTHO05D008661 4.3e-48 196.1 105 93.3
Gohir.D13G152082 Gossypium hirsutum HOM05D002373 ORTHO05D008661 2.2e-36 157.1 88 92.0
Gorai.013G170900 Gossypium raimondii HOM05D002373 ORTHO05D008661 6.4e-36 155.6 88 92.0
Gohir.A13G147066 Gossypium hirsutum HOM05D002373 ORTHO05D008661 9.5e-32 141.7 81 90.1
A01p26780 Brassica napus HOM05D002373 ORTHO05D008661 2.1e-23 114.0 76 73.7
CSS0007754 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.2e-20 104.0 65 73.8
CSS0007182 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 8.4e-20 102.1 64 75.0
PRCOL_00005720 Prasinoderma coloniale HOM05D002373 ORTHO05D008661 4.1e-19 99.8 271 30.3
Atru.chr2.2601 Acer truncatum HOM05D002373 ORTHO05D013107 1.9e-08 64.3 35 85.7
BcaC05g28656 Brassica carinata HOM05D022203 ORTHO05D024331 1.9e-08 64.3 36 80.6
MD11G1248800 Malus domestica HOM05D002373 ORTHO05D008661 1.9e-08 64.3 157 38.9


User provided reference genes

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