Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G089300 Theobroma cacao HOM05D006733 ORTHO05D008406 3.5e-31 137.5 63 100.0
Gohir.D05G356700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 6.5e-25 116.7 61 85.2
Gorai.009G388900 Gossypium raimondii HOM05D006733 ORTHO05D008406 6.5e-25 116.7 61 85.2
Duzib170G0030 Durio zibethinus HOM05D006733 ORTHO05D008406 1.4e-24 115.5 61 82.0
Gohir.D05G356800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.5e-24 114.8 62 80.6
Gorai.009G388600 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.5e-24 114.8 61 83.6
Gorai.009G389000 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.5e-24 114.8 62 80.6
Duzib170G0610 Durio zibethinus HOM05D006733 ORTHO05D008406 4.2e-24 114.0 61 82.0
Gohir.A04G030100 Gossypium hirsutum HOM05D006733 ORTHO05D008406 4.2e-24 114.0 61 82.0
COL.COLO4_27167 Corchorus olitorius HOM05D006733 ORTHO05D008406 7.1e-24 113.2 62 79.0
Gohir.A04G030300 Gossypium hirsutum HOM05D006733 ORTHO05D008406 7.1e-24 113.2 61 82.0
Gorai.009G388200 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.1e-23 111.7 61 80.3
CiPaw.11G169300 Carya illinoinensis HOM05D006733 ORTHO05D008406 4.6e-23 110.5 66 78.8
Gohir.D05G356200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 4.6e-23 110.5 61 82.0
Gohir.A11G284800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.3e-22 109.0 64 73.4
Gohir.D05G355800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.3e-22 109.0 61 77.0
Gohir.D11G297700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.1e-21 105.9 65 70.8
Gorai.007G322600 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.1e-21 105.9 65 70.8
Duzib213G0299 Durio zibethinus HOM05D006733 ORTHO05D008406 5.7e-21 103.6 61 82.0
Gorai.009G388700 Gossypium raimondii HOM05D006733 ORTHO05D008406 5.7e-21 103.6 61 77.0
QL08p021800 Quercus lobata HOM05D006733 ORTHO05D008406 7.4e-21 103.2 66 69.7
Haze_09425 Corylus avellana HOM05D006733 ORTHO05D008406 4.8e-20 100.5 67 70.1
CiPaw.12G118000 Carya illinoinensis HOM05D006733 ORTHO05D008406 8.2e-20 99.8 68 70.6
Gohir.D01G050200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 8.2e-20 99.8 65 73.8
Gorai.002G070100 Gossypium raimondii HOM05D006733 ORTHO05D008406 8.2e-20 99.8 65 73.8
Cfa020588 Carpinus fangiana HOM05D006733 ORTHO05D008406 4.1e-19 97.4 67 67.2
Glyma.06G242900 Glycine max HOM05D006733 ORTHO05D008406 4.1e-19 97.4 66 69.7
Glyma.12G154300 Glycine max HOM05D006733 ORTHO05D008406 6.9e-19 96.7 66 69.7
PGR083G2703 Punica granatum HOM05D006733 ORTHO05D008406 6.9e-19 96.7 67 65.7
Eucgr.F01127 Eucalyptus grandis HOM05D006733 ORTHO05D008406 1.5e-18 95.5 65 67.7
SalBow7G1032 Salvia bowleyana HOM05D006733 ORTHO05D008406 1.5e-18 95.5 64 68.8
arahy.Tifrunner.gnm1.ann1.XP1NDF Arachis hypogaea HOM05D006733 ORTHO05D008406 2.0e-18 95.1 66 68.2
vmacro11863 Vaccinium macrocarpon HOM05D006733 ORTHO05D008406 2.0e-18 95.1 64 70.3
PGR031G3292 Punica granatum HOM05D006733 ORTHO05D008406 2.6e-18 94.7 63 69.8
Oeu024912.1 Olea europaea HOM05D006733 ORTHO05D008406 5.9e-18 93.6 65 69.2
TWI39G1253 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 5.9e-18 93.6 66 65.2
Nitab4.5_0000332g0130 Nicotiana tabacum HOM05D006733 ORTHO05D008406 2.2e-17 91.7 67 64.2
Sc16g0006980 Simmondsia chinensis HOM05D006733 ORTHO05D008406 2.2e-17 91.7 66 63.6
TWI38G1652 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 2.9e-17 91.3 67 64.2
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 3.8e-17 90.9 56 73.2
RcHm_v2.0_Chr5g0033741 Rosa chinensis HOM05D006733 ORTHO05D008406 3.8e-17 90.9 64 68.8
Atru.chr2.2617 Acer truncatum HOM05D006733 ORTHO05D008406 5.0e-17 90.5 67 62.7
SalBow7G4025 Salvia bowleyana HOM05D006733 ORTHO05D008406 5.0e-17 90.5 64 65.6
GSVIVG01014340001 Vitis vinifera HOM05D006733 ORTHO05D008406 5.0e-17 90.5 63 65.1
MD11G1246800 Malus domestica HOM05D006733 ORTHO05D008406 6.5e-17 90.1 67 64.2
Actinidia12807 Actinidia chinensis HOM05D006733 ORTHO05D008406 8.5e-17 89.7 62 66.1
Hma1.2p1_0885F.1_g232600 Hydrangea macrophylla HOM05D006733 ORTHO05D008406 1.1e-16 89.4 67 59.7
FvH4_3g20030 Fragaria vesca HOM05D006733 ORTHO05D008406 1.4e-16 89.0 64 67.2
FAN11G2570 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.4e-16 89.0 64 67.2
FAN21G3200 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.4e-16 89.0 64 67.2
FAN25G0136 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.4e-16 89.0 64 67.2
DCAR_013104 Daucus carota HOM05D006733 ORTHO05D008406 1.9e-16 88.6 65 61.5
Hund02223 Selenicereus undatus HOM05D006733 ORTHO05D008406 1.9e-16 88.6 61 63.9
Atru.chr2.2618 Acer truncatum HOM05D006733 ORTHO05D008406 3.2e-16 87.8 65 61.5
Atru.chr2.2701 Acer truncatum HOM05D006733 ORTHO05D008406 3.2e-16 87.8 65 61.5
MD03G1227300 Malus domestica HOM05D006733 ORTHO05D008406 3.2e-16 87.8 67 61.2
MD03G1227500 Malus domestica HOM05D006733 ORTHO05D008406 3.2e-16 87.8 67 61.2
Lj3g0014029 Lotus japonicus HOM05D006733 ORTHO05D008406 4.2e-16 87.4 67 62.7
Atru.chr2.2702 Acer truncatum HOM05D006733 ORTHO05D008406 7.2e-16 86.7 65 61.5
FAN16G0436 Fragaria x ananassa HOM05D006733 ORTHO05D008406 7.2e-16 86.7 64 65.6
Oeu037948.1 Olea europaea HOM05D006733 ORTHO05D008406 7.2e-16 86.7 62 64.5
Aqoxy4G00811 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 1.2e-15 85.9 64 59.4
MBI06_g04174_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 1.6e-15 85.5 65 63.1
Medtr8g060850 Medicago truncatula HOM05D006733 ORTHO05D008406 2.1e-15 85.1 66 62.1
Migut.M00808 Erythranthe guttata HOM05D006733 ORTHO05D008406 2.7e-15 84.7 64 62.5
Manes.15G086700 Manihot esculenta HOM05D006733 ORTHO05D008406 2.7e-15 84.7 67 61.2
Nitab4.5_0005764g0010 Nicotiana tabacum HOM05D006733 ORTHO05D008406 2.7e-15 84.7 67 58.2
Lalb_Chr01g0006561 Lupinus albus HOM05D006733 ORTHO05D008406 3.6e-15 84.3 66 59.1
Os01g0200700 Oryza sativa ssp. japonica HOM05D006733 ORTHO05D008406 6.1e-15 83.6 64 60.9
Ca_24272_v3 Cicer arietinum L. HOM05D006733 ORTHO05D008406 1.0e-14 82.8 66 59.1
Cc05_g12060 Coffea canephora HOM05D006733 ORTHO05D008406 1.3e-14 82.4 66 54.5
Gohir.A04G029916 Gossypium hirsutum HOM05D006733 ORTHO05D008406 3.9e-14 80.9 45 80.0
Sc03g0009960 Simmondsia chinensis HOM05D006733 ORTHO05D008406 3.9e-14 80.9 64 57.8
Nn1g04086 Nelumbo nucifera HOM05D006733 ORTHO05D008406 1.5e-13 79.0 59 64.4
Aqoxy4G00809 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 1.9e-13 78.6 64 60.9
Prupe.4G181500 Prunus persica HOM05D006733 ORTHO05D008406 5.7e-13 77.0 67 52.2
BolC3t17038H Brassica oleracea HOM05D006733 ORTHO05D008406 7.4e-13 76.6 64 54.7
Aa31LG8G2570 Aethionema arabicum HOM05D006733 ORTHO05D008406 9.7e-13 76.3 60 56.7
Potri.001G400100 Populus trichocarpa HOM05D006733 ORTHO05D008406 9.7e-13 76.3 67 55.2
arahy.Tifrunner.gnm1.ann1.KTTP1X Arachis hypogaea HOM05D006733 ORTHO05D008406 1.6e-12 75.5 58 65.5
BcaC01g03880 Brassica carinata HOM05D006733 ORTHO05D008406 1.6e-12 75.5 64 53.1
C03p47630 Brassica napus HOM05D006733 ORTHO05D008406 1.6e-12 75.5 64 53.1
arahy.Tifrunner.gnm1.ann1.W6Q2IR Arachis hypogaea HOM05D006733 ORTHO05D008406 2.8e-12 74.7 58 65.5
CAN.G739.12 Capsicum annuum HOM05D006733 ORTHO05D008406 2.8e-12 74.7 63 55.6
Rhsim06G0198600 Rhododendron simsii HOM05D006733 ORTHO05D008406 2.8e-12 74.7 47 74.5
PGSC0003DMG400015318 Solanum tuberosum HOM05D006733 ORTHO05D008406 6.3e-12 73.6 64 54.7
PSO541G4814 Papaver somniferum HOM05D006733 ORTHO05D008406 8.2e-12 73.2 62 59.7
Manes.03G110500 Manihot esculenta HOM05D006733 ORTHO05D008406 1.8e-11 72.0 68 55.9
CARHR090380 Cardamine hirsuta HOM05D006733 ORTHO05D008406 3.1e-11 71.2 66 53.0
Thhalv10021853m.g Eutrema salsugineum HOM05D006733 ORTHO05D008406 3.1e-11 71.2 66 53.0
Carub.0003s1505 Capsella rubella HOM05D006733 ORTHO05D008406 5.3e-11 70.5 66 51.5
Hund22902 Selenicereus undatus HOM05D006733 ORTHO05D008406 5.3e-11 70.5 60 60.0
DCAR_019551 Daucus carota HOM05D006733 ORTHO05D008406 9.1e-11 69.7 61 54.1
Potri.011G118900 Populus trichocarpa HOM05D006733 ORTHO05D008406 2.6e-10 68.2 67 53.7
BcaC05g28981 Brassica carinata HOM05D006733 ORTHO05D008406 3.4e-10 67.8 61 49.2
A05p34080 Brassica napus HOM05D006733 ORTHO05D008406 3.4e-10 67.8 61 50.8
BolC5t33870H Brassica oleracea HOM05D006733 ORTHO05D008406 3.4e-10 67.8 61 49.2
BraA05t22229Z Brassica rapa HOM05D006733 ORTHO05D008406 3.4e-10 67.8 61 50.8
HPP92_020054 Vanilla planifolia HOM05D006733 ORTHO05D008406 5.9e-10 67.0 56 55.4
Lj5g0017019 Lotus japonicus HOM05D006733 ORTHO05D008406 7.7e-10 66.6 50 62.0
Sed0028027 Sechium edule HOM05D006733 ORTHO05D008406 1.3e-09 65.9 64 51.6
BcaB06g29562 Brassica carinata HOM05D006733 ORTHO05D008406 2.9e-09 64.7 61 47.5
Nn1g04087 Nelumbo nucifera HOM05D006733 ORTHO05D008406 2.9e-09 64.7 63 60.3
EL10Ac4g08173 Beta vulgaris HOM05D006733 ORTHO05D008406 3.8e-09 64.3 63 50.8
DCAR_020986 Daucus carota HOM05D006733 ORTHO05D008406 3.8e-09 64.3 64 56.2
MBI07_g30176_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 1.1e-08 62.8 63 57.1
Gohir.A01G063800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.2e-07 59.3 36 77.8
ClCG10G006940 Citrullus lanatus HOM05D006733 ORTHO05D008406 4.6e-07 57.4 49 53.1
Oeu060552.1 Olea europaea HOM05D006733 ORTHO05D008406 3.0e-06 54.7 44 61.4
ATR0737G148 Amborella trichopoda HOM05D006733 ORTHO05D008406 6.7e-06 53.5 51 52.9
TAR629G0476 Trochodendron aralioides HOM05D006733 ORTHO05D008406 6.7e-06 53.5 39 64.1


User provided reference genes

Program Settings