Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G084100 Theobroma cacao HOM05D000002 ORTHO05D000047 2.1e-38 161.8 75 100.0
Thecc.06G106100 Theobroma cacao HOM05D000002 ORTHO05D000047 3.6e-22 107.8 74 64.9
Nn5g27052 Nelumbo nucifera HOM05D000002 ORTHO05D000047 4.7e-22 107.5 74 63.5
Thecc.05G183100 Theobroma cacao HOM05D000002 ORTHO05D000047 4.7e-22 107.5 63 74.6
Nn1g09026 Nelumbo nucifera HOM05D000002 ORTHO05D000047 2.0e-20 102.1 75 60.0
Thecc.09G280000 Theobroma cacao HOM05D000002 ORTHO05D000047 2.0e-20 102.1 63 68.3
Thecc.03G173700 Theobroma cacao HOM05D000002 ORTHO05D000047 4.8e-19 97.4 63 68.3
Nn5g29455 Nelumbo nucifera HOM05D000002 ORTHO05D000047 1.6e-14 82.4 64 57.8
Nn1g06236 Nelumbo nucifera HOM05D000002 ORTHO05D000047 2.7e-14 81.6 74 52.7
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 3.7e-11 71.2 74 37.8
Thecc.09G200500 Theobroma cacao HOM05D000002 ORTHO05D000047 1.8e-10 68.9 44 72.7
Sabra17G0008600 Salix brachista HOM05D000002 ORTHO05D000047 2.4e-10 68.6 74 37.8
Sabra19G0055400 Salix brachista HOM05D000002 ORTHO05D000047 7.0e-10 67.0 74 37.8
Thecc.05G245400 Theobroma cacao HOM05D000002 ORTHO05D000047 4.5e-09 64.3 49 57.1
EL10Ac6g14842 Beta vulgaris HOM05D000002 ORTHO05D000047 7.7e-09 63.5 70 40.0
Lalb_Chr03g0040131 Lupinus albus HOM05D000002 ORTHO05D000047 1.7e-08 62.4 70 32.9
Ca_14310_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000047 2.2e-08 62.0 70 37.1
TPR.G14079 Trifolium pratense HOM05D000002 ORTHO05D000047 3.8e-08 61.2 72 36.1
TPR.G33357 Trifolium pratense HOM05D000002 ORTHO05D000047 6.5e-08 60.5 72 34.7
SHI00431 Sapria himalayana HOM05D000002 ORTHO05D000047 1.1e-07 59.7 70 32.9
CANSAT54G1758 Cannabis sativa HOM05D000002 ORTHO05D000047 1.9e-07 58.9 74 40.5
Thecc.01G196100 Theobroma cacao HOM05D000002 ORTHO05D000047 1.9e-07 58.9 34 67.6
TPR.G28102 Trifolium pratense HOM05D000002 ORTHO05D000047 1.9e-07 58.9 72 31.9
CANSAT50G0003 Cannabis sativa HOM05D000002 ORTHO05D000047 2.5e-07 58.5 70 32.9
ECA238G4221 Erigeron canadensis HOM05D000002 ORTHO05D000047 2.5e-07 58.5 74 33.8
Manes.08G112311 Manihot esculenta HOM05D000002 ORTHO05D000047 2.5e-07 58.5 70 41.4
TPR.G28040 Trifolium pratense HOM05D000002 ORTHO05D000047 3.2e-07 58.2 72 34.7
TPR.G32024 Trifolium pratense HOM05D000002 ORTHO05D000047 3.2e-07 58.2 74 31.1
CANSAT56G4400 Cannabis sativa HOM05D000002 ORTHO05D000047 4.2e-07 57.8 70 35.7
TPR.G9663 Trifolium pratense HOM05D000002 ORTHO05D000047 4.2e-07 57.8 70 34.3
CANSAT21G0691 Cannabis sativa HOM05D000002 ORTHO05D000047 5.5e-07 57.4 74 36.5
CANSAT35G1454 Cannabis sativa HOM05D000002 ORTHO05D000047 5.5e-07 57.4 74 39.2
TPR.G15993 Trifolium pratense HOM05D000002 ORTHO05D000001 5.5e-07 57.4 74 32.4
CANSAT01G1064 Cannabis sativa HOM05D000002 ORTHO05D000047 7.2e-07 57.0 70 38.6
VMungo0720G2943 Vigna mungo HOM05D001260 ORTHO05D002424 7.2e-07 57.0 72 40.3
CANSAT01G0665 Cannabis sativa HOM05D000002 ORTHO05D000047 9.4e-07 56.6 70 31.4
CANSAT54G0982 Cannabis sativa HOM05D000002 ORTHO05D000047 9.4e-07 56.6 74 28.4
Hma1.2p1_0222F.1_g093830 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 9.4e-07 56.6 70 32.9
CANSAT56G1277 Cannabis sativa HOM05D000002 ORTHO05D000047 1.2e-06 56.2 70 34.3
HanXRQChr14g0435441 Helianthus annuus HOM05D000002 ORTHO05D000047 1.2e-06 56.2 74 33.8
SHI17648 Sapria himalayana HOM05D000002 ORTHO05D000047 1.2e-06 56.2 70 31.4
TPR.G835 Trifolium pratense HOM05D000002 ORTHO05D000047 1.2e-06 56.2 70 34.3
CANSAT54G2094 Cannabis sativa HOM05D000002 ORTHO05D000047 1.6e-06 55.8 74 35.1
Cpa.g.sc156.7 Carica papaya HOM05D000002 ORTHO05D000047 1.6e-06 55.8 74 31.1
Hma1.2p1_1643F.1_g295170 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.6e-06 55.8 70 32.9
Lalb_Chr19g0135971 Lupinus albus HOM05D000002 ORTHO05D000047 1.6e-06 55.8 72 34.7
TPR.G39925 Trifolium pratense HOM05D000002 ORTHO05D000047 1.6e-06 55.8 74 36.5
CANSAT01G1817 Cannabis sativa HOM05D000002 ORTHO05D000047 2.1e-06 55.5 74 35.1
CANSAT80G2070 Cannabis sativa HOM05D000002 ORTHO05D000047 2.1e-06 55.5 74 35.1
Cpa.g.sc0.138 Carica papaya HOM05D000002 ORTHO05D000047 2.1e-06 55.5 74 29.7
Cpa.g.sc1166.2 Carica papaya HOM05D000002 ORTHO05D000047 2.1e-06 55.5 74 29.7
MD17G1267900 Malus domestica HOM05D000002 ORTHO05D000001 2.1e-06 55.5 74 28.4
THA.LOC104809118 Tarenaya hassleriana HOM05D000002 ORTHO05D000047 2.1e-06 55.5 70 31.4
THA.LOC104820214 Tarenaya hassleriana HOM05D000002 ORTHO05D000047 2.1e-06 55.5 70 31.4
TPR.G35227 Trifolium pratense HOM05D000002 ORTHO05D000047 2.1e-06 55.5 74 33.8
arahy.Tifrunner.gnm1.ann1.9G4WKJ Arachis hypogaea HOM05D000002 ORTHO05D000047 2.7e-06 55.1 74 33.8
Cpa.g.sc44.88 Carica papaya HOM05D000002 ORTHO05D000047 2.7e-06 55.1 74 29.7
TPR.G343 Trifolium pratense HOM05D000002 ORTHO05D000047 2.7e-06 55.1 70 35.7
QL11p054840 Quercus lobata HOM05D000002 ORTHO05D000001 3.6e-06 54.7 74 29.7
CANSAT54G0702 Cannabis sativa HOM05D000002 ORTHO05D000047 4.7e-06 54.3 74 35.1
Cpa.g.sc122.14 Carica papaya HOM05D000002 ORTHO05D000047 4.7e-06 54.3 74 28.4
AUR62013442 Chenopodium quinoa HOM05D000002 ORTHO05D000047 4.7e-06 54.3 70 34.3
Sabra16G0105400 Salix brachista HOM05D000002 ORTHO05D000047 4.7e-06 54.3 70 34.3
Sabra16G0264600 Salix brachista HOM05D000002 ORTHO05D000047 4.7e-06 54.3 70 32.9
TPR.G27746 Trifolium pratense HOM05D000002 ORTHO05D000047 4.7e-06 54.3 70 32.9
CANSAT25G0406 Cannabis sativa HOM05D000002 ORTHO05D000047 8.0e-06 53.5 74 33.8
Psat0s193g0280 Pisum sativum HOM05D000002 ORTHO05D000047 8.0e-06 53.5 71 32.4
Sopen11g025380 Solanum pennellii HOM05D000002 ORTHO05D000001 8.0e-06 53.5 74 29.7
VMungo1383G2229 Vigna mungo HOM05D000002 ORTHO05D000001 8.0e-06 53.5 66 39.4


User provided reference genes

Program Settings