Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.6e-121 439.5 230 100.0
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.0e-91 340.5 248 73.8
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.7e-86 323.2 248 71.0
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.2e-86 322.8 248 71.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 5.9e-84 314.7 249 68.7
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 2.2e-83 312.8 248 69.8
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.8e-80 303.1 249 66.7
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 7.7e-76 287.7 251 61.8
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 7.7e-76 287.7 223 67.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 2.2e-75 286.2 223 67.3
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 2.2e-75 286.2 248 60.9
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.8e-75 285.4 247 61.1
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.8e-75 285.4 249 61.0
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.1e-74 283.9 247 61.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.5e-74 283.5 222 66.2
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 9.4e-74 280.8 247 60.7
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 9.4e-74 280.8 249 60.2
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.2e-73 280.4 249 59.8
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 2.1e-73 279.6 247 58.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 2.7e-73 279.3 227 64.8
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 8.0e-73 277.7 248 64.5
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.0e-72 277.3 223 65.5
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.4e-72 276.9 221 65.2
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.4e-72 276.9 248 58.9
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.8e-72 276.6 247 59.9
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.3e-72 276.2 223 65.5
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 5.2e-72 275.0 244 60.2
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 8.8e-72 274.2 223 62.3
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.0e-71 273.1 246 59.3
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 2.6e-71 272.7 223 61.4
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 3.4e-71 272.3 220 64.1
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 9.8e-71 270.8 247 59.1
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 9.8e-71 270.8 247 57.5
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.7e-70 270.0 223 61.0
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.2e-70 269.6 223 64.1
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.8e-70 269.2 223 61.0
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 4.8e-70 268.5 246 63.0
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 6.3e-70 268.1 223 63.7
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 8.3e-70 267.7 246 60.6
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.8e-69 266.5 223 62.8
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.8e-69 266.5 223 63.7
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.4e-69 266.2 248 57.7
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.4e-69 266.2 248 57.7
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.4e-69 265.0 223 62.3
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 9.1e-69 264.2 250 56.8
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.2e-68 263.8 251 56.2
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.6e-68 263.5 223 61.0
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.0e-68 263.1 224 61.2
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.5e-68 262.3 251 56.6
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 3.5e-68 262.3 224 63.8
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 4.5e-68 261.9 224 62.5
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 5.9e-68 261.5 249 56.6
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.0e-67 260.8 222 61.7
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.3e-67 260.4 225 60.9
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.7e-67 260.0 223 61.9
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 2.9e-67 259.2 222 61.7
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 8.6e-67 257.7 223 61.9
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 8.6e-67 257.7 224 62.5
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.1e-66 257.3 224 60.7
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.3e-66 255.8 225 60.4
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 5.5e-66 255.0 253 56.1
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 5.5e-66 255.0 224 59.8
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.2e-66 254.6 224 59.4
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 9.5e-66 254.2 225 59.1
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.6e-65 253.4 224 60.7
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.6e-65 253.4 223 59.6
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.1e-65 253.1 219 61.2
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.8e-65 252.7 225 58.7
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 2.8e-65 252.7 226 60.2
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 2.8e-65 252.7 223 59.2
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 6.1e-65 251.5 225 58.2
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 6.1e-65 251.5 225 58.2
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 8.0e-65 251.1 225 60.0
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.0e-64 250.8 222 59.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.0e-64 250.8 219 59.8
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.4e-64 250.4 223 59.6
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.4e-64 250.4 219 60.7
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 1.8e-64 250.0 225 57.8
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.0e-64 248.8 222 59.5
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 5.2e-64 248.4 225 60.9
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 2.6e-63 246.1 224 58.9
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.8e-63 244.2 247 55.1
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.3e-62 243.8 223 58.7
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.7e-62 243.4 223 58.7
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.7e-62 243.4 223 58.7
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.8e-62 242.7 218 61.5
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.8e-62 242.7 223 58.3
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 8.3e-62 241.1 247 54.7
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.4e-61 240.4 210 61.0
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 2.4e-61 239.6 224 58.5
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 4.1e-61 238.8 229 56.8
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.2e-60 237.3 247 53.0
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.2e-60 237.3 225 57.3
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.0e-60 236.5 221 57.5
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 2.7e-60 236.1 218 58.3
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 4.5e-60 235.3 215 59.5
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 3.9e-59 232.3 248 52.8
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 3.3e-58 229.2 219 57.1
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 4.3e-58 228.8 220 56.8
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 9.5e-58 227.6 225 55.1
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.6e-57 226.9 207 58.9
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.8e-57 226.1 223 54.7
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 4.0e-56 222.2 226 54.9
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 8.9e-56 221.1 223 54.7
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.5e-55 220.3 228 54.4
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.3e-54 214.5 222 54.1
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.2e-53 212.6 209 54.1
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.2e-53 212.6 209 54.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.4e-53 211.8 163 67.5
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 5.4e-53 211.8 226 55.3
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 7.0e-53 211.5 231 52.8
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 2.7e-52 209.5 198 56.6
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.5e-52 209.1 201 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 6.0e-52 208.4 222 52.7
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 6.0e-52 208.4 226 52.7
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.0e-51 207.6 186 59.1
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.3e-51 206.5 247 49.0
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 3.0e-51 206.1 206 54.9
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 8.0e-49 198.0 223 50.2
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.1e-48 197.6 181 57.5
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.4e-48 197.2 223 47.5
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 3.4e-47 192.6 196 55.6
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.4e-45 185.3 220 49.1
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-43 179.9 174 56.9
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 5.1e-43 178.7 234 48.3
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 9.5e-42 174.5 186 55.4
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 4.7e-41 172.2 243 42.8
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-40 170.6 145 60.7
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 4.0e-40 169.1 180 55.6
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 7.5e-39 164.9 231 45.5
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 9.9e-39 164.5 226 45.6
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 4.9e-38 162.2 168 56.5
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 8.3e-38 161.4 202 45.5
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.1e-37 159.1 195 45.1
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 5.4e-37 158.7 132 60.6
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.2e-36 157.5 178 48.9
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 6.0e-36 155.2 146 54.8
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-34 150.6 132 59.1
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.6e-34 148.7 135 57.0
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.8e-33 146.4 130 59.2
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 6.2e-33 145.2 156 52.6
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 6.2e-33 145.2 156 52.6
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 4.0e-32 142.5 155 52.3
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 8.9e-32 141.4 123 62.6
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 4.9e-30 135.6 141 55.3
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 1.4e-29 134.0 112 63.4
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.4e-29 133.3 133 48.9
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 4.2e-29 132.5 81 69.1
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.0e-27 127.9 107 63.6
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.5e-23 114.0 59 79.7
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 5.8e-23 112.1 128 43.8
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 8.1e-17 91.7 56 69.6
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.4e-16 90.9 91 58.2
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 3.1e-16 89.7 87 58.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 5.3e-16 89.0 50 76.0
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.2e-15 87.8 89 55.1
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 2.6e-15 86.7 53 64.2
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.2e-14 83.6 61 60.7
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 3.8e-14 82.8 154 34.4
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 1.9e-13 80.5 200 29.0
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.4e-13 80.1 85 51.8
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 3.9e-11 72.8 38 76.3
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 3.9e-11 72.8 142 33.8
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.1e-09 67.0 200 30.0
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.1e-08 63.2 94 45.7
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 2.2e-06 57.0 75 45.3
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 6.4e-06 55.5 170 27.1


User provided reference genes

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