Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 3.5e-95 352.4 319 100.0
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 3.0e-86 322.8 176 93.2
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 5.7e-85 318.5 176 90.3
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.4e-83 313.9 176 89.8
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.4e-83 313.9 176 89.8
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 2.9e-81 306.2 176 86.4
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 1.4e-80 303.9 174 87.4
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 5.5e-80 302.0 172 86.6
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 1.0e-78 297.7 174 86.2
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 1.4e-78 297.4 172 85.5
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 3.9e-78 295.8 174 83.9
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 3.9e-78 295.8 173 85.5
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 6.7e-78 295.0 173 86.7
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 8.8e-78 294.7 174 85.6
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 8.8e-78 294.7 174 84.5
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 2.0e-77 293.5 172 82.6
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 4.3e-77 292.4 172 84.9
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 7.4e-77 291.6 174 83.3
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 7.4e-77 291.6 173 82.7
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 9.7e-77 291.2 174 82.8
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.7e-76 290.4 174 84.5
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.7e-76 290.4 174 84.5
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.2e-76 290.0 174 82.2
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 2.8e-76 289.7 171 84.2
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 2.8e-76 289.7 174 83.3
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 4.8e-76 288.9 169 84.0
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 4.8e-76 288.9 174 83.3
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 4.8e-76 288.9 172 83.1
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 6.3e-76 288.5 168 85.1
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.2e-76 288.1 168 84.5
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 8.2e-76 288.1 174 82.8
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 1.8e-75 287.0 174 81.0
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.8e-75 287.0 172 83.1
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.4e-75 286.6 174 82.8
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.1e-75 285.8 168 83.9
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 6.9e-75 285.0 174 82.8
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 6.9e-75 285.0 174 82.8
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 2.0e-74 283.5 174 80.5
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.6e-74 283.1 173 83.2
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 3.4e-74 282.7 172 82.0
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 3.4e-74 282.7 173 82.7
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 5.9e-74 282.0 170 82.9
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 1.3e-73 280.8 169 82.8
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.3e-73 280.8 174 80.5
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 2.2e-73 280.0 172 81.4
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 2.9e-73 279.6 172 82.6
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 2.9e-73 279.6 174 80.5
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 3.8e-73 279.3 173 81.5
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 3.8e-73 279.3 174 81.0
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 2.5e-72 276.6 175 78.3
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 4.2e-72 275.8 175 78.3
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 2.7e-71 273.1 174 79.3
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.0e-70 271.2 174 78.7
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 1.8e-70 270.4 172 79.7
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 6.7e-70 268.5 221 65.6
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 6.7e-70 268.5 176 76.7
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 4.4e-69 265.8 172 79.7
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 4.4e-69 265.8 174 76.4
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 5.7e-69 265.4 170 79.4
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 5.7e-69 265.4 170 79.4
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 7.4e-69 265.0 174 77.0
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 9.7e-69 264.6 176 75.0
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.7e-68 263.8 169 77.5
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.2e-68 263.5 174 76.4
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.2e-68 263.5 174 76.4
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.2e-68 263.5 174 76.4
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.2e-68 263.5 174 76.4
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.2e-68 263.5 174 76.4
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.4e-67 260.8 206 68.9
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 4.1e-67 259.2 174 75.3
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 7.0e-67 258.5 174 74.7
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 7.0e-67 258.5 174 74.7
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 4.5e-66 255.8 172 73.8
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 7.7e-66 255.0 171 74.3
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 2.2e-65 253.4 170 76.5
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.2e-65 253.4 172 75.0
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 5.0e-65 252.3 202 65.3
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 2.5e-64 250.0 198 66.7
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 2.1e-63 246.9 174 71.8
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 3.6e-63 246.1 166 69.9
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 2.3e-62 243.4 171 74.9
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 4.0e-62 242.7 170 72.4
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 3.3e-61 239.6 150 82.0
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 7.5e-61 238.4 166 73.5
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.3e-60 237.7 149 82.6
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 2.2e-60 236.9 169 71.6
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 2.2e-60 236.9 168 72.6
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.1e-59 233.0 193 66.3
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 3.1e-59 233.0 160 77.5
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 2.2e-57 226.9 156 73.1
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 6.5e-57 225.3 152 77.6
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 6.5e-57 225.3 166 66.3
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 8.5e-57 224.9 150 76.0
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 6.3e-52 208.8 175 58.9
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.1e-51 208.0 168 61.9
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.2e-50 204.5 149 69.1
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 5.5e-48 195.7 131 71.0
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.7e-45 185.7 118 81.4
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 4.1e-35 152.9 73 93.2
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 2.3e-33 147.1 93 86.0
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 5.6e-32 142.5 108 71.3
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 5.6e-32 142.5 108 71.3
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 1.3e-28 131.3 71 81.7
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.7e-28 131.0 65 89.2
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.9e-27 127.5 96 66.7
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 4.1e-27 126.3 124 58.9
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 1.7e-25 120.9 163 42.9
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 2.1e-23 114.0 171 38.6
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 4.0e-22 109.8 71 69.0
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 1.2e-18 98.2 79 70.9
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 3.5e-18 96.7 69 78.3
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 4.6e-18 96.3 78 73.1
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 3.0e-17 93.6 78 70.5
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 5.1e-17 92.8 67 70.1
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.4e-14 84.7 64 70.3
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 7.6e-13 79.0 51 86.3
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 4.1e-11 73.2 64 67.2
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.0e-10 69.3 32 90.6
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 7.8e-10 68.9 40 85.0
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 2.1e-07 60.8 37 81.1
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 2.4e-06 57.4 50 74.0


User provided reference genes

Program Settings