Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G080600 Theobroma cacao HOM05D008483 ORTHO05D010726 2.1e-152 543.9 272 100.0
Duzib213G0258 Durio zibethinus HOM05D008483 ORTHO05D010726 2.3e-114 417.5 271 76.8
Gohir.A01G064800 Gossypium hirsutum HOM05D008483 ORTHO05D010726 3.9e-74 283.9 244 60.7
Gohir.D01G051900 Gossypium hirsutum HOM05D008483 ORTHO05D010726 4.3e-73 280.4 244 60.7
Gorai.002G071800 Gossypium raimondii HOM05D008483 ORTHO05D010726 3.7e-72 277.3 244 59.8
Cpa.g.sc137.16 Carica papaya HOM05D008483 ORTHO05D010726 3.2e-68 264.2 286 49.0
Potri.015G036400 Populus trichocarpa HOM05D008483 ORTHO05D010726 1.4e-63 248.8 256 46.1
Sabra15G0030100 Salix brachista HOM05D008483 ORTHO05D010726 3.1e-63 247.7 256 46.9
Haze_21313 Corylus avellana HOM05D003774 ORTHO05D009174 1.0e-61 242.7 253 47.8
Sabra15G0031000 Salix brachista HOM05D008483 ORTHO05D010726 1.0e-61 242.7 256 46.1
Cfa012968 Carpinus fangiana HOM05D008483 ORTHO05D010726 2.9e-61 241.1 245 48.2
MD12G1033400 Malus domestica HOM05D008483 ORTHO05D010726 2.4e-55 221.5 245 47.3
CSS0019242 Camellia sinensis var. sinensis HOM05D008483 ORTHO05D010726 2.2e-53 214.9 263 45.2
CSS0039397 Camellia sinensis var. sinensis HOM05D008483 ORTHO05D010726 2.2e-53 214.9 263 45.2
Prupe.1G555500 Prunus persica HOM05D008483 ORTHO05D010726 8.5e-53 213.0 238 47.9
THA.LOC104812723 Tarenaya hassleriana HOM05D008483 ORTHO05D010726 3.2e-52 211.1 269 43.9
GSVIVG01022790001 Vitis vinifera HOM05D008483 ORTHO05D010726 1.2e-51 209.1 266 42.5
TWI60G0009 Tripterygium wilfordii HOM05D008483 ORTHO05D010726 2.0e-49 201.8 258 40.7
Hma1.2p1_1933F.1_g308065 Hydrangea macrophylla HOM05D008483 ORTHO05D010726 2.8e-48 198.0 258 41.1
DCAR_008181 Daucus carota HOM05D008483 ORTHO05D010726 6.3e-48 196.8 258 42.6
Prupe.1G569400 Prunus persica HOM05D008483 ORTHO05D010726 5.3e-47 193.7 245 44.5
Lsat_1_v5_gn_3_23061 Lactuca sativa HOM05D008483 ORTHO05D010726 1.4e-42 179.1 271 39.5
Cc08_g05050 Coffea canephora HOM05D008483 ORTHO05D010726 1.2e-41 176.0 265 37.4
Sp1g27550 Schrenkiella parvula HOM05D008483 ORTHO05D010726 3.4e-41 174.5 267 38.2
MBI16_g32672_MAGBIO Magnolia biondii HOM05D008483 ORTHO05D010726 1.3e-40 172.6 221 39.8
Aa31LG2G14190 Aethionema arabicum HOM05D008483 ORTHO05D010726 6.3e-40 170.2 264 40.9
Oeu019187.1 Olea europaea HOM05D008483 ORTHO05D010726 2.4e-39 168.3 245 41.2
AT1G31840 Arabidopsis thaliana HOM05D008483 ORTHO05D010726 5.3e-39 167.2 268 37.3
Thhalv10009444m.g Eutrema salsugineum HOM05D008483 ORTHO05D010726 4.5e-38 164.1 263 39.5
Actinidia18161 Actinidia chinensis HOM05D008483 ORTHO05D010726 1.7e-37 162.2 244 38.9
Nn8g41093 Nelumbo nucifera HOM05D008483 ORTHO05D010726 1.5e-36 159.1 222 39.2
EL10Ac5g11926 Beta vulgaris HOM05D008483 ORTHO05D010726 1.4e-34 152.5 240 37.9
Ciclev10003653m.g Citrus clementina HOM05D008483 ORTHO05D010726 4.0e-34 151.0 213 38.0
HanXRQChr17g0536561 Helianthus annuus HOM05D008483 ORTHO05D010726 1.2e-33 149.4 255 35.7
AUR62027321 Chenopodium quinoa HOM05D008483 ORTHO05D010726 1.5e-33 149.1 257 36.6
Ciclev10013671m.g Citrus clementina HOM05D008483 ORTHO05D010726 3.4e-33 147.9 216 35.6
AUR62007411 Chenopodium quinoa HOM05D008483 ORTHO05D010726 4.4e-33 147.5 257 35.4
Carub.0001s3017 Capsella rubella HOM05D008483 ORTHO05D010726 2.4e-31 141.7 192 38.0
Rhsim12G0158300 Rhododendron simsii HOM05D008483 ORTHO05D010726 2.4e-31 141.7 181 41.4
Nitab4.5_0000030g0110 Nicotiana tabacum HOM05D008483 ORTHO05D010726 3.1e-31 141.4 214 37.9
Nitab4.5_0002941g0070 Nicotiana tabacum HOM05D008483 ORTHO05D010726 3.1e-31 141.4 242 36.8
TAR381G0371 Trochodendron aralioides HOM05D008483 ORTHO05D010726 3.1e-31 141.4 159 45.9
Hma1.2p1_0560F.1_g178890 Hydrangea macrophylla HOM05D008483 ORTHO05D010726 8.0e-27 126.7 176 38.6
MBI13_g10040_MAGBIO Magnolia biondii HOM05D008483 ORTHO05D010726 8.0e-27 126.7 178 39.3
Eucgr.A00288 Eucalyptus grandis HOM05D008483 ORTHO05D010726 4.9e-24 117.5 199 34.7
ECA246G3844 Erigeron canadensis HOM05D008483 ORTHO05D010726 5.9e-22 110.5 180 33.9
ATR1089G063 Amborella trichopoda HOM05D008483 ORTHO05D010726 2.8e-19 101.7 185 30.8
AL1G45930 Arabidopsis lyrata HOM05D008483 ORTHO05D010726 2.0e-17 95.5 102 49.0
RcHm_v2.0_Chr2g0139321 Rosa chinensis HOM05D008483 ORTHO05D010726 1.9e-12 79.0 154 31.2
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.3e-12 78.2 207 28.5
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 9.5e-12 76.6 179 30.7
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 2.1e-11 75.5 215 27.9
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.8e-11 75.1 192 28.6
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 4.7e-11 74.3 197 27.4
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 6.2e-11 73.9 203 29.1
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.1e-10 73.2 192 28.1
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 3.1e-10 71.6 207 29.0
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 3.1e-10 71.6 233 24.5
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 4.0e-10 71.2 239 24.3
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 5.2e-10 70.9 221 26.7
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 8.9e-10 70.1 207 28.5
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 8.9e-10 70.1 200 27.0
ATR0810G198 Amborella trichopoda HOM05D007455 ORTHO05D006600 1.2e-09 69.7 231 25.5
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 1.2e-09 69.7 216 27.3
Cc09_g03920 Coffea canephora HOM05D007358 ORTHO05D009117 2.6e-09 68.6 197 31.0
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 4.4e-09 67.8 215 23.7
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 5.8e-09 67.4 165 30.9
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 7.5e-09 67.0 198 26.3
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 9.8e-09 66.6 210 27.1
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 9.8e-09 66.6 149 31.5
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 1.7e-08 65.9 225 26.2
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 2.2e-08 65.5 212 25.5
AL1G31880 Arabidopsis lyrata HOM05D007639 ORTHO05D009509 2.9e-08 65.1 199 25.1
Manes.05G164100 Manihot esculenta HOM05D007639 ORTHO05D009509 2.9e-08 65.1 154 29.9
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.7e-08 64.7 184 28.8
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 3.7e-08 64.7 181 23.2
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 6.4e-08 63.9 172 25.6
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 8.3e-08 63.5 152 32.2
CSS0022172 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 1.1e-07 63.2 209 25.8
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 1.1e-07 63.2 197 28.9
FvH4_2g40380 Fragaria vesca HOM05D007639 ORTHO05D009509 1.4e-07 62.8 169 26.0
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 1.4e-07 62.8 187 26.2
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.9e-07 62.4 249 22.1
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 1.9e-07 62.4 221 21.7
Potri.017G071600 Populus trichocarpa HOM05D007358 ORTHO05D009117 2.4e-07 62.0 147 28.6
RcHm_v2.0_Chr2g0173011 Rosa chinensis HOM05D007358 ORTHO05D009117 3.2e-07 61.6 173 27.7
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 4.1e-07 61.2 188 25.0
Manes.17G021400 Manihot esculenta HOM05D007358 ORTHO05D009117 4.1e-07 61.2 147 29.3
Ciclev10018361m.g Citrus clementina HOM05D007358 ORTHO05D009117 5.4e-07 60.8 126 32.5
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 5.4e-07 60.8 162 30.9
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 5.4e-07 60.8 200 28.5
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 5.4e-07 60.8 225 25.3
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 7.1e-07 60.5 184 26.6
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 7.1e-07 60.5 180 22.8
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.1e-07 60.5 195 25.1
MELO3C003888.2 Cucumis melo HOM05D007639 ORTHO05D009509 9.2e-07 60.1 130 29.2
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 1.2e-06 59.7 239 27.6
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 1.2e-06 59.7 171 25.7
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 1.6e-06 59.3 218 24.3
Duzib235G0255 Durio zibethinus HOM05D002890 ORTHO05D009847 2.1e-06 58.9 176 25.0
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 2.1e-06 58.9 200 28.0
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 2.1e-06 58.9 233 21.5
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 2.1e-06 58.9 155 27.1
CsaV3_3G044860 Cucumis sativus L. HOM05D007639 ORTHO05D009509 2.7e-06 58.5 130 28.5
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 3.5e-06 58.2 186 24.2
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 3.5e-06 58.2 208 24.0
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 3.5e-06 58.2 135 31.9
RcHm_v2.0_Chr6g0300361 Rosa chinensis HOM05D007639 ORTHO05D009509 6.0e-06 57.4 165 25.5
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 7.8e-06 57.0 205 27.3
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 7.8e-06 57.0 225 25.3


User provided reference genes

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