Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 7.3e-26 119.8 60 100.0
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 5.8e-23 110.2 60 90.0
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 4.9e-22 107.1 58 87.9
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 1.4e-21 105.5 60 85.0
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 7.0e-21 103.2 60 83.3
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 1.6e-20 102.1 57 82.5
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 3.5e-20 100.9 61 85.2
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 7.8e-20 99.8 60 78.3
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 1.3e-19 99.0 53 88.7
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 2.3e-19 98.2 60 76.7
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 3.9e-19 97.4 60 76.7
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 3.9e-19 97.4 58 77.6
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 3.9e-19 97.4 56 80.4
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 3.9e-19 97.4 56 80.4
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 8.6e-19 96.3 60 78.3
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 1.5e-18 95.5 55 81.8
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 1.9e-18 95.1 60 76.7
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 1.9e-18 95.1 60 76.7
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 1.9e-18 95.1 60 78.3
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 5.6e-18 93.6 57 77.2
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 5.6e-18 93.6 63 73.0
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 9.5e-18 92.8 61 78.7
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 1.2e-17 92.4 60 73.3
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 1.6e-17 92.0 60 75.0
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 2.8e-17 91.3 54 77.8
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 4.7e-17 90.5 61 72.1
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 6.2e-17 90.1 61 73.8
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 8.1e-17 89.7 55 76.4
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 1.1e-16 89.4 60 70.0
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 1.1e-16 89.4 55 78.2
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 1.1e-16 89.4 59 74.6
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 1.1e-16 89.4 52 80.8
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 1.8e-16 88.6 58 72.4
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 1.8e-16 88.6 58 74.1
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 2.3e-16 88.2 53 79.2
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 2.3e-16 88.2 60 70.0
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 3.1e-16 87.8 58 72.4
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 5.2e-16 87.0 57 73.7
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 5.2e-16 87.0 60 68.3
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 5.2e-16 87.0 54 75.9
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 5.2e-16 87.0 53 75.5
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 6.8e-16 86.7 54 74.1
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 6.8e-16 86.7 54 74.1
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 6.8e-16 86.7 54 74.1
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 6.8e-16 86.7 46 87.0
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 6.8e-16 86.7 51 76.5
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 6.8e-16 86.7 61 68.9
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 1.2e-15 85.9 61 70.5
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 1.2e-15 85.9 53 71.7
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 1.5e-15 85.5 59 69.5
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 2.0e-15 85.1 60 68.3
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 2.6e-15 84.7 53 71.7
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 2.6e-15 84.7 53 71.7
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 2.6e-15 84.7 53 71.7
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 3.4e-15 84.3 53 71.7
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 3.4e-15 84.3 53 71.7
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 4.4e-15 84.0 58 69.0
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 5.8e-15 83.6 52 76.9
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 5.8e-15 83.6 60 61.7
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 7.5e-15 83.2 46 80.4
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 7.5e-15 83.2 46 80.4
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 7.5e-15 83.2 60 66.7
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 9.8e-15 82.8 54 68.5
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 1.3e-14 82.4 57 64.9
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 2.9e-14 81.3 52 69.2
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 8.3e-14 79.7 51 76.5
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 8.3e-14 79.7 51 76.5
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 1.1e-13 79.3 62 64.5
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 1.1e-13 79.3 46 78.3
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 2.4e-13 78.2 63 61.9
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 4.1e-13 77.4 46 73.9
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 1.2e-12 75.9 42 81.0
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 2.1e-12 75.1 56 66.1
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 4.6e-12 73.9 54 66.7
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 1.0e-11 72.8 43 74.4
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 1.9e-10 68.6 45 66.7
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 2.5e-10 68.2 52 61.5
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 9.5e-10 66.2 49 69.4
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 1.6e-09 65.5 47 63.8
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 1.8e-08 62.0 59 62.7
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 9.9e-07 56.2 43 53.5
SalBow7G4816 Salvia bowleyana HOM05D007573 ORTHO05D009938 2.2e-06 55.1 91 38.5
Gorai.007G068000 Gossypium raimondii HOM05D058595 ORTHO05D047936 8.4e-06 53.1 29 89.7


User provided reference genes

Program Settings