Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 5.9e-34 147.5 108 100.0
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.5e-24 115.5 102 89.2
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.2e-23 113.2 102 90.2
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 4.7e-23 111.3 102 88.2
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 8.8e-22 107.1 100 83.0
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.0e-21 105.9 102 86.3
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 4.4e-21 104.8 102 80.4
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.7e-21 104.4 102 83.3
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 7.4e-21 104.0 102 82.4
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 7.4e-21 104.0 102 81.4
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.3e-20 103.2 102 82.4
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.7e-20 102.8 102 82.4
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 2.2e-20 102.4 101 75.2
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 2.8e-20 102.1 102 80.4
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 3.7e-20 101.7 100 80.0
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 6.3e-20 100.9 100 67.0
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 1.1e-19 100.1 102 78.4
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.1e-19 100.1 102 78.4
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 1.4e-19 99.8 102 74.5
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.4e-19 99.8 102 80.4
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 2.4e-19 99.0 98 56.1
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.4e-19 99.0 102 79.4
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 2.4e-19 99.0 100 56.0
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 2.4e-19 99.0 100 80.0
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.1e-19 98.6 100 80.0
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 9.1e-19 97.1 102 78.4
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.5e-18 96.3 102 78.4
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 2.6e-18 95.5 100 79.0
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 2.6e-18 95.5 100 79.0
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.6e-18 95.5 102 51.0
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 2.6e-18 95.5 102 78.4
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 2.6e-18 95.5 102 79.4
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 7.7e-18 94.0 100 77.0
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 7.7e-18 94.0 98 80.6
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.3e-17 93.2 100 79.0
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 1.7e-17 92.8 102 78.4
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 1.7e-17 92.8 102 77.5
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 2.2e-17 92.4 102 79.4
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 3.8e-17 91.7 101 76.2
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 3.8e-17 91.7 101 76.2
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 3.8e-17 91.7 102 75.5
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.0e-17 91.3 100 73.0
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 5.0e-17 91.3 102 77.5
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 5.0e-17 91.3 102 78.4
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 8.5e-17 90.5 100 76.0
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.1e-16 90.1 98 78.6
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.9e-16 89.4 102 72.5
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 3.2e-16 88.6 98 73.5
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 3.2e-16 88.6 102 76.5
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 3.2e-16 88.6 100 76.0
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 5.5e-16 87.8 102 75.5
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.5e-16 87.8 102 73.5
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 9.4e-16 87.0 102 72.5
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 9.4e-16 87.0 100 75.0
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 9.4e-16 87.0 101 75.2
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 1.2e-15 86.7 102 75.5
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.6e-15 86.3 47 89.4
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.6e-15 86.3 101 74.3
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 1.6e-15 86.3 98 73.5
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 2.1e-15 85.9 102 74.5
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 2.1e-15 85.9 101 74.3
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.1e-15 85.9 99 75.8
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 2.1e-15 85.9 102 74.5
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 2.1e-15 85.9 102 74.5
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 3.6e-15 85.1 97 76.3
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 3.6e-15 85.1 101 73.3
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 4.7e-15 84.7 97 76.3
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 1.0e-14 83.6 97 76.3
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.0e-14 83.6 100 76.0
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.8e-14 82.8 102 75.5
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 3.9e-14 81.6 98 58.2
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 5.2e-14 81.3 46 87.0
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 6.7e-14 80.9 47 80.9
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 8.8e-14 80.5 95 70.5
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 1.1e-13 80.1 47 78.7
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 1.1e-13 80.1 47 78.7
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 1.1e-13 80.1 47 78.7
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 2.0e-13 79.3 44 88.6
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 4.4e-13 78.2 102 70.6
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 5.7e-13 77.8 117 41.0
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 9.7e-13 77.0 98 58.2
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 9.7e-13 77.0 97 44.3
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.3e-12 76.6 100 69.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.7e-12 76.3 98 74.5
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 1.7e-12 76.3 98 70.4
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 2.4e-11 72.4 46 80.4
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 5.9e-10 67.8 98 68.4
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 5.9e-10 67.8 100 67.0
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.3e-09 66.6 78 82.1
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.3e-09 66.6 41 80.5
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.3e-09 66.6 99 50.5
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 8.5e-09 63.9 76 81.6
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 2.7e-07 58.9 77 76.6
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 3.6e-07 58.5 41 70.7
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 4.0e-06 55.1 80 71.2
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 8.8e-06 53.9 76 76.3


User provided reference genes

Program Settings