Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 4.1e-75 284.6 143 100.0
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 1.8e-62 242.7 141 87.9
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.8e-59 232.6 143 84.6
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.4e-59 232.3 143 84.6
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.1e-59 231.5 143 83.9
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.1e-59 231.5 143 83.9
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.1e-59 231.5 143 83.9
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.0e-59 230.7 143 83.9
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-58 229.9 143 83.2
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-58 229.9 143 83.2
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.6e-58 229.6 143 83.2
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.5e-58 228.4 143 83.2
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.5e-57 223.8 147 80.3
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.2e-55 219.9 143 81.1
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.6e-55 219.5 143 81.8
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.6e-55 219.5 143 81.1
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.0e-55 217.2 143 80.4
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 3.3e-53 211.8 123 87.0
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.0e-49 200.3 126 76.2
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 2.5e-48 195.7 119 77.3
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 4.2e-48 194.9 140 70.7
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 7.2e-48 194.1 123 75.6
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-47 193.4 114 86.0
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 8.0e-47 190.7 126 72.2
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 1.8e-46 189.5 123 73.2
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 3.0e-46 188.7 126 73.0
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 6.8e-46 187.6 142 66.9
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 5.7e-45 184.5 141 67.4
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 7.5e-45 184.1 137 67.9
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 9.8e-45 183.7 128 71.1
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.2e-44 182.6 132 68.2
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 2.8e-44 182.2 120 71.7
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 1.4e-43 179.9 123 70.7
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.4e-43 179.9 124 73.4
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.8e-43 179.5 109 78.0
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 3.1e-43 178.7 132 65.9
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 7.0e-43 177.6 126 69.0
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 9.1e-43 177.2 129 66.7
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 5.9e-42 174.5 120 68.3
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.0e-41 173.7 124 70.2
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 1.7e-41 172.9 114 75.4
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 1.7e-41 172.9 123 67.5
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 2.3e-41 172.6 134 64.2
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 2.9e-41 172.2 134 65.7
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 3.8e-41 171.8 128 64.8
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 5.0e-41 171.4 117 70.1
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 5.0e-41 171.4 139 64.0
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 6.5e-41 171.0 121 71.1
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 8.6e-41 170.6 124 65.3
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 2.5e-40 169.1 121 66.1
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 3.3e-40 168.7 113 70.8
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 7.2e-40 167.5 163 58.9
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-39 166.8 96 85.4
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.2e-39 166.8 122 65.6
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 4.7e-39 164.9 126 61.9
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 6.1e-39 164.5 120 69.2
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 8.0e-39 164.1 134 62.7
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 8.0e-39 164.1 122 64.8
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 1.0e-38 163.7 124 62.1
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.0e-38 163.7 122 65.6
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 1.0e-38 163.7 139 60.4
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.4e-38 163.3 131 63.4
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.8e-38 162.9 134 62.7
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 5.2e-38 161.4 122 63.9
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 2.0e-37 159.5 127 62.2
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.4e-37 158.7 96 84.4
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 8.3e-36 154.1 96 75.0
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 8.3e-36 154.1 128 59.4
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.4e-35 153.3 136 56.6
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 3.1e-35 152.1 150 52.7
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 9.2e-35 150.6 122 61.5
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.2e-34 150.2 147 57.1
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.2e-34 150.2 147 57.1
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.6e-34 149.8 114 65.8
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 7.8e-34 147.5 122 59.8
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.7e-33 146.4 115 62.6
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 6.6e-33 144.4 119 59.7
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.1e-32 143.7 111 66.7
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 9.5e-32 140.6 145 54.5
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 2.1e-31 139.4 126 58.7
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 8.9e-30 134.0 124 58.1
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.4e-29 132.1 130 53.8
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 5.8e-29 131.3 122 55.7
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 2.2e-28 129.4 213 38.0
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 2.2e-28 129.4 121 56.2
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 2.9e-28 129.0 135 54.8
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 3.7e-28 128.6 113 62.8
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.1e-27 127.1 123 56.1
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.1e-27 127.1 131 55.0
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 3.2e-27 125.6 129 54.3
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 4.1e-27 125.2 137 53.3
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 5.4e-27 124.8 132 49.2
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 2.7e-26 122.5 129 53.5
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 2.7e-26 122.5 95 62.1
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 3.5e-26 122.1 90 62.2
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 6.0e-26 121.3 128 54.7
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 7.8e-26 120.9 79 74.7
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 7.8e-26 120.9 117 53.0
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 1.0e-25 120.6 123 56.1
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.0e-25 119.0 91 64.8
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 6.6e-25 117.9 124 50.8
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 8.6e-25 117.5 128 51.6
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 8.6e-25 117.5 128 49.2
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.1e-24 117.1 121 50.4
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.5e-24 116.7 124 54.0
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.5e-24 116.7 134 50.7
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.9e-24 116.3 131 48.9
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 4.3e-24 115.2 136 49.3
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 7.3e-24 114.4 123 51.2
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 2.8e-23 112.5 108 51.9
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.4e-22 110.2 125 50.4
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.8e-22 109.8 76 77.6
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 5.8e-21 104.8 125 49.6
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 7.5e-21 104.4 123 49.6
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 1.7e-20 103.2 131 46.6
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 8.3e-20 100.9 132 46.2
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 3.2e-19 99.0 74 64.9
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 5.4e-19 98.2 94 53.2
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 7.0e-19 97.8 77 61.0
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 9.2e-19 97.4 70 67.1
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 4.6e-18 95.1 65 66.2
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 2.5e-16 89.4 123 43.1
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 9.5e-16 87.4 124 44.4
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 2.1e-15 86.3 95 50.5
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 8.1e-15 84.3 87 52.9
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 2.0e-13 79.7 136 38.2
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 7.5e-13 77.8 112 39.3
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 4.9e-12 75.1 64 56.2
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 9.2e-11 70.9 87 44.8
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 1.6e-10 70.1 87 44.8
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.1e-10 69.7 45 71.1
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.5e-10 68.9 48 64.6
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 3.5e-10 68.9 44 70.5
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 7.8e-10 67.8 45 68.9
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 7.8e-10 67.8 58 58.6
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.1e-07 59.7 50 56.0
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 6.2e-07 58.2 44 68.2
Gohir.D10G195250 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-06 56.2 58 63.8


User provided reference genes

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