Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 5.1e-52 207.6 116 100.0
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 1.2e-37 159.8 118 70.3
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 4.4e-35 151.4 117 70.1
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 4.4e-35 151.4 117 70.1
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 5.7e-35 151.0 117 70.1
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 9.1e-33 143.7 119 64.7
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.7e-31 139.4 119 63.0
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.7e-31 139.4 119 63.0
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 2.2e-23 112.5 64 79.7
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 1.5e-22 109.8 123 49.6
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.9e-22 109.4 113 54.0
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 2.1e-21 105.9 117 47.9
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 3.6e-21 105.1 65 76.9
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 6.1e-21 104.4 113 49.6
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 3.0e-20 102.1 108 50.9
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 6.8e-20 100.9 115 49.6
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 5.7e-19 97.8 64 71.9
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 9.7e-19 97.1 96 63.5
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 9.7e-19 97.1 115 46.1
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 1.7e-18 96.3 116 56.9
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 2.2e-18 95.9 89 57.3
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 3.7e-18 95.1 111 47.7
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 6.3e-18 94.4 112 50.0
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 8.3e-18 94.0 64 68.8
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 8.3e-18 94.0 114 50.9
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 1.8e-17 92.8 68 69.1
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 3.1e-17 92.0 110 47.3
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 7.0e-17 90.9 114 50.0
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.2e-16 90.1 94 47.9
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 1.6e-16 89.7 93 53.8
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 2.7e-16 89.0 114 49.1
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 2.7e-16 89.0 110 47.3
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 7.7e-16 87.4 67 65.7
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 7.7e-16 87.4 112 45.5
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 1.0e-15 87.0 65 66.2
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 1.7e-15 86.3 69 62.3
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 3.8e-15 85.1 101 48.5
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.8e-15 85.1 101 48.5
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 5.0e-15 84.7 101 48.5
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 6.5e-15 84.3 116 44.0
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 6.5e-15 84.3 105 47.6
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 6.5e-15 84.3 101 47.5
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 8.5e-15 84.0 101 47.5
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 8.5e-15 84.0 101 47.5
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 1.1e-14 83.6 67 65.7
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.5e-14 83.2 120 45.8
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 2.5e-14 82.4 105 43.8
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 5.5e-14 81.3 92 50.0
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 7.2e-14 80.9 90 52.2
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 7.2e-14 80.9 90 52.2
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 7.2e-14 80.9 90 52.2
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 9.4e-14 80.5 116 41.4
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 1.2e-13 80.1 105 42.9
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 1.6e-13 79.7 64 60.9
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 1.6e-13 79.7 90 51.1
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 1.6e-13 79.7 90 51.1
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 1.6e-13 79.7 60 61.7
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 3.6e-13 78.6 64 62.5
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 4.7e-13 78.2 92 45.7
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 8.0e-13 77.4 61 60.7
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 8.0e-13 77.4 61 60.7
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 8.0e-13 77.4 61 60.7
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 5.2e-12 74.7 59 61.0
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 1.2e-11 73.6 107 44.9
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 1.5e-11 73.2 104 43.3
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 1.5e-11 73.2 58 62.1
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 5.7e-11 71.2 68 55.9
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 5.7e-11 71.2 68 55.9
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 5.7e-11 71.2 68 55.9
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 3.7e-10 68.6 117 40.2
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 3.7e-10 68.6 117 40.2
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 3.7e-10 68.6 58 58.6
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 4.8e-10 68.2 58 58.6
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 6.3e-10 67.8 65 56.9
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 1.1e-09 67.0 49 63.3
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 2.4e-09 65.9 44 75.0
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 3.1e-09 65.5 58 55.2
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 9.1e-09 63.9 49 67.3
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 9.1e-09 63.9 111 38.7
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 2.7e-08 62.4 61 52.5
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 2.7e-08 62.4 43 67.4
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 2.7e-08 62.4 54 59.3
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 4.5e-08 61.6 39 74.4
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 5.9e-08 61.2 42 69.0
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 7.7e-08 60.8 52 51.9
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.7e-07 59.7 35 74.3
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 3.8e-07 58.5 37 67.6
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 6.6e-07 57.8 108 37.0
Oeu052012.1 Olea europaea HOM05D037150 ORTHO05D009506 8.6e-07 57.4 44 54.5
Lsat_1_v5_gn_7_105741 Lactuca sativa HOM05D007708 ORTHO05D009506 1.9e-06 56.2 41 65.9
Lalb_Chr19g0134351 Lupinus albus HOM05D007708 ORTHO05D009506 1.9e-06 56.2 54 59.3
AUR62015628 Chenopodium quinoa HOM05D023068 ORTHO05D009506 9.5e-06 53.9 50 56.0


User provided reference genes

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