Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.1e-162 576.6 291 100.0
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 5.2e-154 547.7 291 95.2
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 5.8e-153 544.3 291 94.2
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.6e-153 543.9 291 94.5
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 7.6e-153 543.9 291 94.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.1e-151 537.3 291 93.8
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 4.6e-150 534.6 291 91.4
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.0e-149 531.9 291 91.4
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 4.3e-148 528.1 291 91.1
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.2e-147 526.6 291 90.0
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.1e-140 503.4 292 87.3
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.9e-135 486.1 295 84.1
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.0e-133 478.8 293 84.0
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.9e-132 476.1 288 83.3
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 3.3e-132 475.3 299 81.3
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 8.1e-131 470.7 299 80.3
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 5.3e-130 468.0 296 80.1
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.5e-129 466.5 294 81.6
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.6e-129 465.7 292 81.8
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 5.8e-129 464.5 294 81.6
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 1.7e-128 463.0 296 79.4
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 2.2e-128 462.6 296 80.1
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 7.1e-127 457.6 293 78.8
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 7.1e-127 457.6 296 79.7
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.1e-126 456.1 291 79.0
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.1e-126 456.1 291 79.0
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 6.0e-126 454.5 293 79.9
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.3e-125 453.4 292 79.8
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 5.1e-125 451.4 292 79.1
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 5.1e-125 451.4 293 79.2
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.1e-125 451.4 291 79.4
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 5.1e-125 451.4 292 78.8
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 6.7e-125 451.1 291 79.7
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 6.7e-125 451.1 291 79.4
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 6.7e-125 451.1 291 77.7
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 8.7e-125 450.7 293 79.2
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 8.7e-125 450.7 291 79.4
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-124 450.3 294 78.6
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.5e-124 449.9 293 79.2
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 1.5e-124 449.9 294 78.6
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.5e-124 449.9 294 78.6
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.9e-124 449.5 293 78.5
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.9e-124 449.5 291 79.0
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.9e-124 449.5 293 76.5
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 2.5e-124 449.1 294 78.2
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 3.3e-124 448.7 291 79.4
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 4.3e-124 448.4 291 79.4
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 9.6e-124 447.2 294 78.2
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 9.6e-124 447.2 291 79.4
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 9.6e-124 447.2 291 78.0
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 9.6e-124 447.2 293 77.8
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 9.6e-124 447.2 291 78.0
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 9.6e-124 447.2 291 78.7
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.3e-123 446.8 289 79.2
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 1.6e-123 446.4 292 78.8
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.6e-123 446.4 289 79.6
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.6e-123 446.4 291 78.7
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 2.1e-123 446.0 289 79.2
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 2.8e-123 445.7 297 77.1
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.8e-123 445.7 296 77.7
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.8e-123 445.7 291 78.7
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 3.7e-123 445.3 289 79.2
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 4.8e-123 444.9 291 78.0
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 4.8e-123 444.9 291 78.0
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 4.8e-123 444.9 291 78.0
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 6.2e-123 444.5 293 77.8
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 8.2e-123 444.1 291 79.0
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 8.2e-123 444.1 289 78.5
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 8.2e-123 444.1 291 77.7
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.1e-122 443.7 292 77.7
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.4e-122 443.4 297 76.8
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.8e-122 443.0 292 77.7
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 3.1e-122 442.2 296 75.7
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 4.0e-122 441.8 291 77.3
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 5.3e-122 441.4 290 77.2
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 6.9e-122 441.0 289 78.2
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 3.4e-121 438.7 294 78.6
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.3e-120 436.8 294 76.2
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 1.1e-119 433.7 291 77.0
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.6e-118 429.9 283 78.8
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 2.1e-118 429.5 291 76.6
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.1e-118 429.5 293 76.5
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 3.5e-118 428.7 283 78.8
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 3.5e-118 428.7 292 75.7
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 6.0e-118 427.9 283 78.4
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 6.0e-118 427.9 287 76.0
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 3.9e-117 425.2 282 78.0
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 5.1e-117 424.9 293 76.8
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 3.3e-116 422.2 292 75.7
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 7.4e-116 421.0 294 75.9
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 1.6e-115 419.9 293 73.7
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.6e-115 419.9 291 75.3
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 3.7e-115 418.7 293 72.0
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 4.8e-115 418.3 292 74.7
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 6.3e-115 417.9 289 72.3
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 6.3e-115 417.9 289 72.3
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.8e-114 416.4 289 74.4
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 2.4e-114 416.0 289 72.0
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 5.3e-114 414.8 294 73.1
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 6.9e-114 414.5 289 72.7
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.5e-113 413.3 289 73.0
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.6e-113 412.5 285 74.7
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 3.4e-113 412.1 289 72.7
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.4e-113 412.1 291 72.9
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 4.5e-113 411.8 294 72.4
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 7.7e-113 411.0 292 72.3
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 2.2e-112 409.5 295 72.9
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 1.1e-111 407.1 280 76.4
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 2.5e-111 406.0 296 73.0
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 2.5e-111 406.0 289 72.3
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 7.2e-111 404.4 292 71.6
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 6.1e-110 401.4 290 70.7
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.0e-109 400.6 292 71.9
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.0e-109 400.6 295 70.8
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.8e-109 399.8 292 71.6
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.8e-109 399.8 295 72.9
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 2.3e-109 399.4 295 70.2
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 5.1e-109 398.3 296 70.3
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.0e-108 396.4 296 70.6
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 4.3e-108 395.2 282 70.9
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 4.1e-106 388.7 295 67.5
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 4.1e-106 388.7 273 72.9
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.2e-105 387.1 289 68.2
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.2e-105 387.1 295 69.8
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 7.7e-105 384.4 291 69.8
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 6.5e-104 381.3 286 71.0
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.9e-103 379.8 295 69.2
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.6e-102 376.7 295 67.5
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 6.1e-102 374.8 295 67.8
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.1e-101 371.7 292 68.8
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 1.1e-100 370.5 291 66.0
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 5.7e-100 368.2 308 64.6
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 7.4e-100 367.9 294 64.6
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.3e-99 367.1 295 66.8
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 9.1e-98 360.9 291 68.0
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 9.1e-98 360.9 293 66.9
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 1.2e-97 360.5 290 63.8
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.5e-97 360.1 303 65.0
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 7.7e-97 357.8 303 64.4
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.2e-94 350.5 301 62.5
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 3.6e-94 349.0 293 64.2
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 2.2e-88 329.7 261 66.3
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.3e-85 319.7 247 68.8
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 2.2e-83 313.2 291 58.8
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 4.5e-81 305.4 279 59.1
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.3e-80 303.9 214 75.2
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-74 284.3 279 55.9
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 7.0e-74 281.6 280 55.7
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 2.9e-72 276.2 193 75.6
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 4.3e-63 245.7 143 84.6
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.5e-60 237.3 267 53.2
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 6.0e-57 225.3 282 44.7
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 2.1e-54 216.9 278 48.2
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.5e-52 210.7 165 69.1
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 2.2e-51 206.8 152 69.1
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.3e-48 197.6 126 73.8
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 3.7e-43 179.5 144 66.7
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 2.9e-35 153.3 101 77.2
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 2.4e-29 133.7 114 63.2
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 2.9e-27 126.7 109 63.3
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.0e-24 118.2 332 30.4
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 3.0e-24 116.7 88 72.7
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.5e-23 114.4 99 63.6
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 3.5e-17 93.2 73 61.6
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 1.5e-12 77.8 72 59.7
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 2.0e-12 77.4 86 55.8
Manes.13G027200 Manihot esculenta HOM05D005748 ORTHO05D007123 2.8e-06 57.0 130 31.5
PGR119G1070 Punica granatum HOM05D005748 ORTHO05D007123 3.7e-06 56.6 123 35.0
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 4.8e-06 56.2 143 32.9
MD16G1097300 Malus domestica HOM05D005748 ORTHO05D007123 6.2e-06 55.8 152 30.3
PGSC0003DMG400020380 Solanum tuberosum HOM05D005748 ORTHO05D007123 6.2e-06 55.8 152 35.5
Sp1g20810 Schrenkiella parvula HOM05D005748 ORTHO05D007123 8.2e-06 55.5 123 35.8
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 8.2e-06 55.5 145 28.3


User provided reference genes

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