Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G072500 Theobroma cacao HOM05D019219 ORTHO05D010142 1.3e-152 543.1 292 100.0
Thecc.07G072100 Theobroma cacao HOM05D000101 ORTHO05D000089 9.9e-44 181.4 167 64.7
Duzib268G1845 Durio zibethinus HOM05D019219 ORTHO05D010142 2.4e-34 150.2 143 65.0
COL.COLO4_09473 Corchorus olitorius HOM05D019219 ORTHO05D010142 3.7e-22 109.8 142 52.1
QL08p018693 Quercus lobata HOM05D008538 ORTHO05D010142 9.0e-21 105.1 149 46.3
Haze_09520 Corylus avellana HOM05D008538 ORTHO05D010142 2.0e-20 104.0 149 47.7
Gohir.A11G283900 Gossypium hirsutum HOM05D019219 ORTHO05D010142 3.4e-20 103.2 132 51.5
Cfa020514 Carpinus fangiana HOM05D008538 ORTHO05D010142 2.9e-19 100.1 151 47.0
Gohir.D11G294900 Gossypium hirsutum HOM05D019219 ORTHO05D010142 4.9e-19 99.4 132 51.5
Gorai.007G318300 Gossypium raimondii HOM05D019219 ORTHO05D010142 4.9e-19 99.4 132 51.5
Duzib182G0003 Durio zibethinus HOM05D000101 ORTHO05D000089 2.1e-17 94.0 138 39.1
QL93p2023_0080 Quercus lobata HOM05D008538 ORTHO05D010142 6.0e-17 92.4 148 43.2
Gohir.A01G045750 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.3e-16 91.3 167 34.1
Manes.03G116200 Manihot esculenta HOM05D008538 ORTHO05D010142 2.3e-16 90.5 145 43.4
Atru.chr2.2829 Acer truncatum HOM05D008538 ORTHO05D010142 3.0e-16 90.1 147 43.5
Ciclev10010245m.g Citrus clementina HOM05D008538 ORTHO05D010142 6.7e-16 89.0 148 45.3
CSS0013852 Camellia sinensis var. sinensis HOM05D008538 ORTHO05D010142 3.3e-15 86.7 134 44.0
CSS0046110 Camellia sinensis var. sinensis HOM05D008538 ORTHO05D010142 3.3e-15 86.7 134 44.0
Manes.15G083500 Manihot esculenta HOM05D008538 ORTHO05D010142 7.4e-15 85.5 144 41.0
Cpa.g.sc80.108 Carica papaya HOM05D008538 ORTHO05D010142 3.7e-14 83.2 117 47.0
QL08p018385 Quercus lobata HOM05D000101 ORTHO05D000089 6.3e-14 82.4 297 32.7
Actinidia18751 Actinidia chinensis HOM05D008538 ORTHO05D010142 1.4e-13 81.3 128 44.5
Dinv08337 Davidia involucrata HOM05D008538 ORTHO05D010142 1.8e-13 80.9 154 37.7
Gohir.D01G036700 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.1e-13 80.1 127 36.2
Gorai.002G044900 Gossypium raimondii HOM05D000101 ORTHO05D000089 3.1e-13 80.1 127 36.2
Hma1.2p1_1003F.1_g246760 Hydrangea macrophylla HOM05D008538 ORTHO05D010142 1.2e-12 78.2 151 37.1
Thecc.07G137200 Theobroma cacao HOM05D000101 ORTHO05D000089 1.5e-12 77.8 154 37.7
Prupe.4G189200 Prunus persica HOM05D008538 ORTHO05D010142 7.6e-12 75.5 130 40.8
Gohir.D01G036950 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.0e-11 75.1 138 37.0
FAN21G1320 Fragaria x ananassa HOM05D008538 ORTHO05D010142 1.3e-11 74.7 134 43.3
Thecc.07G137400 Theobroma cacao HOM05D000101 ORTHO05D000089 1.7e-11 74.3 145 37.9
TWI39G0570 Tripterygium wilfordii HOM05D008538 ORTHO05D010142 1.7e-11 74.3 146 39.0
MD03G1219700 Malus domestica HOM05D008538 ORTHO05D010142 2.2e-11 73.9 139 43.2
FvH4_3g20870 Fragaria vesca HOM05D008538 ORTHO05D010142 2.9e-11 73.6 133 41.4
FAN11G3526 Fragaria x ananassa HOM05D008538 ORTHO05D010142 2.9e-11 73.6 133 41.4
Cc05_g12630 Coffea canephora HOM05D008538 ORTHO05D010142 5.0e-11 72.8 159 36.5
Gohir.D05G350600 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.1e-10 71.6 146 34.2
Gorai.002G079000 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.1e-10 71.6 144 38.9
Gorai.002G044700 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.4e-10 71.2 145 33.8
FAN25G2351 Fragaria x ananassa HOM05D001272 ORTHO05D001843 1.9e-10 70.9 133 42.1
Gohir.A01G071300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.9e-10 70.9 144 37.5
Thecc.07G061400 Theobroma cacao HOM05D000101 ORTHO05D000089 1.9e-10 70.9 147 40.8
Thecc.07G137600 Theobroma cacao HOM05D000101 ORTHO05D000089 2.5e-10 70.5 139 41.0
COL.COLO4_16254 Corchorus olitorius HOM05D000101 ORTHO05D000089 5.5e-10 69.3 145 40.7
Thecc.07G061800 Theobroma cacao HOM05D000101 ORTHO05D000089 7.2e-10 68.9 146 38.4
Gohir.A04G033550 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.2e-09 68.2 184 33.7
Gorai.009G381800 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.6e-09 67.8 146 35.6
Duzib213G1018 Durio zibethinus HOM05D000101 ORTHO05D000089 2.1e-09 67.4 138 43.5
Thecc.07G060300 Theobroma cacao HOM05D000101 ORTHO05D000089 2.1e-09 67.4 146 37.0
Gohir.D01G036800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.7e-09 67.0 111 37.8
Gorai.002G044500 Gossypium raimondii HOM05D000101 ORTHO05D000089 3.6e-09 66.6 139 33.1
Ciclev10010289m.g Citrus clementina HOM05D019219 ORTHO05D010142 6.1e-09 65.9 85 44.7
Gohir.D01G058200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 6.1e-09 65.9 138 36.2
Thecc.07G058100 Theobroma cacao HOM05D000101 ORTHO05D000089 6.1e-09 65.9 146 36.3
Duzib213G0220 Durio zibethinus HOM05D000101 ORTHO05D000089 7.9e-09 65.5 151 37.7
Gohir.D05G347200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.0e-08 65.1 207 31.9
Gohir.D05G353750 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.0e-08 65.1 169 32.0
Thecc.07G060900 Theobroma cacao HOM05D000101 ORTHO05D000089 1.3e-08 64.7 146 38.4
ClCG10G006550 Citrullus lanatus HOM05D008538 ORTHO05D010142 2.3e-08 63.9 127 41.7
Gohir.D01G036500 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.3e-08 63.9 145 30.3
Gorai.009G382700 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.3e-08 63.9 146 34.9
Thecc.07G057600 Theobroma cacao HOM05D000101 ORTHO05D000089 3.0e-08 63.5 148 37.2
Thecc.07G060200 Theobroma cacao HOM05D000101 ORTHO05D000089 3.0e-08 63.5 150 36.0
Duzib114G0705 Durio zibethinus HOM05D000101 ORTHO05D000089 3.9e-08 63.2 148 35.8
Gohir.D05G353400 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.9e-08 63.2 146 34.2
Thecc.07G057800 Theobroma cacao HOM05D000101 ORTHO05D000089 3.9e-08 63.2 148 37.8
Gohir.A01G046050 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.1e-08 62.8 168 31.5
Gohir.D05G360300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.1e-08 62.8 192 32.3
Gorai.009G432400 Gossypium raimondii HOM05D000101 ORTHO05D000089 5.1e-08 62.8 182 31.3
Sed0026392 Sechium edule HOM05D008538 ORTHO05D010142 5.1e-08 62.8 126 40.5
Thecc.07G062000 Theobroma cacao HOM05D000101 ORTHO05D000089 5.1e-08 62.8 146 36.3
Gohir.A04G033375 Gossypium hirsutum HOM05D000101 ORTHO05D000089 6.7e-08 62.4 173 32.9
Gohir.D05G354900 Gossypium hirsutum HOM05D000101 ORTHO05D000089 6.7e-08 62.4 148 34.5
Gorai.009G380200 Gossypium raimondii HOM05D000101 ORTHO05D000089 6.7e-08 62.4 146 34.9
Gorai.009G430600 Gossypium raimondii HOM05D000101 ORTHO05D000089 6.7e-08 62.4 146 32.9
Potri.011G127200 Populus trichocarpa HOM05D000101 ORTHO05D000089 6.7e-08 62.4 90 40.0
Gohir.A04G033300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.1e-07 61.6 148 35.1
Gohir.D05G352800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.1e-07 61.6 146 32.2
Gorai.009G375100 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.1e-07 61.6 207 31.4
Phvul.011G154700 Phaseolus vulgaris HOM05D011644 ORTHO05D010142 1.1e-07 61.6 133 36.8
Gorai.009G379500 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.5e-07 61.2 181 32.0
Gorai.009G380100 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.5e-07 61.2 196 28.6
Gorai.009G385800 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.5e-07 61.2 148 35.1
Gohir.D05G350400 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.9e-07 60.8 146 34.2
Gorai.009G379700 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.9e-07 60.8 168 31.5
Thecc.07G062100 Theobroma cacao HOM05D000101 ORTHO05D000089 1.9e-07 60.8 146 36.3
Aqoxy4G01205 Aquilegia oxysepala HOM05D000101 ORTHO05D000089 2.5e-07 60.5 83 44.6
Duzib170G0171 Durio zibethinus HOM05D000101 ORTHO05D000089 2.5e-07 60.5 146 33.6
Thecc.07G072400 Theobroma cacao HOM05D000101 ORTHO05D000089 2.5e-07 60.5 145 39.3
Gohir.A04G033651 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.3e-07 60.1 168 30.4
Gohir.D05G349800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.3e-07 60.1 183 30.6
Gorai.003G073100 Gossypium raimondii HOM05D000101 ORTHO05D000089 3.3e-07 60.1 146 32.9
Gorai.009G382200 Gossypium raimondii HOM05D000101 ORTHO05D000089 3.3e-07 60.1 146 32.9
Thecc.07G072300 Theobroma cacao HOM05D000101 ORTHO05D000089 3.3e-07 60.1 169 33.1
Thecc.07G090800 Theobroma cacao HOM05D000101 ORTHO05D000089 3.3e-07 60.1 91 44.0
Gohir.D05G350300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.3e-07 59.7 169 30.2
Gohir.D05G352750 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.3e-07 59.7 146 33.6
Gohir.D05G353550 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.3e-07 59.7 145 31.0
Gorai.009G380300 Gossypium raimondii HOM05D000101 ORTHO05D000089 4.3e-07 59.7 98 37.8
Gorai.009G383200 Gossypium raimondii HOM05D000101 ORTHO05D000089 4.3e-07 59.7 146 31.5
MELO3C016550.2 Cucumis melo HOM05D008538 ORTHO05D010142 5.7e-07 59.3 130 41.5
Gohir.A04G033400 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.7e-07 59.3 153 33.3
Gohir.A04G036100 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.7e-07 59.3 207 31.9
Gorai.009G387500 Gossypium raimondii HOM05D000101 ORTHO05D000089 5.7e-07 59.3 146 32.2
Thecc.03G040300 Theobroma cacao HOM05D000101 ORTHO05D000089 5.7e-07 59.3 148 35.8
Gorai.009G379800 Gossypium raimondii HOM05D000101 ORTHO05D000089 7.4e-07 58.9 146 33.6
Nitab4.5_0000207g0250 Nicotiana tabacum HOM05D008538 ORTHO05D010142 7.4e-07 58.9 135 39.3
Thecc.07G061100 Theobroma cacao HOM05D000101 ORTHO05D000089 7.4e-07 58.9 148 35.1
Haze_09523 Corylus avellana HOM05D000101 ORTHO05D000089 9.7e-07 58.5 112 33.9
Gohir.D05G354940 Gossypium hirsutum HOM05D000101 ORTHO05D000089 9.7e-07 58.5 146 32.2
Gohir.D05G355300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.3e-06 58.2 148 33.8
Gorai.009G379600 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.3e-06 58.2 193 29.5
Gorai.009G381300 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.3e-06 58.2 146 32.9
Gorai.009G387600 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.3e-06 58.2 148 33.8
Thecc.07G060700 Theobroma cacao HOM05D000101 ORTHO05D000089 1.3e-06 58.2 148 34.5
Gohir.D05G349700 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.6e-06 57.8 183 30.1
Gorai.009G385200 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.6e-06 57.8 146 34.2
Gorai.009G386200 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.6e-06 57.8 146 31.5
Gorai.009G386500 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.6e-06 57.8 146 31.5
Gohir.D05G351100 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.2e-06 57.4 146 32.9
Gohir.D05G353600 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.2e-06 57.4 146 32.9
Gohir.D05G355200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.2e-06 57.4 146 32.2
Gorai.009G386400 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.2e-06 57.4 146 32.9
Lsat_1_v5_gn_5_6940 Lactuca sativa HOM05D008538 ORTHO05D010142 2.8e-06 57.0 136 36.0
Gohir.D05G349900 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.7e-06 56.6 146 32.2
Gohir.D05G350200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.7e-06 56.6 146 31.5
Gorai.009G380000 Gossypium raimondii HOM05D000101 ORTHO05D000089 3.7e-06 56.6 146 31.5
Gorai.009G386700 Gossypium raimondii HOM05D000101 ORTHO05D000089 3.7e-06 56.6 148 33.8
EL10Ac4g08077 Beta vulgaris HOM05D024071 ORTHO05D023383 4.8e-06 56.2 147 30.6
Gohir.D05G353800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.8e-06 56.2 169 30.8
Duzib213G0389 Durio zibethinus HOM05D000101 ORTHO05D000089 6.3e-06 55.8 145 36.6
Gohir.D05G351200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 6.3e-06 55.8 206 28.6
QL08p001456 Quercus lobata HOM05D000101 ORTHO05D000089 6.3e-06 55.8 150 34.7
Glyma.06G253800 Glycine max HOM05D011644 ORTHO05D010142 8.2e-06 55.5 132 34.1
Gohir.D05G354800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 8.2e-06 55.5 83 39.8
MBI18_g11118_MAGBIO Magnolia biondii HOM05D008666 ORTHO05D009871 8.2e-06 55.5 107 32.7
PGSC0003DMG400025004 Solanum tuberosum HOM05D008538 ORTHO05D010142 8.2e-06 55.5 139 37.4


User provided reference genes

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