Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G070800 Theobroma cacao HOM05D007962 ORTHO05D009990 5.4e-221 770.8 414 100.0
Duzib213G0567 Durio zibethinus HOM05D007962 ORTHO05D009990 3.6e-156 555.4 486 68.7
COL.COLO4_09484 Corchorus olitorius HOM05D007962 ORTHO05D009990 1.9e-149 533.1 461 69.6
Duzib170G0916 Durio zibethinus HOM05D007962 ORTHO05D009990 1.0e-139 500.7 453 66.9
Gorai.013G165900 Gossypium raimondii HOM05D007962 ORTHO05D009990 2.0e-138 496.5 465 65.6
Gohir.A13G143400 Gossypium hirsutum HOM05D007962 ORTHO05D009990 9.2e-128 461.1 430 66.0
Gohir.D13G148100 Gossypium hirsutum HOM05D007962 ORTHO05D009990 4.3e-101 372.5 352 64.8
QL08p017718 Quercus lobata HOM05D007962 ORTHO05D009990 2.6e-82 310.1 484 46.5
Sabra11G0110900 Salix brachista HOM05D007962 ORTHO05D009990 2.4e-80 303.5 400 50.5
GSVIVG01014440001 Vitis vinifera HOM05D007962 ORTHO05D009990 7.1e-80 302.0 454 46.5
Potri.011G126600 Populus trichocarpa HOM05D007962 ORTHO05D009990 2.1e-79 300.4 426 48.4
Potri.001G407200 Populus trichocarpa HOM05D007962 ORTHO05D009990 1.8e-78 297.4 504 44.2
CiPaw.11G176900 Carya illinoinensis HOM05D007962 ORTHO05D009990 5.6e-77 292.4 426 49.1
MD03G1218200 Malus domestica HOM05D007962 ORTHO05D009990 9.6e-77 291.6 457 45.5
Haze_09532 Corylus avellana HOM05D007962 ORTHO05D009990 7.6e-74 282.0 465 45.2
Cfa020503 Carpinus fangiana HOM05D007962 ORTHO05D009990 2.9e-73 280.0 452 44.7
Atru.chr2.2909 Acer truncatum HOM05D007962 ORTHO05D009990 1.9e-72 277.3 511 42.1
Manes.15G083000 Manihot esculenta HOM05D007962 ORTHO05D009990 7.9e-71 271.9 458 44.8
RcHm_v2.0_Chr5g0036061 Rosa chinensis HOM05D007962 ORTHO05D009990 1.3e-70 271.2 467 43.0
Dinv22362 Davidia involucrata HOM05D007962 ORTHO05D009990 5.3e-67 259.2 450 42.0
TAR627G0526 Trochodendron aralioides HOM05D007962 ORTHO05D009990 6.9e-67 258.8 473 40.8
CANSAT11G1510 Cannabis sativa HOM05D007962 ORTHO05D009990 9.0e-67 258.5 444 43.5
FAN21G0493 Fragaria x ananassa HOM05D007962 ORTHO05D009990 5.0e-65 252.7 460 42.6
FAN25G2958 Fragaria x ananassa HOM05D007962 ORTHO05D009990 6.5e-65 252.3 460 41.7
FAN11G3981 Fragaria x ananassa HOM05D007962 ORTHO05D009990 1.4e-64 251.1 459 42.3
FAN16G1594 Fragaria x ananassa HOM05D007962 ORTHO05D009990 4.2e-64 249.6 433 42.7
Cpa.g.sc80.118 Carica papaya HOM05D007962 ORTHO05D009990 7.2e-64 248.8 435 43.0
TWI39G0726 Tripterygium wilfordii HOM05D007962 ORTHO05D009990 6.1e-63 245.7 482 39.6
PGR031G2376 Punica granatum HOM05D007962 ORTHO05D009990 1.0e-57 228.4 451 40.1
Ciclev10010584m.g Citrus clementina HOM05D007962 ORTHO05D009990 3.2e-56 223.4 422 42.9
Lj1A853T83 Lonicera japonica HOM05D007962 ORTHO05D009990 4.6e-55 219.5 439 39.6
Actinidia35282 Actinidia chinensis HOM05D007962 ORTHO05D009990 4.8e-52 209.5 426 40.6
MD11G1236000 Malus domestica HOM05D007962 ORTHO05D009990 3.1e-51 206.8 386 43.0
Actinidia18741 Actinidia chinensis HOM05D007962 ORTHO05D009990 1.5e-50 204.5 469 38.2
CSS0037131 Camellia sinensis var. sinensis HOM05D007962 ORTHO05D009990 7.7e-50 202.2 444 41.0
Dinv08346 Davidia involucrata HOM05D007962 ORTHO05D009990 5.0e-49 199.5 364 42.0
vmacro09563 Vaccinium macrocarpon HOM05D007962 ORTHO05D009990 4.7e-47 193.0 436 38.8
Sabra16G0268600 Salix brachista HOM05D007962 ORTHO05D009990 8.8e-46 188.7 371 39.6
Eucgr.F03357 Eucalyptus grandis HOM05D007962 ORTHO05D009990 4.8e-44 183.0 437 37.8
RhsimUnG0258400 Rhododendron simsii HOM05D007962 ORTHO05D009990 7.0e-43 179.1 427 40.3
Nitab4.5_0001320g0060 Nicotiana tabacum HOM05D007962 ORTHO05D009990 4.2e-40 169.9 396 36.4
MELO3C016557.2 Cucumis melo HOM05D007962 ORTHO05D009990 5.2e-38 162.9 423 37.1
Lj3g0007855 Lotus japonicus HOM05D007962 ORTHO05D009990 5.7e-37 159.5 565 29.9
arahy.Tifrunner.gnm1.ann1.680K8M Arachis hypogaea HOM05D007962 ORTHO05D009990 1.3e-36 158.3 494 34.0
Oeu006765.1 Olea europaea HOM05D007962 ORTHO05D009990 1.1e-35 155.2 427 37.5
Nn1g06763 Nelumbo nucifera HOM05D007962 ORTHO05D009990 2.7e-34 150.6 476 32.4
Nitab4.5_0000207g0280 Nicotiana tabacum HOM05D007962 ORTHO05D009990 7.7e-34 149.1 382 36.4
AUR62015596 Chenopodium quinoa HOM05D007962 ORTHO05D009990 6.5e-33 146.0 482 33.4
EL10Ac4g08053 Beta vulgaris HOM05D007962 ORTHO05D009990 1.9e-32 144.4 474 33.3
FvH4_3g21030 Fragaria vesca HOM05D007962 ORTHO05D009990 4.2e-32 143.3 336 39.0
ClCG10G006460 Citrullus lanatus HOM05D007962 ORTHO05D009990 5.5e-32 142.9 405 35.6
arahy.Tifrunner.gnm1.ann1.NS3ZH3 Arachis hypogaea HOM05D007962 ORTHO05D009990 4.7e-31 139.8 495 32.3
CsaV3_3G005940 Cucumis sativus L. HOM05D007962 ORTHO05D009990 8.0e-31 139.0 376 36.7
Phvul.011G137100 Phaseolus vulgaris HOM05D007962 ORTHO05D009990 2.3e-30 137.5 485 29.3
Lalb_Chr19g0134511 Lupinus albus HOM05D007962 ORTHO05D009990 1.5e-29 134.8 361 35.7
AUR62029307 Chenopodium quinoa HOM05D007962 ORTHO05D009990 4.4e-29 133.3 334 35.9
Hma1.2p1_1176F.1_g264250 Hydrangea macrophylla HOM05D007962 ORTHO05D009990 6.3e-28 129.4 329 38.6
Hma1.2p1_1176F.1_g264255 Hydrangea macrophylla HOM05D007962 ORTHO05D009990 6.3e-28 129.4 329 38.6
Glyma.06G271400 Glycine max HOM05D007962 ORTHO05D009990 4.1e-27 126.7 582 27.8
VMungo1127G0274 Vigna mungo HOM05D007962 ORTHO05D009990 7.7e-26 122.5 441 31.1
Psat4g163880 Pisum sativum HOM05D007962 ORTHO05D009990 1.7e-25 121.3 477 30.4
MBI02_g06003_MAGBIO Magnolia biondii HOM05D007962 ORTHO05D009990 2.9e-25 120.6 435 31.3
PSO210G4006 Papaver somniferum HOM05D007962 ORTHO05D009990 8.6e-25 119.0 490 29.0
TPR.G34588 Trifolium pratense HOM05D007962 ORTHO05D009990 1.9e-24 117.9 474 30.6
Ah.06g183570 Amaranthus hybridus HOM05D007962 ORTHO05D009990 6.1e-23 112.8 286 33.2
Sopen10g002730 Solanum pennellii HOM05D007962 ORTHO05D009990 1.8e-22 111.3 401 32.9
PSO832G2030 Papaver somniferum HOM05D007962 ORTHO05D009990 3.0e-22 110.5 493 29.0
Sc16g0006740 Simmondsia chinensis HOM05D007962 ORTHO05D009990 1.2e-21 108.6 250 39.2
Aqoxy1G03880 Aquilegia oxysepala HOM05D007962 ORTHO05D009990 2.6e-21 107.5 543 27.4
Sed0012704 Sechium edule HOM05D007962 ORTHO05D009990 3.4e-21 107.1 406 32.5
HanXRQChr03g0077201 Helianthus annuus HOM05D007962 ORTHO05D009990 2.2e-20 104.4 440 28.4
Medtr8g464490 Medicago truncatula HOM05D007962 ORTHO05D009990 3.5e-18 97.1 486 27.4
Migut.M01857 Erythranthe guttata HOM05D007962 ORTHO05D009990 5.9e-18 96.3 422 31.5
Lsat_1_v5_gn_9_95621 Lactuca sativa HOM05D007962 ORTHO05D009990 1.6e-15 88.2 351 32.2
MSTRG.15202 Avicennia marina HOM05D007962 ORTHO05D009990 1.4e-11 75.1 411 28.7
ECA240G4716 Erigeron canadensis HOM05D000200 ORTHO05D001546 4.3e-08 63.5 402 26.4
HanXRQChr13g0393921 Helianthus annuus HOM05D003190 ORTHO05D009990 1.1e-06 58.9 113 36.3


User provided reference genes

Program Settings