Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 6.5e-168 594.0 297 100.0
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 3.6e-142 508.4 278 93.2
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.7e-137 492.3 278 89.9
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 7.8e-137 490.7 278 88.8
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 2.5e-135 485.7 278 90.3
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.3e-133 479.2 278 88.5
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.0e-133 478.4 278 88.5
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.4e-132 475.3 278 88.1
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 6.8e-125 451.1 278 81.7
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 8.9e-125 450.7 278 81.3
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.3e-123 446.8 279 81.4
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 2.2e-115 419.5 278 73.4
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 2.9e-115 419.1 280 73.9
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 6.4e-115 417.9 280 74.6
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.1e-114 417.2 278 73.0
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 4.6e-113 411.8 278 72.7
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 6.0e-113 411.4 275 73.1
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 1.0e-112 410.6 278 73.4
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.7e-112 409.8 280 71.8
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 6.6e-112 407.9 278 71.9
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 8.6e-112 407.5 278 70.5
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.1e-111 407.1 278 70.5
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.1e-111 407.1 278 70.5
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 3.3e-111 405.6 280 72.5
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 9.5e-111 404.1 278 71.9
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 9.5e-111 404.1 279 71.7
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 9.5e-111 404.1 287 69.0
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.2e-110 403.7 280 70.7
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 1.6e-110 403.3 279 73.1
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 3.6e-110 402.1 234 81.2
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 4.7e-110 401.7 280 70.4
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 6.2e-110 401.4 278 70.9
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 8.1e-110 401.0 288 69.4
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 2.4e-109 399.4 278 70.9
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 4.0e-109 398.7 274 71.2
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 6.8e-109 397.9 279 69.9
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 6.8e-109 397.9 285 70.5
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 1.2e-108 397.1 283 70.3
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 2.0e-108 396.4 278 69.4
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 2.6e-108 396.0 278 69.1
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 1.7e-107 393.3 278 69.1
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 2.2e-107 392.9 278 67.6
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 2.2e-107 392.9 278 67.6
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 2.2e-107 392.9 278 66.9
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 3.8e-107 392.1 278 69.4
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 3.8e-107 392.1 278 69.8
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.9e-107 391.7 279 71.0
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 6.4e-107 391.3 284 71.1
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 1.4e-106 390.2 278 68.0
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.4e-106 390.2 276 69.2
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.4e-106 389.4 279 69.9
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 3.2e-106 389.0 287 66.2
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 4.2e-106 388.7 278 70.5
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 4.2e-106 388.7 278 68.3
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 4.2e-106 388.7 278 67.3
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 5.4e-106 388.3 279 68.1
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 9.2e-106 387.5 278 67.6
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 1.2e-105 387.1 278 67.6
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 1.2e-105 387.1 284 71.5
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 1.6e-105 386.7 283 67.1
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.6e-105 386.7 286 66.4
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 2.1e-105 386.3 284 70.1
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 3.5e-105 385.6 280 68.6
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 3.5e-105 385.6 278 69.1
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.3e-104 383.6 279 68.5
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 6.6e-104 381.3 287 65.9
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 8.7e-104 380.9 278 66.5
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 8.7e-104 380.9 289 65.4
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 8.7e-104 380.9 289 65.4
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 8.7e-104 380.9 286 66.1
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 1.5e-103 380.2 286 66.1
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.5e-103 379.4 287 65.2
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 2.5e-103 379.4 251 70.1
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 2.5e-103 379.4 251 70.1
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.5e-103 379.4 278 70.9
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 3.3e-103 379.0 286 65.7
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.6e-103 378.3 288 65.3
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 5.6e-103 378.3 278 67.6
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 5.6e-103 378.3 278 65.5
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 7.3e-103 377.9 286 65.7
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 7.3e-103 377.9 286 65.4
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 7.3e-103 377.9 275 68.0
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 9.6e-103 377.5 287 64.8
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.2e-102 377.1 281 66.2
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 1.2e-102 377.1 286 65.4
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.2e-102 377.1 286 65.4
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.6e-102 376.7 288 65.3
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 1.6e-102 376.7 288 65.3
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 2.1e-102 376.3 287 65.2
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 2.8e-102 375.9 281 67.3
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 3.6e-102 375.6 238 73.1
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 3.6e-102 375.6 286 65.4
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 3.6e-102 375.6 279 67.0
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 3.6e-102 375.6 278 63.7
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 4.7e-102 375.2 287 63.8
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 4.7e-102 375.2 286 65.4
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 8.1e-102 374.4 286 64.7
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 8.1e-102 374.4 286 64.7
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 8.1e-102 374.4 276 64.5
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.1e-101 374.0 278 70.5
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 1.1e-101 374.0 278 65.5
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 1.8e-101 373.2 288 64.6
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 1.8e-101 373.2 288 64.6
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 1.8e-101 373.2 280 66.8
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.8e-101 373.2 279 67.7
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 2.4e-101 372.9 287 64.5
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 3.1e-101 372.5 289 64.0
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 3.1e-101 372.5 289 64.0
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 4.0e-101 372.1 280 65.4
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 5.3e-101 371.7 278 66.5
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 6.9e-101 371.3 278 65.5
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 6.9e-101 371.3 278 65.8
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 1.2e-100 370.5 288 63.9
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.2e-100 370.5 278 65.5
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 1.2e-100 370.5 278 65.1
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.5e-100 370.2 280 64.6
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 1.5e-100 370.2 278 65.1
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 1.5e-100 370.2 230 74.3
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.6e-100 369.4 280 65.7
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 3.4e-100 369.0 235 77.9
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 5.8e-100 368.2 278 66.9
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 6.4e-99 364.8 280 67.1
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.4e-98 363.6 278 65.1
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.4e-98 362.8 281 62.6
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 9.3e-98 360.9 278 62.6
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 1.2e-97 360.5 278 65.5
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.2e-97 360.5 280 63.6
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 6.0e-97 358.2 278 64.7
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 1.3e-96 357.1 276 62.7
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 2.3e-96 356.3 278 61.9
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 5.1e-96 355.1 309 60.2
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 5.1e-96 355.1 297 59.9
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 4.3e-95 352.1 234 71.8
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 4.3e-95 352.1 278 61.5
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.6e-94 350.1 279 62.7
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 6.2e-94 348.2 279 63.1
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 1.8e-93 346.7 279 60.9
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.2e-91 339.7 251 69.3
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.8e-88 330.1 278 59.0
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 5.1e-88 328.6 278 60.4
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 7.4e-87 324.7 279 58.8
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 6.9e-85 318.2 280 56.4
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 2.9e-83 312.8 271 58.3
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 3.5e-81 305.8 181 78.5
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 1.4e-77 293.9 288 51.4
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.4e-77 293.1 254 58.7
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.5e-76 290.4 222 58.6
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 2.6e-76 289.7 198 70.2
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 1.3e-75 287.3 279 53.8
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 7.7e-68 261.5 274 46.7
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 5.5e-66 255.4 245 51.8
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 1.0e-64 251.1 186 65.6
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 2.8e-62 243.0 235 48.1
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 2.5e-58 229.9 187 62.0
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 1.4e-56 224.2 281 40.2
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 8.8e-56 221.5 178 66.3
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 1.3e-54 217.6 160 67.5
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 4.2e-50 202.6 161 60.2
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.2e-49 201.1 162 63.6
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.2e-48 195.7 247 44.5
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 1.3e-43 181.0 235 40.0
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 2.9e-43 179.9 216 43.5
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 4.4e-39 166.0 141 61.7
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.7e-38 164.1 141 61.0
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.7e-38 164.1 141 61.0
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 7.7e-28 128.6 118 57.6
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-23 113.2 117 47.0
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.7e-19 100.9 74 63.5
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.6e-17 93.2 186 34.9
Actinidia37164 Actinidia chinensis HOM05D004171 ORTHO05D057920 4.9e-06 56.2 68 42.6


User provided reference genes

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