Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G059500 Theobroma cacao HOM05D008919 ORTHO05D011156 5.8e-95 350.9 179 100.0
Thecc.07G059400 Theobroma cacao HOM05D008919 ORTHO05D011156 8.7e-75 283.9 174 83.9
COL.COLO4_09537 Corchorus olitorius HOM05D008919 ORTHO05D011156 9.0e-56 220.7 180 63.9
Gorai.007G317100 Gossypium raimondii HOM05D008919 ORTHO05D011156 1.9e-53 213.0 182 64.3
Gohir.D11G294100 Gossypium hirsutum HOM05D008919 ORTHO05D011156 2.5e-53 212.6 182 63.7
Gohir.A11G281500 Gossypium hirsutum HOM05D008919 ORTHO05D011156 7.1e-53 211.1 182 62.6
Gorai.007G317000 Gossypium raimondii HOM05D008919 ORTHO05D011156 8.7e-51 204.1 181 62.4
Gohir.A11G281400 Gossypium hirsutum HOM05D008919 ORTHO05D011156 3.3e-50 202.2 181 62.4
Gohir.D11G294000 Gossypium hirsutum HOM05D008919 ORTHO05D011156 2.8e-49 199.1 181 60.8
COL.COLO4_09538 Corchorus olitorius HOM05D008919 ORTHO05D011156 1.2e-44 183.7 179 54.7
COL.COLO4_24127 Corchorus olitorius HOM05D008919 ORTHO05D011156 1.3e-30 137.1 178 39.3
Haze_05792 Corylus avellana HOM05D008919 ORTHO05D011156 1.5e-26 123.6 166 43.4
Haze_05799 Corylus avellana HOM05D008919 ORTHO05D011156 1.5e-26 123.6 166 43.4
QL05p021854 Quercus lobata HOM05D008919 ORTHO05D011156 4.4e-26 122.1 167 41.3
Haze_05791 Corylus avellana HOM05D008919 ORTHO05D011156 5.7e-26 121.7 151 43.7
Haze_05798 Corylus avellana HOM05D008919 ORTHO05D011156 5.7e-26 121.7 151 43.7
Haze_05790 Corylus avellana HOM05D008919 ORTHO05D011156 7.4e-26 121.3 177 40.7
Haze_05797 Corylus avellana HOM05D008919 ORTHO05D011156 7.4e-26 121.3 177 40.7
COL.COLO4_29350 Corchorus olitorius HOM05D008919 ORTHO05D011156 1.7e-25 120.2 181 38.7
QL05p022002 Quercus lobata HOM05D008919 ORTHO05D011156 2.8e-25 119.4 178 39.3
Dinv04209 Davidia involucrata HOM05D008919 ORTHO05D011156 1.8e-24 116.7 181 40.9
Haze_05789 Corylus avellana HOM05D008919 ORTHO05D011156 2.4e-24 116.3 177 39.0
Haze_05796 Corylus avellana HOM05D008919 ORTHO05D011156 2.4e-24 116.3 177 39.0
Haze_05787 Corylus avellana HOM05D008919 ORTHO05D011156 7.0e-24 114.8 151 42.4
Haze_05794 Corylus avellana HOM05D008919 ORTHO05D011156 7.0e-24 114.8 151 42.4
QL05p021955 Quercus lobata HOM05D008919 ORTHO05D011156 4.5e-23 112.1 178 36.5
QL05p021916 Quercus lobata HOM05D008919 ORTHO05D011156 2.2e-22 109.8 167 38.3
COL.COLO4_33188 Corchorus olitorius HOM05D008919 ORTHO05D011156 1.9e-21 106.7 165 38.2
QL05p021878 Quercus lobata HOM05D008919 ORTHO05D011156 2.7e-20 102.8 167 37.7
Haze_15055 Corylus avellana HOM05D008919 ORTHO05D011156 1.8e-19 100.1 141 39.7
Haze_05784 Corylus avellana HOM05D008919 ORTHO05D011156 2.3e-19 99.8 143 40.6
Haze_05788 Corylus avellana HOM05D008919 ORTHO05D011156 4.0e-19 99.0 149 36.9
Haze_05795 Corylus avellana HOM05D008919 ORTHO05D011156 5.2e-19 98.6 149 36.9
Haze_05781 Corylus avellana HOM05D008919 ORTHO05D011156 2.0e-18 96.7 125 41.6
Haze_05783 Corylus avellana HOM05D008919 ORTHO05D011156 1.3e-17 94.0 127 40.2
TWI74G1670 Tripterygium wilfordii HOM05D008919 ORTHO05D011156 1.1e-16 90.9 167 36.5
CiPaw.01G236600 Carya illinoinensis HOM05D008919 ORTHO05D011156 1.0e-11 74.3 172 31.4
TAR365G0682 Trochodendron aralioides HOM05D001578 ORTHO05D001207 2.0e-10 70.1 125 35.2
TAR633G1609 Trochodendron aralioides HOM05D004113 ORTHO05D005233 3.4e-10 69.3 144 31.2
CANSAT54G1773 Cannabis sativa HOM05D003556 ORTHO05D003404 9.8e-10 67.8 142 30.3
COL.COLO4_29448 Corchorus olitorius HOM05D036180 ORTHO05D023190 9.8e-10 67.8 143 28.7
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 2.2e-09 66.6 170 27.1
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 2.8e-09 66.2 173 30.6
TAR365G1026 Trochodendron aralioides HOM05D001578 ORTHO05D001207 3.7e-09 65.9 135 32.6
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 3.7e-09 65.9 144 29.9
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 6.3e-09 65.1 152 30.3
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 8.3e-09 64.7 173 31.2
vmacro15637 Vaccinium macrocarpon HOM05D000074 ORTHO05D001262 8.3e-09 64.7 139 30.9
COL.COLO4_29449 Corchorus olitorius HOM05D036180 ORTHO05D023190 1.4e-08 63.9 177 27.1
Thecc.01G319900 Theobroma cacao HOM05D008191 ORTHO05D010044 1.4e-08 63.9 174 27.0
CSS0037733 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 2.4e-08 63.2 115 33.0
TAR628G0877 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.4e-08 63.2 166 32.5
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.4e-08 63.2 117 32.5
TAR636G3366 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.4e-08 63.2 144 29.9
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 3.1e-08 62.8 172 32.0
MELO3C022458.2 Cucumis melo HOM05D001445 ORTHO05D001261 5.4e-08 62.0 169 29.6
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 9.1e-08 61.2 146 30.8
TAR627G1097 Trochodendron aralioides HOM05D004113 ORTHO05D005233 9.1e-08 61.2 138 30.4
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 1.2e-07 60.8 148 32.4
DCAR_028534 Daucus carota HOM05D004113 ORTHO05D005233 1.2e-07 60.8 177 28.8
HanXRQChr08g0218241 Helianthus annuus HOM05D004113 ORTHO05D005233 1.2e-07 60.8 145 30.3
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.6e-07 60.5 129 31.8
Eucgr.D01180 Eucalyptus grandis HOM05D001445 ORTHO05D001261 2.0e-07 60.1 157 28.0
TAR365G0500 Trochodendron aralioides HOM05D001578 ORTHO05D001207 2.7e-07 59.7 139 32.4
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 3.5e-07 59.3 139 34.5
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 3.5e-07 59.3 112 29.5
Aqoxy5G02176 Aquilegia oxysepala HOM05D004113 ORTHO05D005233 4.5e-07 58.9 148 28.4
Eucgr.D01179 Eucalyptus grandis HOM05D001445 ORTHO05D001261 4.5e-07 58.9 144 27.8
Potri.006G134900 Populus trichocarpa HOM05D004113 ORTHO05D003404 4.5e-07 58.9 127 32.3
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 4.5e-07 58.9 143 27.3
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 4.5e-07 58.9 152 29.6
COL.COLO4_03485 Corchorus olitorius HOM05D019324 ORTHO05D155400 5.9e-07 58.5 158 25.9
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 5.9e-07 58.5 133 33.1
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 7.7e-07 58.2 178 26.4
CAN.G1163.3 Capsicum annuum HOM05D004113 ORTHO05D005233 7.7e-07 58.2 134 32.1
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 7.7e-07 58.2 180 28.3
Solyc11g005820.1 Solanum lycopersicum HOM05D004113 ORTHO05D005233 7.7e-07 58.2 136 30.9
CANSAT56G1763 Cannabis sativa HOM05D001445 ORTHO05D001261 1.0e-06 57.8 155 28.4
Ciclev10024443m.g Citrus clementina HOM05D008191 ORTHO05D010044 1.0e-06 57.8 138 27.5
Duzib151G0004 Durio zibethinus HOM05D001578 ORTHO05D001207 1.0e-06 57.8 144 31.2
PGSC0003DMG400028678 Solanum tuberosum HOM05D004113 ORTHO05D005233 1.3e-06 57.4 111 36.0
CDE07G1929 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 1.7e-06 57.0 128 29.7
Eucgr.D01181 Eucalyptus grandis HOM05D001445 ORTHO05D001261 1.7e-06 57.0 144 26.4
QL05p022035 Quercus lobata HOM05D008919 ORTHO05D011156 1.7e-06 57.0 65 47.7
Hma1.2p1_0078F.1_g039850 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 2.3e-06 56.6 126 34.1
Hma1.2p1_1400F.1_g280915 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 2.3e-06 56.6 126 34.1
PGR031G1824 Punica granatum HOM05D001578 ORTHO05D001207 2.3e-06 56.6 155 32.9
Rhsim13G0002900 Rhododendron simsii HOM05D001578 ORTHO05D001207 2.3e-06 56.6 99 33.3
Eucgr.L02459 Eucalyptus grandis HOM05D001445 ORTHO05D001261 2.9e-06 56.2 157 26.8
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 2.9e-06 56.2 172 27.9
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 2.9e-06 56.2 172 27.9
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 2.9e-06 56.2 120 32.5
Peaxi162Scf00589g00001 Petunia axillaris HOM05D004113 ORTHO05D005233 2.9e-06 56.2 139 30.2
MBI04_g11519_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D005233 3.8e-06 55.8 146 26.7
MBI13_g01661_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 3.8e-06 55.8 120 29.2
Prupe.3G007900 Prunus persica HOM05D001445 ORTHO05D001207 3.8e-06 55.8 125 28.0
Sopen11g001780 Solanum pennellii HOM05D004113 ORTHO05D005233 3.8e-06 55.8 135 30.4
DCAR_001364 Daucus carota HOM05D004113 ORTHO05D005233 5.0e-06 55.5 123 32.5
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 5.0e-06 55.5 171 26.9
MSTRG.23446 Avicennia marina HOM05D004113 ORTHO05D005233 6.6e-06 55.1 131 29.8
Cfa002816 Carpinus fangiana HOM05D004113 ORTHO05D005233 6.6e-06 55.1 130 30.8
Haze_25111 Corylus avellana HOM05D004113 ORTHO05D005233 6.6e-06 55.1 129 31.8
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 6.6e-06 55.1 161 29.8
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 6.6e-06 55.1 175 29.7
PSO063G6208 Papaver somniferum HOM05D004113 ORTHO05D005233 6.6e-06 55.1 127 28.3
TPR.G25390 Trifolium pratense HOM05D001578 ORTHO05D001207 6.6e-06 55.1 176 29.0
Cc07_g18140 Coffea canephora HOM05D004113 ORTHO05D005233 8.6e-06 54.7 131 34.4
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 8.6e-06 54.7 168 28.6
HanXRQChr07g0188521 Helianthus annuus HOM05D001445 ORTHO05D001261 8.6e-06 54.7 169 24.9
MD03G1249700 Malus domestica HOM05D001578 ORTHO05D001207 8.6e-06 54.7 95 36.8


User provided reference genes

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