Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 5.8e-170 600.9 322 100.0
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 3.2e-120 435.6 323 76.8
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 1.9e-112 409.8 322 72.0
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 4.5e-106 388.7 322 68.3
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.4e-101 372.1 324 66.7
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.0e-99 364.8 324 65.4
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.6e-98 363.6 324 65.4
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 6.5e-97 358.2 324 64.2
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.2e-96 355.9 324 64.5
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.7e-95 352.8 324 63.9
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.7e-60 237.3 345 46.7
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 6.4e-60 235.3 332 47.0
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 6.0e-58 228.8 268 56.3
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 3.0e-57 226.5 375 46.1
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.4e-54 217.6 342 44.7
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 1.8e-54 217.2 343 44.6
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 3.1e-54 216.5 337 44.5
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.9e-54 214.9 265 54.3
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 3.7e-52 209.5 336 46.7
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 4.9e-52 209.1 294 46.9
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 8.3e-52 208.4 355 43.9
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.9e-51 207.2 338 44.1
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 4.1e-51 206.1 348 44.5
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 5.4e-51 205.7 339 45.7
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 7.1e-51 205.3 344 45.1
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 3.5e-50 203.0 337 43.0
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 6.6e-49 198.7 360 41.7
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 6.6e-49 198.7 328 42.1
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.5e-48 196.8 352 41.8
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 9.5e-48 194.9 341 44.0
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.6e-47 194.1 342 41.5
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.8e-46 190.7 327 43.1
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 8.9e-46 188.3 333 42.3
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 8.9e-46 188.3 355 40.6
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 2.0e-45 187.2 333 42.3
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.2e-44 183.7 333 41.1
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 6.4e-44 182.2 328 40.9
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 6.4e-44 182.2 331 39.6
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 8.4e-44 181.8 355 40.0
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.4e-43 181.0 331 42.9
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 1.9e-43 180.6 335 41.2
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 1.9e-43 180.6 340 43.5
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 2.4e-43 180.3 339 41.6
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 9.2e-43 178.3 326 41.7
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 6.0e-42 175.6 323 41.2
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 6.0e-42 175.6 348 40.5
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 7.8e-42 175.3 331 42.3
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.7e-41 174.1 339 39.5
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.7e-41 174.1 332 40.7
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 8.6e-41 171.8 334 42.5
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.1e-40 171.4 341 41.6
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 1.1e-40 171.4 339 41.3
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 3.3e-40 169.9 332 41.3
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 4.3e-40 169.5 320 40.0
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 4.3e-40 169.5 331 39.6
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 5.6e-40 169.1 329 40.1
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 5.6e-40 169.1 325 40.9
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 7.3e-40 168.7 341 40.2
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.6e-39 167.5 341 40.8
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 2.8e-39 166.8 344 39.8
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.8e-39 166.8 481 32.2
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 6.2e-39 165.6 330 37.9
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 1.1e-38 164.9 350 38.3
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.4e-38 164.5 337 39.2
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 2.4e-38 163.7 357 39.2
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.9e-38 161.8 334 39.5
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 8.9e-38 161.8 339 40.1
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.2e-37 161.4 329 37.1
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.2e-37 161.4 329 37.1
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 1.2e-37 161.4 341 40.5
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 2.0e-37 160.6 333 38.7
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 3.4e-37 159.8 328 38.1
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 2.9e-36 156.8 338 37.9
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 4.9e-36 156.0 365 38.6
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 4.9e-36 156.0 327 38.5
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 6.4e-36 155.6 325 40.6
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 6.4e-36 155.6 366 38.8
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 8.4e-36 155.2 340 36.5
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.4e-35 154.5 341 37.8
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.9e-35 154.1 332 38.6
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 1.9e-35 154.1 350 36.9
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 3.2e-35 153.3 343 37.3
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 5.4e-35 152.5 327 36.4
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 5.4e-35 152.5 244 48.4
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 7.1e-35 152.1 353 36.3
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 7.1e-35 152.1 338 37.9
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.6e-34 149.4 312 37.5
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 6.0e-34 149.1 333 36.3
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.0e-33 148.3 333 39.0
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 2.3e-33 147.1 333 37.8
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 3.0e-33 146.7 321 38.0
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 3.0e-33 146.7 294 38.8
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 3.9e-33 146.4 347 35.2
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 6.6e-33 145.6 326 36.8
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 1.1e-32 144.8 340 36.2
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.9e-32 144.1 297 39.1
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 4.3e-32 142.9 278 41.7
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.3e-31 141.4 338 34.9
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 4.8e-31 139.4 350 34.6
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 6.2e-31 139.0 324 35.8
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.1e-30 138.3 332 34.9
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 6.9e-30 135.6 365 34.8
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 4.5e-29 132.9 302 34.4
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 9.9e-29 131.7 231 42.4
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 2.2e-28 130.6 351 31.9
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.4e-27 127.1 325 35.4
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 4.2e-27 126.3 303 34.3
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 2.1e-26 124.0 298 36.9
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 3.5e-26 123.2 339 31.9
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 3.5e-26 123.2 334 33.5
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 1.3e-25 121.3 325 35.4
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 1.3e-25 121.3 227 38.3
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 3.9e-25 119.8 333 33.3
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 3.9e-25 119.8 334 34.4
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.9e-25 119.8 341 33.1
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.1e-24 118.2 197 47.2
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 2.5e-24 117.1 269 33.1
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 4.3e-24 116.3 332 34.0
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 1.6e-23 114.4 326 32.2
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 2.1e-23 114.0 335 32.8
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 2.1e-23 114.0 332 32.2
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 4.8e-23 112.8 333 31.2
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 1.4e-22 111.3 325 35.4
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 2.4e-22 110.5 325 32.9
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 2.4e-22 110.5 322 32.3
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 3.1e-22 110.2 328 33.5
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 5.3e-22 109.4 325 32.0
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 6.9e-22 109.0 332 32.2
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.2e-21 108.2 328 31.4
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 1.2e-21 108.2 336 34.8
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.5e-21 107.8 325 31.4
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 2.0e-21 107.5 325 31.7
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 3.4e-21 106.7 326 32.8
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 3.4e-21 106.7 325 32.0
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 7.6e-21 105.5 351 31.6
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 2.2e-20 104.0 300 29.7
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 3.8e-20 103.2 299 31.1
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 8.4e-20 102.1 346 33.2
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 2.4e-19 100.5 341 31.7
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 4.2e-19 99.8 338 30.8
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.2e-18 98.2 141 44.7
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 2.7e-18 97.1 331 28.7
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 7.9e-18 95.5 251 30.3
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 2.3e-17 94.0 196 37.2
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 3.0e-17 93.6 126 48.4
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 8.7e-17 92.0 345 29.3
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 1.5e-16 91.3 349 28.4
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 1.9e-16 90.9 165 40.6
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 5.6e-16 89.4 130 50.8
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 7.4e-16 89.0 272 32.4
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 9.6e-16 88.6 226 30.5
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 2.1e-15 87.4 244 34.4
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.4e-14 84.7 284 30.6
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 1.8e-14 84.3 223 32.7
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 1.2e-13 81.6 154 35.7
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.5e-13 81.3 129 46.5
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 2.6e-13 80.5 318 29.6
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 1.3e-12 78.2 265 30.2
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 2.2e-12 77.4 192 35.4
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 4.9e-12 76.3 208 33.2
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 6.5e-12 75.9 309 28.2
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 1.9e-11 74.3 135 42.2
Pp3c17_23830 Physcomitrium patens HOM05D039964 ORTHO05D002809 7.9e-10 68.9 313 25.6
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 1.8e-09 67.8 379 25.3
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 3.0e-09 67.0 242 30.2
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 8.7e-09 65.5 219 29.2
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.1e-08 65.1 270 27.0
PSO063G4256 Papaver somniferum HOM05D002766 ORTHO05D002809 1.3e-07 61.6 291 27.8
VMungo1080G1564 Vigna mungo HOM05D003841 ORTHO05D004602 2.8e-07 60.5 176 32.4
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 3.7e-07 60.1 343 26.2
Atru.chr1.819 Acer truncatum HOM05D002766 ORTHO05D002809 6.3e-07 59.3 274 27.0
ECA238G1863 Erigeron canadensis HOM05D002766 ORTHO05D002809 1.4e-06 58.2 218 27.1
Migut.F00490 Erythranthe guttata HOM05D002766 ORTHO05D002809 1.4e-06 58.2 257 26.5
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 4.1e-06 56.6 217 30.4
Prupe.5G070000 Prunus persica HOM05D003841 ORTHO05D004602 5.3e-06 56.2 164 36.6
GSVIVG01014040001 Vitis vinifera HOM05D002766 ORTHO05D002809 5.3e-06 56.2 233 26.6
Ciclev10005283m.g Citrus clementina HOM05D002766 ORTHO05D002809 6.9e-06 55.8 282 27.0
QL02p025713 Quercus lobata HOM05D002766 ORTHO05D002809 9.0e-06 55.5 147 31.3
Rhsim09G0190500 Rhododendron simsii HOM05D002766 ORTHO05D002809 9.0e-06 55.5 242 26.4


User provided reference genes

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