Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G050800 Theobroma cacao HOM05D006334 ORTHO05D008320 6.7e-104 381.3 302 100.0
COL.COLO4_09585 Corchorus olitorius HOM05D006334 ORTHO05D008320 1.7e-94 350.1 302 92.1
Duzib268G1565 Durio zibethinus HOM05D006334 ORTHO05D008320 3.8e-91 339.0 302 89.1
Gorai.002G083500 Gossypium raimondii HOM05D006334 ORTHO05D008320 3.2e-90 335.9 302 91.4
Gohir.D01G062800 Gossypium hirsutum HOM05D006334 ORTHO05D008320 1.4e-88 330.5 302 88.7
Gohir.A01G075500 Gossypium hirsutum HOM05D006334 ORTHO05D008320 4.4e-87 325.5 302 87.7
Prupe.4G205200 Prunus persica HOM05D006334 ORTHO05D008320 5.2e-80 302.0 302 78.8
Manes.03G123900 Manihot esculenta HOM05D006334 ORTHO05D008320 1.2e-79 300.8 302 77.8
Haze_09629 Corylus avellana HOM05D006334 ORTHO05D008320 2.6e-79 299.7 302 72.8
MD11G1224700 Malus domestica HOM05D006334 ORTHO05D008320 3.7e-78 295.8 302 75.5
MD03G1210000 Malus domestica HOM05D006334 ORTHO05D008320 6.4e-78 295.0 302 69.5
CiPaw.12G127100 Carya illinoinensis HOM05D006334 ORTHO05D008320 1.8e-77 293.5 302 74.2
FvH4_3g21950 Fragaria vesca HOM05D006334 ORTHO05D008320 1.8e-77 293.5 298 68.1
FAN11G3716 Fragaria x ananassa HOM05D006334 ORTHO05D008320 1.8e-77 293.5 298 69.5
Potri.001G418900 Populus trichocarpa HOM05D006334 ORTHO05D008320 9.2e-77 291.2 304 60.2
RcHm_v2.0_Chr5g0037801 Rosa chinensis HOM05D006334 ORTHO05D008320 1.2e-76 290.8 298 67.4
Ciclev10009059m.g Citrus clementina HOM05D006334 ORTHO05D008320 1.0e-75 287.7 302 81.5
Dinv22296 Davidia involucrata HOM05D006334 ORTHO05D008320 1.7e-75 287.0 302 66.2
FAN25G1013 Fragaria x ananassa HOM05D006334 ORTHO05D008320 2.3e-75 286.6 302 70.5
vmacro09744 Vaccinium macrocarpon HOM05D006334 ORTHO05D008320 2.9e-75 286.2 303 80.5
Lsat_1_v5_gn_7_109541 Lactuca sativa HOM05D006334 ORTHO05D008320 1.1e-74 284.3 302 72.2
CAN.G1110.6 Capsicum annuum HOM05D006334 ORTHO05D008320 9.5e-74 281.2 301 78.7
ClCG05G014700 Citrullus lanatus HOM05D006334 ORTHO05D008320 9.5e-74 281.2 302 70.9
CSS0039549 Camellia sinensis var. sinensis HOM05D006334 ORTHO05D008320 1.2e-73 280.8 304 67.1
Nn1g07058 Nelumbo nucifera HOM05D006334 ORTHO05D008320 1.2e-73 280.8 302 83.8
Aa31LG5G10300 Aethionema arabicum HOM05D006334 ORTHO05D008320 2.1e-73 280.0 304 79.3
Nitab4.5_0002229g0170 Nicotiana tabacum HOM05D006334 ORTHO05D008320 2.8e-73 279.6 301 78.1
CsaV3_3G023200 Cucumis sativus L. HOM05D006334 ORTHO05D008320 8.0e-73 278.1 302 79.5
CsaV3_UNG104770 Cucumis sativus L. HOM05D006334 ORTHO05D008320 8.0e-73 278.1 302 79.5
THA.LOC104812531 Tarenaya hassleriana HOM05D006334 ORTHO05D008320 8.0e-73 278.1 301 80.4
Lj8A166G85 Lonicera japonica HOM05D006334 ORTHO05D008320 1.8e-72 276.9 313 67.1
Sabra16G0284400 Salix brachista HOM05D006334 ORTHO05D008320 1.8e-72 276.9 303 65.7
Cfa020403 Carpinus fangiana HOM05D001306 ORTHO05D001159 3.1e-72 276.2 300 66.7
MELO3C018091.2 Cucumis melo HOM05D006334 ORTHO05D008320 4.0e-72 275.8 302 79.5
AUR62015668 Chenopodium quinoa HOM05D006334 ORTHO05D008320 6.8e-72 275.0 298 60.7
Nitab4.5_0002342g0070 Nicotiana tabacum HOM05D006334 ORTHO05D008320 1.2e-71 274.2 302 75.5
Atru.chr2.3229 Acer truncatum HOM05D006334 ORTHO05D008320 2.6e-71 273.1 303 67.7
QL08p012752 Quercus lobata HOM05D006334 ORTHO05D008320 3.4e-71 272.7 184 87.0
QL08p012879 Quercus lobata HOM05D006334 ORTHO05D008320 3.4e-71 272.7 184 78.8
Hund23297 Selenicereus undatus HOM05D006334 ORTHO05D008320 5.8e-71 271.9 302 69.9
AL7G25680 Arabidopsis lyrata HOM05D006334 ORTHO05D008320 7.5e-71 271.6 306 75.5
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 7.5e-71 271.6 301 63.8
DCAR_022532 Daucus carota HOM05D006334 ORTHO05D008320 9.8e-71 271.2 305 62.6
HanXRQChr11g0337741 Helianthus annuus HOM05D006334 ORTHO05D008320 9.8e-71 271.2 292 71.6
CARHR234770 Cardamine hirsuta HOM05D006334 ORTHO05D008320 1.3e-70 270.8 304 77.0
TAR629G3436 Trochodendron aralioides HOM05D006334 ORTHO05D008320 3.7e-70 269.2 302 81.8
AT4G27120 Arabidopsis thaliana HOM05D006334 ORTHO05D008320 8.3e-70 268.1 304 78.9
Eucgr.F03434 Eucalyptus grandis HOM05D006334 ORTHO05D008320 8.3e-70 268.1 300 72.3
arahy.Tifrunner.gnm1.ann1.Q0MPW2 Arachis hypogaea HOM05D006334 ORTHO05D008320 1.1e-69 267.7 300 73.0
GSVIVG01001978001 Vitis vinifera HOM05D006334 ORTHO05D008320 1.1e-69 267.7 302 67.2
TWI38G1766 Tripterygium wilfordii HOM05D006334 ORTHO05D008320 1.4e-69 267.3 303 68.6
arahy.Tifrunner.gnm1.ann1.9AY9GA Arachis hypogaea HOM05D006334 ORTHO05D008320 7.0e-69 265.0 300 72.3
AUR62005409 Chenopodium quinoa HOM05D006334 ORTHO05D008320 1.6e-68 263.8 297 69.0
AUR62020535 Chenopodium quinoa HOM05D006334 ORTHO05D008320 1.6e-68 263.8 298 62.4
Sc07g0002760 Simmondsia chinensis HOM05D006334 ORTHO05D008320 2.0e-68 263.5 302 73.2
Thhalv10025846m.g Eutrema salsugineum HOM05D006334 ORTHO05D008320 1.0e-67 261.2 304 80.9
Carub.0007s1372 Capsella rubella HOM05D006334 ORTHO05D008320 1.7e-67 260.4 304 79.9
MBI02_g23962_MAGBIO Magnolia biondii HOM05D006334 ORTHO05D008320 3.0e-67 259.6 302 68.5
Sp7g25090 Schrenkiella parvula HOM05D006334 ORTHO05D008320 3.0e-67 259.6 304 81.6
Ah.04g165560 Amaranthus hybridus HOM05D006334 ORTHO05D008320 3.9e-67 259.2 298 58.4
Aqoxy1G03666 Aquilegia oxysepala HOM05D006334 ORTHO05D008320 8.6e-67 258.1 185 83.2
Peaxi162Scf00450g00858 Petunia axillaris HOM05D006334 ORTHO05D008320 7.3e-66 255.0 316 75.3
PSO210G7302 Papaver somniferum HOM05D006334 ORTHO05D008320 1.6e-65 253.8 304 64.8
Peaxi162Scf00407g00312 Petunia axillaris HOM05D006334 ORTHO05D008320 1.6e-65 253.8 310 71.3
PSO832G3755 Papaver somniferum HOM05D006334 ORTHO05D008320 4.7e-65 252.3 304 63.8
ECA236G0521 Erigeron canadensis HOM05D006334 ORTHO05D008320 6.2e-65 251.9 301 66.4
PGR031G1291 Punica granatum HOM05D006334 ORTHO05D008320 1.1e-64 251.1 307 75.6
PGSC0003DMG400014399 Solanum tuberosum HOM05D006334 ORTHO05D008320 2.3e-64 250.0 303 78.5
Carub.0008s0614 Capsella rubella HOM05D006334 ORTHO05D008320 1.2e-63 247.7 307 78.8
Solyc10g006460.3 Solanum lycopersicum HOM05D006334 ORTHO05D008320 2.6e-63 246.5 185 78.9
Lj3g0002745 Lotus japonicus HOM05D006334 ORTHO05D008320 3.4e-63 246.1 302 70.9
Glyma.13G288200 Glycine max HOM05D006334 ORTHO05D008320 9.8e-63 244.6 300 75.7
Phvul.005G092400 Phaseolus vulgaris HOM05D006334 ORTHO05D008320 1.3e-62 244.2 183 80.3
RhsimUnG0252800 Rhododendron simsii HOM05D006334 ORTHO05D008320 2.2e-62 243.4 411 49.4
VMungo1080G0184 Vigna mungo HOM05D006334 ORTHO05D008320 3.7e-62 242.7 300 73.3
Medtr2g083200 Medicago truncatula HOM05D006334 ORTHO05D008320 2.4e-61 240.0 182 80.2
Cc05_g13330 Coffea canephora HOM05D006334 ORTHO05D008320 4.1e-61 239.2 304 70.7
Sopen10g002410 Solanum pennellii HOM05D006334 ORTHO05D008320 5.4e-61 238.8 141 86.5
Sed0009538 Sechium edule HOM05D006334 ORTHO05D008320 9.2e-61 238.0 295 78.3
BcaNung03057 Brassica carinata HOM05D006334 ORTHO05D008320 1.2e-60 237.7 305 78.4
CDE05G3377 Ceratophyllum demersum HOM05D006334 ORTHO05D008320 1.2e-60 237.7 185 80.0
BolC1t02259H Brassica oleracea HOM05D006334 ORTHO05D008320 2.1e-60 236.9 305 78.0
Migut.M01801 Erythranthe guttata HOM05D006334 ORTHO05D008320 2.7e-60 236.5 140 82.9
SGA_v2.0_scaffold101G29789 Striga asiatica HOM05D006334 ORTHO05D008320 4.6e-60 235.7 142 83.8
Glyma.12G213500 Glycine max HOM05D006334 ORTHO05D008320 1.0e-59 234.6 138 87.0
C01p23260 Brassica napus HOM05D006334 ORTHO05D008320 3.0e-59 233.0 305 77.7
BraA01t01781Z Brassica rapa HOM05D006334 ORTHO05D008320 3.0e-59 233.0 305 77.4
Psat5g251960 Pisum sativum HOM05D006334 ORTHO05D008320 1.1e-58 231.1 176 76.7
Os07g0103200 Oryza sativa ssp. japonica HOM05D006334 ORTHO05D008320 3.3e-58 229.6 289 67.8
Ca_01740_v3 Cicer arietinum L. HOM05D006334 ORTHO05D008320 4.3e-58 229.2 139 84.2
Lalb_Chr24g0400251 Lupinus albus HOM05D006334 ORTHO05D008320 4.7e-57 225.7 300 76.0
TPR.G19971 Trifolium pratense HOM05D006334 ORTHO05D008320 6.2e-57 225.3 138 84.1
BolC7t46013H Brassica oleracea HOM05D006334 ORTHO05D001501 1.8e-56 223.8 296 77.0
A03p57090 Brassica napus HOM05D006334 ORTHO05D008320 2.3e-56 223.4 308 75.3
BraA03t14779Z Brassica rapa HOM05D006334 ORTHO05D008320 2.3e-56 223.4 308 75.3
MSTRG.27096 Avicennia marina HOM05D006334 ORTHO05D008320 5.2e-56 222.2 302 68.9
A01p18260 Brassica napus HOM05D006334 ORTHO05D008320 6.8e-56 221.9 289 77.2
BcaC06g32710 Brassica carinata HOM05D006334 ORTHO05D008320 8.9e-56 221.5 307 74.9
C07p54970 Brassica napus HOM05D006334 ORTHO05D008320 8.9e-56 221.5 307 74.9
Zm00001eb298180 Zea mays HOM05D006334 ORTHO05D008320 3.4e-55 219.5 169 71.6
FAN21G3458 Fragaria x ananassa HOM05D006334 ORTHO05D008320 4.4e-55 219.2 307 59.3
unitig_748.g7233 Utricularia gibba HOM05D006334 ORTHO05D008320 8.4e-54 214.9 139 79.9
EL10Ac4g07940 Beta vulgaris HOM05D006334 ORTHO05D008320 5.4e-53 212.2 309 63.4
HPP92_014117 Vanilla planifolia HOM05D006334 ORTHO05D008320 2.1e-52 210.3 288 69.1
SEGI_34639 Sequoiadendron giganteum HOM05D006334 ORTHO05D008320 7.3e-50 201.8 170 75.9
Actinidia35324 Actinidia chinensis HOM05D006334 ORTHO05D008320 1.1e-48 198.0 106 91.5
Mapoly0114s0022 Marchantia polymorpha HOM05D006334 ORTHO05D008320 7.6e-47 191.8 168 73.8
Pp3c20_19360 Physcomitrium patens HOM05D006334 ORTHO05D008320 2.9e-46 189.9 178 68.0
SMO143G0307 Selaginella moellendorffii HOM05D006334 ORTHO05D008320 2.9e-46 189.9 128 75.0
Actinidia10714 Actinidia chinensis HOM05D006334 ORTHO05D008320 2.7e-44 183.3 104 88.5
AagrBONN_evm.TU.Sc2ySwM_228.581 Anthoceros agrestis HOM05D006334 ORTHO05D008320 3.9e-43 179.5 167 73.7
AagrBONN_evm.TU.Sc2ySwM_368.826 Anthoceros agrestis HOM05D006334 ORTHO05D008320 9.6e-42 174.9 167 71.3
CBR_g8852 Chara braunii HOM05D006334 ORTHO05D008320 4.9e-38 162.5 123 61.8
Cpa.g.sc97.55 Carica papaya HOM05D006334 ORTHO05D008320 1.1e-32 144.8 205 79.5
Cre02.g101100 Chlamydomonas reinhardtii HOM05D006334 ORTHO05D008320 1.2e-28 131.3 117 55.6
Oeu032444.1 Olea europaea HOM05D006334 ORTHO05D008320 1.2e-28 131.3 77 79.2
FAN16G3226 Fragaria x ananassa HOM05D006334 ORTHO05D008320 7.4e-26 122.1 202 63.9
ATR0697G296 Amborella trichopoda HOM05D006334 ORTHO05D008320 1.8e-24 117.5 224 52.7
FAN16G1435 Fragaria x ananassa HOM05D006334 ORTHO05D008320 3.1e-24 116.7 66 87.9
Cpa.g.sc97.53 Carica papaya HOM05D006334 ORTHO05D008320 2.2e-22 110.5 70 82.9
BcaC09g50615 Brassica carinata HOM05D006334 ORTHO05D008320 8.4e-22 108.6 223 73.1
Haze_27349 Corylus avellana HOM05D006334 ORTHO05D008320 4.2e-21 106.3 120 42.5
Actinidia10713 Actinidia chinensis HOM05D006334 ORTHO05D030819 5.9e-07 59.3 57 63.2


User provided reference genes

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