Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 8.0e-214 746.9 396 100.0
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 4.8e-158 561.6 394 78.9
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 2.5e-146 522.7 395 74.2
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 9.7e-143 510.8 395 72.9
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.1e-138 497.3 397 72.0
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 7.2e-114 414.8 388 63.1
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 8.0e-113 411.4 429 59.0
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.0e-104 384.4 412 57.0
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.2e-103 380.9 412 56.3
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 5.7e-103 378.6 280 77.1
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 7.0e-101 371.7 397 56.4
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 5.9e-100 368.6 389 57.8
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.1e-98 364.4 406 55.2
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.5e-98 364.0 398 55.8
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.9e-98 363.6 397 56.2
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.8e-97 359.8 400 55.5
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 4.7e-97 359.0 398 55.8
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.5e-95 354.0 402 54.0
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 1.7e-94 350.5 344 61.3
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 4.9e-94 349.0 403 55.1
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.1e-93 346.3 400 55.2
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.1e-93 346.3 409 54.5
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 3.5e-92 342.8 400 54.8
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 3.5e-92 342.8 400 53.0
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 2.3e-91 340.1 398 54.3
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 5.0e-91 339.0 262 71.8
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 5.6e-90 335.5 403 52.4
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.2e-89 334.3 417 50.8
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.2e-89 334.3 399 50.9
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.6e-89 334.0 413 53.5
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 8.0e-89 331.6 398 52.8
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.0e-88 331.3 418 50.0
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.0e-88 331.3 405 51.1
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.0e-88 331.3 399 51.1
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.4e-88 330.9 421 51.1
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 3.1e-88 329.7 414 51.7
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 8.9e-88 328.2 397 50.9
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 2.6e-87 326.6 365 55.3
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 5.8e-87 325.5 400 50.5
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.3e-86 324.3 343 56.3
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.4e-85 320.9 352 55.4
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 4.1e-85 319.3 396 52.0
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 5.4e-85 318.9 391 50.9
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 9.2e-85 318.2 402 48.8
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 9.2e-85 318.2 441 48.1
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.6e-84 315.8 417 49.9
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.3e-83 314.3 241 72.6
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.0e-83 313.2 391 50.1
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 3.0e-83 313.2 395 48.4
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 3.9e-83 312.8 393 50.4
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 3.9e-83 312.8 409 48.4
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 2.5e-82 310.1 403 50.1
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 3.6e-81 306.2 264 64.0
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 3.6e-81 306.2 403 48.6
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.4e-80 304.3 406 49.0
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 1.4e-80 304.3 412 47.6
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.3e-80 303.5 219 74.9
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 3.1e-80 303.1 349 50.7
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 7.5e-79 298.5 338 55.3
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 2.2e-78 297.0 344 53.5
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 6.4e-78 295.4 433 44.1
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 6.4e-78 295.4 246 65.0
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.4e-77 293.5 346 51.2
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 3.2e-77 293.1 411 47.7
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 9.2e-77 291.6 389 47.8
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.6e-76 290.8 442 44.8
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 7.8e-76 288.5 401 48.9
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 1.0e-75 288.1 407 45.9
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.3e-75 287.7 222 73.4
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.7e-75 287.3 401 48.9
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 1.7e-75 287.3 324 53.4
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 3.0e-75 286.6 400 47.0
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 6.6e-75 285.4 335 54.6
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.1e-74 284.6 417 45.8
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 7.3e-74 282.0 402 46.3
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.2e-73 281.2 399 46.6
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 3.6e-73 279.6 359 49.3
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 8.1e-73 278.5 305 52.5
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 2.0e-71 273.9 434 42.4
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 7.5e-71 271.9 442 42.1
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 9.9e-71 271.6 448 42.9
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.2e-70 270.4 510 40.2
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 2.2e-70 270.4 337 49.9
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.1e-69 268.1 443 42.9
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.2e-69 266.5 441 43.3
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 5.4e-69 265.8 429 42.9
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 2.1e-68 263.8 453 42.2
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 2.8e-65 253.4 387 43.7
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.5e-63 247.7 293 49.8
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.5e-63 247.7 293 49.8
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.5e-63 247.7 293 49.8
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 2.0e-63 247.3 269 53.9
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.3e-62 244.6 398 42.7
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 2.2e-62 243.8 495 38.2
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 4.9e-62 242.7 490 38.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.9e-62 242.7 395 42.8
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 1.2e-60 238.0 397 41.1
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.0e-59 235.0 397 40.6
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 7.3e-58 228.8 388 40.5
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.8e-57 226.9 327 45.0
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 4.8e-57 226.1 185 66.5
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.1e-56 224.9 184 65.8
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.1e-56 224.9 255 53.7
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.0e-56 223.0 428 38.1
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.2e-55 221.5 407 40.8
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 4.4e-55 219.5 212 59.9
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.9e-54 216.9 398 40.7
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.1e-53 214.9 365 41.6
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.4e-53 214.5 176 67.6
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 4.6e-52 209.5 251 47.4
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 4.6e-52 209.5 394 41.1
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 3.9e-51 206.5 358 39.9
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 6.6e-51 205.7 540 33.5
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.9e-50 204.1 413 38.3
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 6.2e-49 199.1 192 59.9
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.2e-47 194.9 285 46.3
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 1.2e-47 194.9 324 43.2
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.2e-46 190.7 184 60.9
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 8.4e-46 188.7 207 49.3
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 1.0e-43 181.8 330 37.6
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 9.6e-42 175.3 241 44.4
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 1.4e-40 171.4 276 42.0
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.7e-38 164.5 198 46.0
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 8.4e-38 162.2 209 48.3
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 1.5e-34 151.4 282 39.7
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 1.5e-34 151.4 171 49.7
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 4.3e-34 149.8 206 47.1
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 7.4e-34 149.1 239 43.1
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 3.8e-30 136.7 123 62.6
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 8.4e-30 135.6 202 44.6
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.6e-25 121.3 103 66.0
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 2.2e-25 120.9 114 62.3
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 2.2e-25 120.9 184 42.9
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 5.9e-23 112.8 122 54.9
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 5.9e-23 112.8 122 54.9
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 5.9e-23 112.8 85 69.4
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 7.7e-23 112.5 86 69.8
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 2.2e-22 110.9 223 36.3
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 2.5e-21 107.5 115 57.4
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 4.2e-21 106.7 86 66.3
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 6.7e-19 99.4 253 31.6
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 8.8e-19 99.0 82 63.4
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 2.4e-16 90.9 203 32.0
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 1.1e-13 82.0 128 39.8
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.9e-13 81.3 55 74.5
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 3.2e-13 80.5 75 53.3
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 3.2e-13 80.5 195 30.3
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 1.6e-12 78.2 81 56.8
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 2.2e-09 67.8 168 33.3
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 7.0e-08 62.8 93 40.9
MCO11G525 Micromonas commoda HOM05D004411 ORTHO05D005569 7.7e-07 59.3 161 29.8
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 5.0e-06 56.6 238 28.2
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 6.5e-06 56.2 50 60.0


User provided reference genes

Program Settings